Wall clock time and date at job start Mon Mar 30 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47392 * 2 1 4 4 C 1.52995 * 109.47194 * 120.00355 * 2 1 3 5 5 C 1.53001 * 109.47343 * 64.99852 * 4 2 1 6 6 N 1.46896 * 109.47251 * 174.25160 * 5 4 2 7 7 C 1.46907 * 111.00092 * 295.64375 * 6 5 4 8 8 C 1.50702 * 109.47124 * 288.26711 * 7 6 5 9 9 H 1.08001 * 119.99745 * 4.42072 * 8 7 6 10 10 C 1.37871 * 119.99846 * 184.42424 * 8 7 6 11 11 N 1.31518 * 119.99821 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 120.00246 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46869 * 90.00059 * 12 10 8 14 14 H 1.48490 * 109.47365 * 210.00210 * 12 10 8 15 15 H 1.48497 * 109.47104 * 330.00265 * 12 10 8 16 16 C 1.46902 * 111.00343 * 59.59800 * 6 5 4 17 17 C 1.52996 * 109.46818 * 76.41310 * 16 6 5 18 18 H 1.08998 * 109.46959 * 53.39473 * 17 16 6 19 19 O 1.42900 * 109.47480 * 293.39110 * 17 16 6 20 20 C 1.52999 * 109.46991 * 173.38844 * 17 16 6 21 21 C 1.53008 * 117.51659 * 116.28654 * 20 17 16 22 22 C 1.53000 * 117.50331 * 184.91482 * 20 17 16 23 23 H 1.09001 * 109.47063 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47125 * 299.99862 * 1 2 3 25 25 H 1.09004 * 109.46949 * 59.99978 * 1 2 3 26 26 H 1.09010 * 109.47109 * 240.00214 * 2 1 3 27 27 H 1.09001 * 109.47232 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46838 * 300.00387 * 3 2 1 29 29 H 1.09005 * 109.46774 * 59.99569 * 3 2 1 30 30 H 1.08996 * 109.47047 * 304.99993 * 4 2 1 31 31 H 1.09002 * 109.47199 * 184.99638 * 4 2 1 32 32 H 1.09001 * 109.47216 * 54.24986 * 5 4 2 33 33 H 1.09002 * 109.46829 * 294.25052 * 5 4 2 34 34 H 1.09000 * 109.46590 * 48.26411 * 7 6 5 35 35 H 1.08994 * 109.46889 * 168.26305 * 7 6 5 36 36 H 0.97003 * 119.99863 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.46654 * 316.41798 * 16 6 5 38 38 H 1.08993 * 109.47192 * 196.41781 * 16 6 5 39 39 H 0.96699 * 114.00014 * 299.99594 * 19 17 16 40 40 H 1.08998 * 115.55129 * 330.58763 * 20 17 16 41 41 H 1.09003 * 117.49912 * 214.97072 * 21 20 17 42 42 H 1.08996 * 117.49781 * 359.97438 * 21 20 17 43 43 H 1.09005 * 117.49481 * 359.97438 * 22 20 17 44 44 H 1.08997 * 117.50459 * 144.99528 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 7 2.2404 -2.9167 2.3155 7 6 3.7060 -2.9164 2.2151 8 6 4.1330 -3.8294 1.0948 9 1 3.3895 -4.3014 0.4697 10 6 5.4729 -4.0623 0.8681 11 7 5.8456 -4.8596 -0.1093 12 14 6.7590 -3.2455 1.9490 13 1 7.0580 -4.1213 3.1104 14 1 7.9992 -3.0255 1.1627 15 1 6.2420 -1.9404 2.4333 16 6 1.8004 -2.3524 3.5984 17 6 0.3723 -2.8139 3.8956 18 1 0.3214 -3.9009 3.8334 19 8 -0.5223 -2.2397 2.9406 20 6 -0.0265 -2.3644 5.3026 21 6 -1.1819 -1.3689 5.4258 22 6 -1.3835 -2.8294 5.8349 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1264 -0.6444 1.2950 32 1 1.9833 -2.6292 0.2504 33 1 0.5498 -2.2769 1.2450 34 1 4.0559 -1.9042 2.0123 35 1 4.1345 -3.2677 3.1537 36 1 6.7883 -5.0231 -0.2690 37 1 1.8268 -1.2640 3.5446 38 1 2.4650 -2.6931 4.3922 39 1 -0.5293 -1.2727 2.9400 40 1 0.7914 -2.2770 6.0178 41 1 -1.1241 -0.6267 6.2220 42 1 -1.6579 -1.0338 4.5043 43 1 -1.9923 -3.4553 5.1824 44 1 -1.4583 -3.0481 6.9001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838865982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:55 Heat of formation + Delta-G solvation = -56.451550 kcal Electronic energy + Delta-G solvation = -20319.227963 eV Core-core repulsion = 17464.135596 eV Total energy + Delta-G solvation = -2855.092368 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39531 -38.60552 -36.45985 -35.79128 -34.54589 -31.03358 -30.36399 -27.95250 -27.78511 -24.93976 -24.16988 -23.20201 -21.57548 -21.26506 -20.53224 -18.88304 -17.63431 -17.01866 -16.85522 -16.48028 -16.02628 -15.76751 -15.34867 -14.88569 -14.65421 -14.36477 -14.10765 -14.06994 -13.49955 -13.17092 -13.00685 -12.89132 -12.63513 -12.58073 -12.36615 -12.26893 -12.09844 -11.99501 -11.87885 -11.67873 -11.57612 -11.39982 -11.33988 -11.17017 -10.90604 -10.76238 -10.45206 -8.79472 -8.27598 -6.29323 1.31656 1.33318 1.43889 2.33269 2.89354 3.05106 3.20735 3.55389 3.88157 3.96540 4.03210 4.05262 4.13620 4.19141 4.32799 4.41819 4.52460 4.53784 4.68927 4.71519 4.73395 4.83195 4.84522 4.89144 4.94656 5.01517 5.05977 5.07186 5.16093 5.22281 5.26529 5.28251 5.33781 5.35622 5.46125 5.55884 5.57254 5.65041 6.05099 6.49859 6.72339 6.76910 6.87944 7.33369 8.89716 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.007065 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.275629 B = 3962.129183 C = 5153.600596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.139 4.139 5 C 0.062 3.938 6 N -0.541 5.541 7 C 0.169 3.831 8 C -0.509 4.509 9 H 0.031 0.969 10 C 0.005 3.995 11 N -0.951 5.951 12 Si 0.947 3.053 13 H -0.265 1.265 14 H -0.282 1.282 15 H -0.252 1.252 16 C 0.022 3.978 17 C 0.154 3.846 18 H 0.084 0.916 19 O -0.558 6.558 20 C -0.197 4.197 21 C -0.165 4.165 22 C -0.172 4.172 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.105 0.895 34 H -0.005 1.005 35 H 0.021 0.979 36 H 0.265 0.735 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.378 0.622 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.205 13.343 10.329 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 C -0.198 4.198 4 C -0.178 4.178 5 C -0.066 4.066 6 N -0.263 5.263 7 C 0.042 3.958 8 C -0.547 4.547 9 H 0.049 0.951 10 C -0.191 4.191 11 N -0.592 5.592 12 Si 0.770 3.230 13 H -0.190 1.190 14 H -0.208 1.208 15 H -0.175 1.175 16 C -0.106 4.106 17 C 0.094 3.906 18 H 0.102 0.898 19 O -0.366 6.366 20 C -0.216 4.216 21 C -0.202 4.202 22 C -0.209 4.209 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.123 0.877 34 H 0.012 0.988 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.227 0.773 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.331 12.141 10.102 20.668 hybrid contribution 1.647 0.925 0.050 1.890 sum -11.684 13.067 10.152 20.256 Atomic orbital electron populations 1.21799 0.93447 1.01859 1.02411 1.21033 0.97270 0.96183 0.96870 1.21798 1.00169 0.95370 1.02471 1.22144 0.99777 0.97022 0.98827 1.22303 1.00708 0.90702 0.92875 1.62003 1.08114 1.53906 1.02298 1.19996 0.86046 0.94432 0.95335 1.21270 0.92017 1.26965 1.14473 0.95085 1.25850 1.00845 0.95675 0.96759 1.70066 1.17028 1.39096 1.33013 0.85725 0.78221 0.80034 0.79017 1.19003 1.20765 1.17549 1.22909 0.97515 0.98195 0.92013 1.21216 0.86436 0.97484 0.85423 0.89795 1.86577 1.64560 1.25574 1.59845 1.23023 0.93482 1.06871 0.98178 1.23022 1.00632 0.92617 1.03881 1.22932 0.98318 0.98027 1.01654 0.93058 0.91177 0.92193 0.93702 0.94222 0.91730 0.91553 0.90620 0.94596 0.95155 0.87688 0.98768 0.96079 0.92560 0.93052 0.91138 0.77302 0.86937 0.87574 0.87803 0.89423 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.95 71.98 0.64 -2.35 16 2 C -0.09 -2.58 2.92 -10.79 -0.03 -2.61 16 3 C -0.14 -3.24 9.19 71.98 0.66 -2.58 16 4 C -0.14 -4.41 4.04 30.59 0.12 -4.29 16 5 C 0.06 2.35 4.55 86.30 0.39 2.74 16 6 N -0.54 -22.42 4.58 -900.79 -4.13 -26.55 16 7 C 0.17 8.23 3.67 85.56 0.31 8.54 16 8 C -0.51 -30.40 9.15 25.60 0.23 -30.17 16 9 H 0.03 2.09 7.61 -2.91 -0.02 2.07 16 10 C 0.01 0.32 5.47 84.65 0.46 0.78 16 11 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 12 Si 0.95 45.04 27.38 68.60 1.88 46.92 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 15 H -0.25 -11.16 6.67 99.48 0.66 -10.49 16 16 C 0.02 0.68 4.62 86.30 0.40 1.08 16 17 C 0.15 4.09 3.53 30.59 0.11 4.19 16 18 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 19 O -0.56 -14.02 9.58 -148.98 -1.43 -15.45 16 20 C -0.20 -3.97 5.73 -10.79 -0.06 -4.03 16 21 C -0.16 -2.63 9.71 30.60 0.30 -2.33 16 22 C -0.17 -3.12 10.24 30.59 0.31 -2.81 16 23 H 0.05 1.23 6.70 -2.39 -0.02 1.21 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.08 2.00 6.38 -2.39 -0.02 1.99 16 31 H 0.04 1.36 6.05 -2.39 -0.01 1.34 16 32 H 0.03 1.41 7.08 -2.39 -0.02 1.39 16 33 H 0.11 3.59 4.24 -2.39 -0.01 3.58 16 34 H -0.01 -0.25 5.22 -2.39 -0.01 -0.26 16 35 H 0.02 1.01 6.87 -2.39 -0.02 1.00 16 36 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 37 H 0.05 1.43 5.71 -2.39 -0.01 1.42 16 38 H 0.07 2.20 7.62 -2.39 -0.02 2.18 16 39 H 0.38 7.13 7.79 -74.06 -0.58 6.55 16 40 H 0.11 2.17 8.06 -2.39 -0.02 2.15 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 42 H 0.10 1.58 6.47 -2.39 -0.02 1.56 16 43 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -68.88 333.68 0.82 -68.05 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.35 Total: 21.61 kcal Atomic # 6 Polarization: -37.69 SS G_CDS: 3.86 Total: -33.83 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -3.83 Total: -87.31 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.43 Total: -15.45 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -68.88 0.82 -68.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838865982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.601 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds