Wall clock time and date at job start Mon Mar 30 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47116 * 2 1 4 4 C 1.52995 * 109.46872 * 119.99707 * 2 1 3 5 5 C 1.53005 * 109.47448 * 64.99953 * 4 2 1 6 6 N 1.46891 * 109.47419 * 186.11332 * 5 4 2 7 7 C 1.46903 * 111.00052 * 159.41401 * 6 5 4 8 8 C 1.50699 * 109.47069 * 197.61770 * 7 6 5 9 9 H 1.08001 * 120.00364 * 5.04768 * 8 7 6 10 10 C 1.37881 * 119.99705 * 185.05557 * 8 7 6 11 11 N 1.31509 * 120.00355 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99721 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47149 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.46772 * 120.00070 * 12 10 8 15 15 H 1.48498 * 109.46772 * 239.99748 * 12 10 8 16 16 C 1.46901 * 111.00325 * 283.36922 * 6 5 4 17 17 C 1.52993 * 109.47419 * 87.02808 * 16 6 5 18 18 H 1.09000 * 109.46991 * 306.28985 * 17 16 6 19 19 O 1.42901 * 109.47305 * 66.28512 * 17 16 6 20 20 C 1.52994 * 109.47339 * 186.28714 * 17 16 6 21 21 C 1.53011 * 117.49985 * 248.74557 * 20 17 16 22 22 C 1.53003 * 117.50105 * 180.08848 * 20 17 16 23 23 H 1.09001 * 109.47096 * 60.00145 * 1 2 3 24 24 H 1.09002 * 109.47315 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47258 * 300.00467 * 1 2 3 26 26 H 1.09000 * 109.46772 * 239.99496 * 2 1 3 27 27 H 1.08997 * 109.47258 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47019 * 299.99902 * 3 2 1 29 29 H 1.08991 * 109.47704 * 59.99832 * 3 2 1 30 30 H 1.08995 * 109.47433 * 304.99813 * 4 2 1 31 31 H 1.09003 * 109.46804 * 184.99742 * 4 2 1 32 32 H 1.09005 * 109.46838 * 66.11798 * 5 4 2 33 33 H 1.09001 * 109.47170 * 306.11953 * 5 4 2 34 34 H 1.09007 * 109.46589 * 317.60776 * 7 6 5 35 35 H 1.08996 * 109.47451 * 77.61099 * 7 6 5 36 36 H 0.96993 * 120.00623 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.46852 * 327.02381 * 16 6 5 38 38 H 1.09002 * 109.47204 * 207.02765 * 16 6 5 39 39 H 0.96703 * 113.99820 * 294.66732 * 19 17 16 40 40 H 1.08996 * 115.55546 * 34.41566 * 20 17 16 41 41 H 1.09004 * 117.49417 * 0.02562 * 21 20 17 42 42 H 1.08993 * 117.49519 * 145.01652 * 21 20 17 43 43 H 1.09004 * 117.49804 * 214.97633 * 22 20 17 44 44 H 1.08997 * 117.49735 * 359.97241 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 1.9952 -2.8549 2.4503 7 6 1.2201 -4.0883 2.6398 8 6 1.2792 -4.5013 4.0878 9 1 1.7674 -3.8653 4.8114 10 6 0.7101 -5.6914 4.4890 11 7 0.1153 -6.4658 3.6081 12 14 0.7840 -6.2038 6.2839 13 1 1.5033 -5.1662 7.0656 14 1 -0.5955 -6.3551 6.8126 15 1 1.5033 -7.4977 6.4000 16 6 3.4379 -3.1254 2.5103 17 6 4.1632 -1.9019 3.0740 18 1 3.8921 -1.0197 2.4942 19 8 3.7840 -1.7101 4.4384 20 6 5.6749 -2.1221 2.9910 21 6 6.4356 -2.3045 4.3060 22 6 6.5813 -1.0045 3.5111 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6054 -0.2616 2.1369 31 1 3.1263 -0.6443 1.2951 32 1 2.1560 -2.6813 0.3630 33 1 0.5589 -2.2706 1.0330 34 1 0.1828 -3.9129 2.3541 35 1 1.6392 -4.8799 2.0187 36 1 -0.2854 -7.3029 3.8903 37 1 3.8095 -3.3382 1.5079 38 1 3.6199 -3.9849 3.1554 39 1 2.8516 -1.4838 4.5594 40 1 6.0207 -2.6893 2.1269 41 1 5.8589 -2.2680 5.2303 42 1 7.2819 -2.9914 4.3068 43 1 7.5235 -0.8367 2.9892 44 1 6.1005 -0.1122 3.9119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838865981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:53 Heat of formation + Delta-G solvation = -40.571400 kcal Electronic energy + Delta-G solvation = -20115.805444 eV Core-core repulsion = 17261.401691 eV Total energy + Delta-G solvation = -2854.403753 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.66011 -37.04915 -35.42904 -34.44286 -32.51119 -29.19886 -28.93279 -27.06681 -25.98851 -23.24070 -22.40139 -22.11313 -20.11231 -19.99607 -19.52265 -16.81980 -16.28224 -15.55812 -15.15293 -14.74015 -14.48816 -14.38271 -14.07022 -13.56702 -13.19954 -13.14359 -12.36247 -12.25362 -12.09629 -11.75838 -11.62189 -11.54108 -11.24010 -11.15414 -10.99111 -10.91755 -10.77425 -10.62085 -10.43635 -10.31707 -10.25525 -10.10348 -9.81270 -9.52130 -9.20982 -8.92491 -8.40458 -7.30439 -5.99792 -4.00643 3.33764 3.41372 3.48062 4.03055 4.44311 4.69426 4.84587 4.99298 5.01475 5.09289 5.20307 5.28557 5.33084 5.35605 5.59157 5.67806 5.73550 5.76411 5.83817 5.86409 5.91990 5.95681 5.96412 6.05762 6.09526 6.15030 6.28134 6.30245 6.33243 6.39233 6.40568 6.59314 6.61342 6.65303 6.83659 7.26034 7.34883 7.86636 8.10761 8.18007 8.37253 8.56483 9.09596 9.64122 11.10744 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.007310 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.516632 B = 3829.246502 C = 5476.701888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.115 4.115 5 C 0.052 3.948 6 N -0.538 5.538 7 C 0.194 3.806 8 C -0.500 4.500 9 H 0.067 0.933 10 C 0.053 3.947 11 N -0.902 5.902 12 Si 0.896 3.104 13 H -0.270 1.270 14 H -0.286 1.286 15 H -0.286 1.286 16 C 0.034 3.966 17 C 0.135 3.865 18 H 0.063 0.937 19 O -0.563 6.563 20 C -0.153 4.153 21 C -0.163 4.163 22 C -0.180 4.180 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.069 0.931 34 H 0.024 0.976 35 H -0.006 1.006 36 H 0.259 0.741 37 H 0.027 0.973 38 H 0.087 0.913 39 H 0.385 0.615 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.983 12.508 -5.691 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.153 4.153 5 C -0.077 4.077 6 N -0.262 5.262 7 C 0.069 3.931 8 C -0.539 4.539 9 H 0.086 0.914 10 C -0.147 4.147 11 N -0.542 5.542 12 Si 0.724 3.276 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.095 4.095 17 C 0.076 3.924 18 H 0.081 0.919 19 O -0.370 6.370 20 C -0.172 4.172 21 C -0.200 4.200 22 C -0.217 4.217 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.012 0.988 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.106 0.894 39 H 0.234 0.766 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.378 12.502 -5.214 15.425 hybrid contribution -0.445 -0.999 0.016 1.094 sum 6.933 11.503 -5.198 14.402 Atomic orbital electron populations 1.21888 0.95366 1.02113 1.01167 1.21108 0.95945 0.95804 0.98768 1.21822 1.00695 0.96331 1.01363 1.21943 1.00505 0.95592 0.97271 1.22257 1.00527 0.93764 0.91152 1.61957 1.04134 1.28865 1.31232 1.19767 0.92234 0.84001 0.97110 1.21240 1.35237 1.04040 0.93394 0.91438 1.24994 0.95590 0.96486 0.97662 1.69967 1.37919 1.12611 1.33679 0.86468 0.77578 0.78427 0.85147 1.19487 1.21179 1.21246 1.22725 0.88945 0.98824 0.98997 1.21456 0.90331 0.96944 0.83712 0.91948 1.86280 1.32313 1.93184 1.25229 1.22358 0.92792 1.03276 0.98769 1.22807 1.01621 0.98813 0.96765 1.22889 1.00584 0.93445 1.04763 0.93409 0.92183 0.92671 0.91739 0.92972 0.93177 0.92751 0.91355 0.91707 0.96061 0.91272 0.95747 0.98820 0.93091 0.95510 0.89425 0.76582 0.87550 0.87453 0.89744 0.89590 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.96 37.16 0.33 -1.41 16 2 C -0.10 -1.15 2.92 -90.62 -0.26 -1.41 16 3 C -0.14 -1.48 9.19 37.16 0.34 -1.14 16 4 C -0.12 -1.61 3.98 -26.73 -0.11 -1.71 16 5 C 0.05 0.88 4.88 -3.83 -0.02 0.87 16 6 N -0.54 -10.92 4.04 -236.07 -0.95 -11.87 16 7 C 0.19 4.94 4.67 -4.97 -0.02 4.91 16 8 C -0.50 -13.84 8.42 -34.44 -0.29 -14.13 16 9 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 10 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 11 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 12 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 C 0.03 0.65 4.47 -3.83 -0.02 0.63 16 17 C 0.13 2.19 3.31 -26.74 -0.09 2.11 16 18 H 0.06 0.96 4.40 -51.93 -0.23 0.73 16 19 O -0.56 -10.00 11.65 -35.23 -0.41 -10.42 16 20 C -0.15 -2.25 5.70 -90.62 -0.52 -2.76 16 21 C -0.16 -2.35 9.88 -26.69 -0.26 -2.61 16 22 C -0.18 -2.30 10.19 -26.69 -0.27 -2.58 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.89 5.32 -51.93 -0.28 0.61 16 32 H 0.02 0.37 7.61 -51.93 -0.40 -0.03 16 33 H 0.07 1.23 5.76 -51.93 -0.30 0.93 16 34 H 0.02 0.66 7.64 -51.93 -0.40 0.27 16 35 H -0.01 -0.17 8.03 -51.93 -0.42 -0.59 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.03 0.49 7.49 -51.93 -0.39 0.10 16 38 H 0.09 1.96 7.13 -51.93 -0.37 1.59 16 39 H 0.39 6.62 8.86 45.56 0.40 7.02 16 40 H 0.11 1.45 8.11 -51.93 -0.42 1.03 16 41 H 0.11 1.74 7.06 -51.93 -0.37 1.37 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -29.03 343.27 -9.02 -38.05 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.26 Total: 6.12 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.28 Total: -17.82 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.22 Total: -37.97 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.41 Total: -10.42 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.03 -9.02 -38.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838865981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.520 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds