Wall clock time and date at job start Mon Mar 30 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47392 * 2 1 4 4 C 1.52995 * 109.47194 * 120.00355 * 2 1 3 5 5 C 1.53001 * 109.47343 * 64.99852 * 4 2 1 6 6 N 1.46896 * 109.47251 * 174.25160 * 5 4 2 7 7 C 1.46907 * 111.00092 * 295.64375 * 6 5 4 8 8 C 1.50702 * 109.47124 * 288.26711 * 7 6 5 9 9 H 1.08001 * 119.99745 * 4.42072 * 8 7 6 10 10 C 1.37871 * 119.99846 * 184.42424 * 8 7 6 11 11 N 1.31518 * 119.99821 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 120.00246 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46869 * 90.00059 * 12 10 8 14 14 H 1.48490 * 109.47365 * 210.00210 * 12 10 8 15 15 H 1.48497 * 109.47104 * 330.00265 * 12 10 8 16 16 C 1.46902 * 111.00343 * 59.59800 * 6 5 4 17 17 C 1.52996 * 109.46818 * 76.41310 * 16 6 5 18 18 H 1.08998 * 109.46959 * 53.39473 * 17 16 6 19 19 O 1.42900 * 109.47480 * 293.39110 * 17 16 6 20 20 C 1.52999 * 109.46991 * 173.38844 * 17 16 6 21 21 C 1.53008 * 117.51659 * 116.28654 * 20 17 16 22 22 C 1.53000 * 117.50331 * 184.91482 * 20 17 16 23 23 H 1.09001 * 109.47063 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47125 * 299.99862 * 1 2 3 25 25 H 1.09004 * 109.46949 * 59.99978 * 1 2 3 26 26 H 1.09010 * 109.47109 * 240.00214 * 2 1 3 27 27 H 1.09001 * 109.47232 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46838 * 300.00387 * 3 2 1 29 29 H 1.09005 * 109.46774 * 59.99569 * 3 2 1 30 30 H 1.08996 * 109.47047 * 304.99993 * 4 2 1 31 31 H 1.09002 * 109.47199 * 184.99638 * 4 2 1 32 32 H 1.09001 * 109.47216 * 54.24986 * 5 4 2 33 33 H 1.09002 * 109.46829 * 294.25052 * 5 4 2 34 34 H 1.09000 * 109.46590 * 48.26411 * 7 6 5 35 35 H 1.08994 * 109.46889 * 168.26305 * 7 6 5 36 36 H 0.97003 * 119.99863 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.46654 * 316.41798 * 16 6 5 38 38 H 1.08993 * 109.47192 * 196.41781 * 16 6 5 39 39 H 0.96699 * 114.00014 * 299.99594 * 19 17 16 40 40 H 1.08998 * 115.55129 * 330.58763 * 20 17 16 41 41 H 1.09003 * 117.49912 * 214.97072 * 21 20 17 42 42 H 1.08996 * 117.49781 * 359.97438 * 21 20 17 43 43 H 1.09005 * 117.49481 * 359.97438 * 22 20 17 44 44 H 1.08997 * 117.50459 * 144.99528 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 7 2.2404 -2.9167 2.3155 7 6 3.7060 -2.9164 2.2151 8 6 4.1330 -3.8294 1.0948 9 1 3.3895 -4.3014 0.4697 10 6 5.4729 -4.0623 0.8681 11 7 5.8456 -4.8596 -0.1093 12 14 6.7590 -3.2455 1.9490 13 1 7.0580 -4.1213 3.1104 14 1 7.9992 -3.0255 1.1627 15 1 6.2420 -1.9404 2.4333 16 6 1.8004 -2.3524 3.5984 17 6 0.3723 -2.8139 3.8956 18 1 0.3214 -3.9009 3.8334 19 8 -0.5223 -2.2397 2.9406 20 6 -0.0265 -2.3644 5.3026 21 6 -1.1819 -1.3689 5.4258 22 6 -1.3835 -2.8294 5.8349 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1264 -0.6444 1.2950 32 1 1.9833 -2.6292 0.2504 33 1 0.5498 -2.2769 1.2450 34 1 4.0559 -1.9042 2.0123 35 1 4.1345 -3.2677 3.1537 36 1 6.7883 -5.0231 -0.2690 37 1 1.8268 -1.2640 3.5446 38 1 2.4650 -2.6931 4.3922 39 1 -0.5293 -1.2727 2.9400 40 1 0.7914 -2.2770 6.0178 41 1 -1.1241 -0.6267 6.2220 42 1 -1.6579 -1.0338 4.5043 43 1 -1.9923 -3.4553 5.1824 44 1 -1.4583 -3.0481 6.9001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838865982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:55 Heat of formation + Delta-G solvation = -35.972686 kcal Electronic energy + Delta-G solvation = -20318.339933 eV Core-core repulsion = 17464.135596 eV Total energy + Delta-G solvation = -2854.204337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.18874 -37.38361 -35.24035 -34.64465 -32.40608 -29.66895 -28.66012 -26.94356 -26.23159 -23.57494 -22.56276 -22.29896 -20.45824 -20.03355 -19.09070 -16.81435 -16.54590 -15.79239 -15.39133 -15.24557 -14.46817 -14.18290 -14.05303 -13.70061 -13.34834 -12.83116 -12.69540 -12.47002 -12.41717 -12.06851 -11.67853 -11.54229 -11.37941 -11.25036 -10.96224 -10.84697 -10.65645 -10.60931 -10.54720 -10.34830 -10.29740 -10.21034 -9.95195 -9.74614 -9.32928 -9.08176 -8.52374 -7.19417 -6.01105 -3.96837 3.28843 3.36530 3.37737 3.72397 4.40313 4.44449 4.65817 4.89837 4.95849 5.00805 5.13702 5.22247 5.28462 5.31394 5.45001 5.55322 5.59999 5.64207 5.76698 5.79132 5.83957 5.95439 5.97813 6.04366 6.07173 6.11460 6.12645 6.16365 6.26394 6.35599 6.43574 6.50662 6.58000 6.68733 6.93693 7.01433 7.15962 7.67145 7.81657 7.99463 8.15456 8.72123 9.09503 9.61236 11.12396 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.007065 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.275629 B = 3962.129183 C = 5153.600596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.151 4.151 5 C 0.053 3.947 6 N -0.519 5.519 7 C 0.157 3.843 8 C -0.501 4.501 9 H 0.080 0.920 10 C 0.067 3.933 11 N -0.902 5.902 12 Si 0.873 3.127 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.270 1.270 16 C 0.020 3.980 17 C 0.144 3.856 18 H 0.109 0.891 19 O -0.550 6.550 20 C -0.188 4.188 21 C -0.180 4.180 22 C -0.171 4.171 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.087 0.913 34 H -0.007 1.007 35 H 0.018 0.982 36 H 0.262 0.738 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.364 0.636 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.234 10.647 7.944 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.190 4.190 5 C -0.075 4.075 6 N -0.241 5.241 7 C 0.031 3.969 8 C -0.540 4.540 9 H 0.098 0.902 10 C -0.134 4.134 11 N -0.541 5.541 12 Si 0.700 3.300 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.195 1.195 16 C -0.109 4.109 17 C 0.084 3.916 18 H 0.127 0.873 19 O -0.356 6.356 20 C -0.207 4.207 21 C -0.217 4.217 22 C -0.208 4.208 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.011 0.989 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.212 0.788 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.330 9.429 7.708 17.330 hybrid contribution 1.456 1.830 0.872 2.496 sum -10.873 11.258 8.579 17.849 Atomic orbital electron populations 1.21860 0.95585 1.02069 1.00639 1.21040 0.95475 0.95505 0.99188 1.21842 1.00988 0.96591 1.00836 1.22282 1.01629 0.98528 0.96533 1.22418 1.00160 0.89473 0.95455 1.62124 1.10273 1.51851 0.99808 1.20272 0.83437 0.95819 0.97387 1.21030 0.92631 1.26592 1.13700 0.90212 1.24890 0.98271 0.95011 0.95217 1.69898 1.16292 1.37119 1.30816 0.86903 0.81665 0.80406 0.80989 1.20275 1.21281 1.19460 1.22816 0.96162 0.97402 0.94564 1.21506 0.87775 0.98735 0.83562 0.87323 1.86605 1.64971 1.24277 1.59712 1.23211 0.92579 1.04921 0.99977 1.22920 1.02756 0.92798 1.03241 1.22876 0.99552 0.97369 1.01017 0.91875 0.93383 0.93512 0.91032 0.92904 0.93247 0.93318 0.93226 0.91592 0.90468 0.89458 0.98919 0.96398 0.92780 0.94733 0.91113 0.78845 0.87550 0.89291 0.88259 0.88487 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.95 37.16 0.33 -1.40 16 2 C -0.09 -1.31 2.92 -90.62 -0.26 -1.58 16 3 C -0.15 -1.82 9.19 37.16 0.34 -1.48 16 4 C -0.15 -2.45 4.04 -26.73 -0.11 -2.56 16 5 C 0.05 0.98 4.55 -3.83 -0.02 0.97 16 6 N -0.52 -10.61 4.58 -236.07 -1.08 -11.69 16 7 C 0.16 3.78 3.67 -4.97 -0.02 3.76 16 8 C -0.50 -14.30 9.15 -34.44 -0.32 -14.61 16 9 H 0.08 2.50 7.61 -52.49 -0.40 2.10 16 10 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 11 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 12 Si 0.87 21.67 27.38 -169.99 -4.65 17.02 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.27 -6.45 6.67 56.52 0.38 -6.07 16 16 C 0.02 0.32 4.62 -3.82 -0.02 0.30 16 17 C 0.14 2.01 3.53 -26.73 -0.09 1.91 16 18 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 19 O -0.55 -7.46 9.58 -35.23 -0.34 -7.80 16 20 C -0.19 -2.14 5.73 -90.62 -0.52 -2.66 16 21 C -0.18 -1.77 9.71 -26.73 -0.26 -2.03 16 22 C -0.17 -1.77 10.24 -26.73 -0.27 -2.05 16 23 H 0.06 0.80 6.70 -51.93 -0.35 0.45 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.73 6.38 -51.93 -0.33 0.40 16 31 H 0.07 1.26 6.05 -51.93 -0.31 0.94 16 32 H 0.08 1.68 7.08 -51.93 -0.37 1.31 16 33 H 0.09 1.49 4.24 -51.93 -0.22 1.27 16 34 H -0.01 -0.16 5.22 -51.93 -0.27 -0.43 16 35 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.03 0.53 5.71 -51.93 -0.30 0.24 16 38 H 0.07 1.16 7.62 -51.93 -0.40 0.77 16 39 H 0.36 4.06 7.79 45.56 0.36 4.41 16 40 H 0.11 1.18 8.06 -51.93 -0.42 0.76 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.95 6.47 -51.93 -0.34 0.61 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 333.68 15.07 5.03 5.03 Total: -1.00 -30.27 333.68 -8.67 -38.94 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.09 Total: 5.16 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -1.31 Total: -19.57 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.31 Total: -38.77 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.34 Total: -7.80 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.65 Total: 17.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.27 -8.67 -38.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838865982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.963 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds