Wall clock time and date at job start Mon Mar 30 2020 06:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46588 * 2 1 4 4 C 1.50697 * 109.47295 * 240.00020 * 2 1 3 5 5 H 1.07995 * 119.99925 * 236.86148 * 4 2 1 6 6 C 1.37880 * 119.99618 * 56.86044 * 4 2 1 7 7 N 1.31509 * 120.00501 * 5.81945 * 6 4 2 8 8 Si 1.86805 * 119.99707 * 185.82065 * 6 4 2 9 9 H 1.48499 * 109.47369 * 85.02286 * 8 6 4 10 10 H 1.48492 * 109.47230 * 205.02660 * 8 6 4 11 11 H 1.48505 * 109.46898 * 325.02709 * 8 6 4 12 12 C 1.52998 * 109.46947 * 119.99399 * 2 1 3 13 13 N 1.46897 * 109.47711 * 300.00389 * 12 2 1 14 14 C 1.46900 * 110.99855 * 180.02562 * 13 12 2 15 15 C 1.53001 * 109.46744 * 180.02562 * 14 13 12 16 16 O 1.42898 * 109.47317 * 64.99667 * 15 14 13 17 17 C 1.53003 * 109.47161 * 304.99726 * 15 14 13 18 18 C 1.52994 * 109.47291 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47241 * 60.00159 * 18 17 15 20 20 C 1.53003 * 109.46848 * 300.00112 * 19 18 17 21 21 C 1.52994 * 109.47291 * 59.99918 * 20 19 18 22 22 H 1.08999 * 109.47474 * 293.82650 * 1 2 3 23 23 H 1.09000 * 109.47160 * 53.82614 * 1 2 3 24 24 H 1.08998 * 109.46848 * 173.82397 * 1 2 3 25 25 H 1.09010 * 109.46507 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47318 * 299.99398 * 3 2 1 27 27 H 1.08992 * 109.47222 * 60.00143 * 3 2 1 28 28 H 0.97003 * 120.00123 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46577 * 179.97438 * 12 2 1 30 30 H 1.09005 * 109.46723 * 60.00960 * 12 2 1 31 31 H 1.00902 * 110.99453 * 303.95324 * 13 12 2 32 32 H 1.08996 * 109.47052 * 299.99580 * 14 13 12 33 33 H 1.08999 * 109.47542 * 60.00065 * 14 13 12 34 34 H 0.96695 * 114.00371 * 299.99996 * 16 15 14 35 35 H 1.08998 * 109.46652 * 300.00177 * 17 15 14 36 36 H 1.08998 * 109.47162 * 59.99750 * 17 15 14 37 37 H 1.08997 * 109.47380 * 300.00132 * 18 17 15 38 38 H 1.09000 * 109.47138 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47408 * 180.02562 * 19 18 17 40 40 H 1.08998 * 109.47452 * 59.99571 * 19 18 17 41 41 H 1.09001 * 109.47376 * 299.99867 * 20 19 18 42 42 H 1.08998 * 109.47162 * 180.02562 * 20 19 18 43 43 H 1.09000 * 109.47138 * 180.02562 * 21 20 19 44 44 H 1.08998 * 109.47247 * 60.00395 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6945 -1.5579 -1.1321 6 6 1.6468 -0.2782 -2.4816 7 7 0.9349 0.8204 -2.6075 8 14 2.1354 -1.2533 -3.9982 9 1 1.1498 -2.3403 -4.2267 10 1 2.1616 -0.3527 -5.1786 11 1 3.4834 -1.8422 -3.7949 12 6 2.0400 -0.7211 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0219 -0.6944 3.6703 15 6 1.4922 0.0534 4.8955 16 8 0.0674 -0.0473 4.9359 17 6 1.8970 1.5263 4.8084 18 6 1.3680 2.2740 6.0338 19 6 1.9596 1.6568 7.3027 20 6 1.5548 0.1839 7.3898 21 6 2.0839 -0.5638 6.1643 22 1 -0.3634 0.4151 0.9400 23 1 -0.3633 0.6066 -0.8296 24 1 -0.3633 -1.0217 -0.1106 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 0.6639 1.1246 -3.4878 29 1 3.1300 -0.7215 1.2490 30 1 1.6767 -1.7489 1.2493 31 1 1.8198 0.9437 2.4401 32 1 1.6588 -1.7220 3.6874 33 1 3.1118 -0.6938 3.6869 34 1 -0.3754 0.3249 4.1611 35 1 2.9839 1.6031 4.7776 36 1 1.4760 1.9660 3.9043 37 1 0.2812 2.1972 6.0652 38 1 1.6568 3.3233 5.9720 39 1 1.5823 2.1892 8.1758 40 1 3.0464 1.7336 7.2714 41 1 0.4679 0.1070 7.4211 42 1 1.9759 -0.2558 8.2939 43 1 1.7951 -1.6131 6.2262 44 1 3.1707 -0.4871 6.1331 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842160134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:14 Heat of formation + Delta-G solvation = -79.765852 kcal Electronic energy + Delta-G solvation = -20294.792948 eV Core-core repulsion = 17438.689596 eV Total energy + Delta-G solvation = -2856.103352 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.58468 -36.75163 -34.99273 -33.60192 -31.21367 -30.86406 -29.45236 -25.59082 -25.50009 -25.16476 -23.47190 -22.34670 -20.91238 -19.67109 -18.46232 -16.37006 -16.00480 -15.69624 -15.23315 -14.64600 -14.34470 -14.25250 -13.79292 -13.47335 -13.13827 -12.82288 -12.46436 -12.25876 -12.16965 -11.98987 -11.55378 -11.49914 -11.20913 -11.03646 -10.96201 -10.74915 -10.65093 -10.61982 -10.49321 -10.16754 -10.09520 -10.00149 -9.52730 -9.38996 -9.00831 -8.65243 -8.28368 -7.77067 -5.92719 -4.01603 3.31729 3.38212 3.40663 4.38247 4.43030 4.59632 4.73812 4.87068 4.89307 5.14510 5.32673 5.33692 5.35534 5.45063 5.50746 5.62546 5.71448 5.81262 5.92458 5.98483 6.02760 6.15989 6.17082 6.25063 6.33448 6.35192 6.41055 6.47858 6.69572 6.87259 7.05008 7.15372 7.33826 7.43972 7.69270 7.73799 7.82101 7.91709 8.00716 8.19349 8.31067 8.54597 8.99359 9.63102 11.08564 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.047152 B = 0.004333 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.682765 B = 6460.600777 C = 6622.530313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.068 3.932 3 C -0.131 4.131 4 C -0.509 4.509 5 H 0.051 0.949 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.076 3.924 13 N -0.688 5.688 14 C 0.030 3.970 15 C 0.143 3.857 16 O -0.556 6.556 17 C -0.149 4.149 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.105 4.105 22 H 0.022 0.978 23 H 0.069 0.931 24 H 0.020 0.980 25 H 0.018 0.982 26 H 0.083 0.917 27 H 0.008 0.992 28 H 0.258 0.742 29 H 0.012 0.988 30 H 0.056 0.944 31 H 0.336 0.664 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.384 0.616 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.676 1.654 16.417 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.068 3.932 3 C -0.189 4.189 4 C -0.548 4.548 5 H 0.069 0.931 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.716 3.284 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.052 4.052 13 N -0.321 5.321 14 C -0.100 4.100 15 C 0.102 3.898 16 O -0.363 6.363 17 C -0.187 4.187 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.151 4.151 21 C -0.143 4.143 22 H 0.041 0.959 23 H 0.088 0.912 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.102 0.898 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.233 0.767 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.122 1.159 16.827 16.905 hybrid contribution 1.259 -0.085 -1.543 1.994 sum 2.381 1.075 15.284 15.506 Atomic orbital electron populations 1.21620 0.97320 0.99297 0.99296 1.18100 0.93210 0.91908 0.90014 1.21853 0.97694 0.99188 1.00140 1.21085 1.28896 1.14230 0.90552 0.93050 1.24874 0.95149 0.94774 0.98633 1.69847 1.38023 1.21375 1.22993 0.86688 0.78851 0.80075 0.82790 1.20688 1.21387 1.20191 1.22131 0.95459 0.97886 0.89734 1.60643 1.63638 1.06462 1.01362 1.22651 0.97071 0.99363 0.90937 1.21064 0.81889 0.93207 0.93674 1.86367 1.17658 1.84634 1.47632 1.22235 1.01220 0.96292 0.98954 1.21424 1.01228 0.98367 0.94069 1.21537 1.00270 0.96059 0.97744 1.21432 1.01908 0.94926 0.96882 1.21484 0.99505 0.99831 0.93446 0.95928 0.91171 0.96106 0.96284 0.89781 0.97283 0.93184 0.96940 0.92527 0.84333 0.90776 0.95480 0.76725 0.91701 0.90830 0.91289 0.92461 0.92382 0.92474 0.91057 0.92578 0.91433 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 8.05 37.16 0.30 -2.52 16 2 C 0.07 1.63 0.57 -155.66 -0.09 1.54 16 3 C -0.13 -3.05 7.95 37.16 0.30 -2.75 16 4 C -0.51 -13.68 8.01 -34.44 -0.28 -13.96 16 5 H 0.05 1.39 7.75 -52.49 -0.41 0.98 16 6 C 0.07 1.81 5.13 -17.82 -0.09 1.72 16 7 N -0.88 -24.37 9.46 55.43 0.52 -23.85 16 8 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 C 0.08 1.58 4.59 -3.83 -0.02 1.56 16 13 N -0.69 -11.73 5.13 -113.78 -0.58 -12.32 16 14 C 0.03 0.44 4.93 -3.82 -0.02 0.42 16 15 C 0.14 1.81 0.79 -90.62 -0.07 1.74 16 16 O -0.56 -7.72 11.63 -35.23 -0.41 -8.13 16 17 C -0.15 -1.77 4.46 -26.73 -0.12 -1.88 16 18 C -0.11 -1.21 5.78 -26.73 -0.15 -1.36 16 19 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 20 C -0.11 -1.18 5.78 -26.73 -0.15 -1.33 16 21 C -0.10 -1.18 4.94 -26.73 -0.13 -1.31 16 22 H 0.02 0.48 7.42 -51.93 -0.39 0.10 16 23 H 0.07 1.84 6.25 -51.93 -0.32 1.52 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.08 2.18 6.11 -51.93 -0.32 1.87 16 27 H 0.01 0.17 6.57 -51.93 -0.34 -0.17 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.34 5.64 4.66 -39.29 -0.18 5.46 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.38 5.14 8.66 45.56 0.39 5.53 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.93 6.51 -51.93 -0.34 0.59 16 37 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -26.96 327.42 -8.57 -35.53 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -7.33 Total: 7.18 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -0.69 Total: -19.45 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.06 Total: -36.16 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.41 Total: -8.13 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.96 -8.57 -35.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842160134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.236 kcal (2) G-P(sol) polarization free energy of solvation -26.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds