Wall clock time and date at job start Mon Mar 30 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47116 * 2 1 4 4 C 1.52995 * 109.46872 * 119.99707 * 2 1 3 5 5 C 1.53005 * 109.47448 * 64.99953 * 4 2 1 6 6 N 1.46891 * 109.47419 * 186.11332 * 5 4 2 7 7 C 1.46903 * 111.00052 * 159.41401 * 6 5 4 8 8 C 1.50699 * 109.47069 * 197.61770 * 7 6 5 9 9 H 1.08001 * 120.00364 * 5.04768 * 8 7 6 10 10 C 1.37881 * 119.99705 * 185.05557 * 8 7 6 11 11 N 1.31509 * 120.00355 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99721 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47149 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.46772 * 120.00070 * 12 10 8 15 15 H 1.48498 * 109.46772 * 239.99748 * 12 10 8 16 16 C 1.46901 * 111.00325 * 283.36922 * 6 5 4 17 17 C 1.52993 * 109.47419 * 87.02808 * 16 6 5 18 18 H 1.09000 * 109.46991 * 306.28985 * 17 16 6 19 19 O 1.42901 * 109.47305 * 66.28512 * 17 16 6 20 20 C 1.52994 * 109.47339 * 186.28714 * 17 16 6 21 21 C 1.53011 * 117.49985 * 248.74557 * 20 17 16 22 22 C 1.53003 * 117.50105 * 180.08848 * 20 17 16 23 23 H 1.09001 * 109.47096 * 60.00145 * 1 2 3 24 24 H 1.09002 * 109.47315 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47258 * 300.00467 * 1 2 3 26 26 H 1.09000 * 109.46772 * 239.99496 * 2 1 3 27 27 H 1.08997 * 109.47258 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47019 * 299.99902 * 3 2 1 29 29 H 1.08991 * 109.47704 * 59.99832 * 3 2 1 30 30 H 1.08995 * 109.47433 * 304.99813 * 4 2 1 31 31 H 1.09003 * 109.46804 * 184.99742 * 4 2 1 32 32 H 1.09005 * 109.46838 * 66.11798 * 5 4 2 33 33 H 1.09001 * 109.47170 * 306.11953 * 5 4 2 34 34 H 1.09007 * 109.46589 * 317.60776 * 7 6 5 35 35 H 1.08996 * 109.47451 * 77.61099 * 7 6 5 36 36 H 0.96993 * 120.00623 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.46852 * 327.02381 * 16 6 5 38 38 H 1.09002 * 109.47204 * 207.02765 * 16 6 5 39 39 H 0.96703 * 113.99820 * 294.66732 * 19 17 16 40 40 H 1.08996 * 115.55546 * 34.41566 * 20 17 16 41 41 H 1.09004 * 117.49417 * 0.02562 * 21 20 17 42 42 H 1.08993 * 117.49519 * 145.01652 * 21 20 17 43 43 H 1.09004 * 117.49804 * 214.97633 * 22 20 17 44 44 H 1.08997 * 117.49735 * 359.97241 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 1.9952 -2.8549 2.4503 7 6 1.2201 -4.0883 2.6398 8 6 1.2792 -4.5013 4.0878 9 1 1.7674 -3.8653 4.8114 10 6 0.7101 -5.6914 4.4890 11 7 0.1153 -6.4658 3.6081 12 14 0.7840 -6.2038 6.2839 13 1 1.5033 -5.1662 7.0656 14 1 -0.5955 -6.3551 6.8126 15 1 1.5033 -7.4977 6.4000 16 6 3.4379 -3.1254 2.5103 17 6 4.1632 -1.9019 3.0740 18 1 3.8921 -1.0197 2.4942 19 8 3.7840 -1.7101 4.4384 20 6 5.6749 -2.1221 2.9910 21 6 6.4356 -2.3045 4.3060 22 6 6.5813 -1.0045 3.5111 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6054 -0.2616 2.1369 31 1 3.1263 -0.6443 1.2951 32 1 2.1560 -2.6813 0.3630 33 1 0.5589 -2.2706 1.0330 34 1 0.1828 -3.9129 2.3541 35 1 1.6392 -4.8799 2.0187 36 1 -0.2854 -7.3029 3.8903 37 1 3.8095 -3.3382 1.5079 38 1 3.6199 -3.9849 3.1554 39 1 2.8516 -1.4838 4.5594 40 1 6.0207 -2.6893 2.1269 41 1 5.8589 -2.2680 5.2303 42 1 7.2819 -2.9914 4.3068 43 1 7.5235 -0.8367 2.9892 44 1 6.1005 -0.1122 3.9119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838865981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:52 Heat of formation + Delta-G solvation = -58.704079 kcal Electronic energy + Delta-G solvation = -20116.591736 eV Core-core repulsion = 17261.401691 eV Total energy + Delta-G solvation = -2855.190045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05030 -38.28161 -36.71553 -35.84141 -34.58435 -30.65751 -30.49976 -27.96335 -27.79037 -24.74347 -24.07071 -23.17760 -21.63511 -21.25758 -20.64206 -18.44841 -18.18120 -16.96650 -16.61236 -16.36644 -15.87631 -15.56928 -15.41585 -14.87962 -14.55415 -14.44102 -14.20495 -13.73407 -13.22643 -13.15843 -12.98646 -12.84934 -12.77002 -12.69784 -12.39187 -12.25809 -12.19082 -12.11419 -11.88262 -11.61326 -11.46250 -11.42250 -11.26958 -11.10523 -10.85621 -10.60678 -10.27166 -9.04533 -8.19060 -6.27829 1.39373 1.40490 1.54614 2.40480 2.89900 3.13346 3.19837 3.55491 3.88893 3.94777 4.07961 4.09857 4.12998 4.21557 4.34782 4.40586 4.49125 4.64258 4.69368 4.74370 4.83637 4.86032 4.87084 4.90429 5.01855 5.03208 5.09817 5.13106 5.17396 5.22206 5.24137 5.30360 5.33543 5.43488 5.46326 5.54802 5.58577 5.70449 6.09318 6.32163 6.64530 6.88967 7.00170 7.41826 8.91612 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.007310 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.516632 B = 3829.246502 C = 5476.701888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.103 4.103 5 C 0.051 3.949 6 N -0.535 5.535 7 C 0.209 3.791 8 C -0.509 4.509 9 H 0.065 0.935 10 C 0.000 4.000 11 N -0.938 5.938 12 Si 0.964 3.036 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.282 1.282 16 C 0.040 3.960 17 C 0.142 3.858 18 H 0.080 0.920 19 O -0.573 6.573 20 C -0.170 4.170 21 C -0.176 4.176 22 C -0.154 4.154 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.021 0.979 33 H 0.058 0.942 34 H 0.001 0.999 35 H -0.040 1.040 36 H 0.263 0.737 37 H 0.035 0.965 38 H 0.049 0.951 39 H 0.385 0.615 40 H 0.117 0.883 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.320 14.352 -5.689 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.198 4.198 4 C -0.140 4.140 5 C -0.077 4.077 6 N -0.259 5.259 7 C 0.083 3.917 8 C -0.548 4.548 9 H 0.083 0.917 10 C -0.197 4.197 11 N -0.579 5.579 12 Si 0.790 3.210 13 H -0.189 1.189 14 H -0.204 1.204 15 H -0.208 1.208 16 C -0.089 4.089 17 C 0.084 3.916 18 H 0.098 0.902 19 O -0.380 6.380 20 C -0.189 4.189 21 C -0.213 4.213 22 C -0.190 4.190 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.019 0.981 35 H -0.022 1.022 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.234 0.766 40 H 0.135 0.865 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.131 0.869 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.727 14.371 -5.218 17.604 hybrid contribution -0.868 -1.576 -0.044 1.800 sum 7.858 12.795 -5.262 15.911 Atomic orbital electron populations 1.21885 0.95471 1.01208 1.01980 1.21090 0.95851 0.96889 0.97491 1.21781 1.01109 0.94786 1.02116 1.21821 1.00874 0.92899 0.98411 1.22354 1.00032 0.95785 0.89543 1.61939 1.04539 1.26098 1.33336 1.19407 0.91451 0.85211 0.95619 1.21496 1.34832 1.04193 0.94271 0.91704 1.25863 0.95188 0.96564 1.02113 1.70086 1.38850 1.13124 1.35831 0.85400 0.77833 0.78027 0.79769 1.18889 1.20379 1.20788 1.22706 0.88300 0.99109 0.98806 1.21470 0.91325 0.95817 0.83036 0.90242 1.86293 1.32361 1.93116 1.26213 1.22415 0.91685 1.05362 0.99398 1.22816 1.01959 1.00866 0.95693 1.22959 1.00810 0.92327 1.02941 0.91677 0.93941 0.92814 0.91446 0.92299 0.91813 0.92673 0.91846 0.90948 0.96030 0.92314 0.98069 1.02208 0.92865 0.94663 0.93264 0.76590 0.86461 0.89729 0.88300 0.86885 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.96 71.98 0.64 -2.65 16 2 C -0.09 -2.04 2.92 -10.80 -0.03 -2.07 16 3 C -0.14 -2.45 9.19 71.98 0.66 -1.79 16 4 C -0.10 -2.71 3.98 30.59 0.12 -2.59 16 5 C 0.05 1.76 4.88 86.31 0.42 2.18 16 6 N -0.54 -22.28 4.04 -900.80 -3.64 -25.92 16 7 C 0.21 11.16 4.67 85.56 0.40 11.56 16 8 C -0.51 -29.00 8.42 25.60 0.22 -28.79 16 9 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 10 C 0.00 0.00 5.46 84.66 0.46 0.47 16 11 N -0.94 -57.25 13.29 21.45 0.28 -56.96 16 12 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 13 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 C 0.04 1.53 4.47 86.30 0.39 1.91 16 17 C 0.14 4.50 3.31 30.59 0.10 4.60 16 18 H 0.08 2.26 4.40 -2.39 -0.01 2.25 16 19 O -0.57 -20.13 11.65 -148.98 -1.74 -21.86 16 20 C -0.17 -4.67 5.70 -10.79 -0.06 -4.73 16 21 C -0.18 -4.81 9.88 30.62 0.30 -4.51 16 22 C -0.15 -3.47 10.19 30.62 0.31 -3.16 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.04 1.08 6.44 -2.39 -0.02 1.06 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.82 5.32 -2.39 -0.01 1.80 16 32 H 0.02 0.74 7.61 -2.38 -0.02 0.73 16 33 H 0.06 2.15 5.76 -2.39 -0.01 2.14 16 34 H 0.00 0.07 7.64 -2.38 -0.02 0.05 16 35 H -0.04 -2.36 8.03 -2.39 -0.02 -2.38 16 36 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.04 1.29 7.49 -2.39 -0.02 1.27 16 38 H 0.05 2.28 7.13 -2.39 -0.02 2.26 16 39 H 0.39 13.21 8.86 -74.05 -0.66 12.55 16 40 H 0.12 2.95 8.11 -2.39 -0.02 2.94 16 41 H 0.08 2.70 7.06 -2.39 -0.02 2.69 16 42 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -63.68 343.27 1.17 -62.51 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.30 Total: 24.30 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 3.94 Total: -29.56 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -3.35 Total: -82.88 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -1.74 Total: -21.86 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -63.68 1.17 -62.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838865981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.805 kcal (2) G-P(sol) polarization free energy of solvation -63.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds