Wall clock time and date at job start Mon Mar 30 2020 06:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46588 * 2 1 4 4 C 1.50697 * 109.47295 * 240.00020 * 2 1 3 5 5 H 1.07995 * 119.99925 * 236.86148 * 4 2 1 6 6 C 1.37880 * 119.99618 * 56.86044 * 4 2 1 7 7 N 1.31509 * 120.00501 * 5.81945 * 6 4 2 8 8 Si 1.86805 * 119.99707 * 185.82065 * 6 4 2 9 9 H 1.48499 * 109.47369 * 85.02286 * 8 6 4 10 10 H 1.48492 * 109.47230 * 205.02660 * 8 6 4 11 11 H 1.48505 * 109.46898 * 325.02709 * 8 6 4 12 12 C 1.52998 * 109.46947 * 119.99399 * 2 1 3 13 13 N 1.46897 * 109.47711 * 300.00389 * 12 2 1 14 14 C 1.46900 * 110.99855 * 180.02562 * 13 12 2 15 15 C 1.53001 * 109.46744 * 180.02562 * 14 13 12 16 16 O 1.42898 * 109.47317 * 64.99667 * 15 14 13 17 17 C 1.53003 * 109.47161 * 304.99726 * 15 14 13 18 18 C 1.52994 * 109.47291 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47241 * 60.00159 * 18 17 15 20 20 C 1.53003 * 109.46848 * 300.00112 * 19 18 17 21 21 C 1.52994 * 109.47291 * 59.99918 * 20 19 18 22 22 H 1.08999 * 109.47474 * 293.82650 * 1 2 3 23 23 H 1.09000 * 109.47160 * 53.82614 * 1 2 3 24 24 H 1.08998 * 109.46848 * 173.82397 * 1 2 3 25 25 H 1.09010 * 109.46507 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47318 * 299.99398 * 3 2 1 27 27 H 1.08992 * 109.47222 * 60.00143 * 3 2 1 28 28 H 0.97003 * 120.00123 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46577 * 179.97438 * 12 2 1 30 30 H 1.09005 * 109.46723 * 60.00960 * 12 2 1 31 31 H 1.00902 * 110.99453 * 303.95324 * 13 12 2 32 32 H 1.08996 * 109.47052 * 299.99580 * 14 13 12 33 33 H 1.08999 * 109.47542 * 60.00065 * 14 13 12 34 34 H 0.96695 * 114.00371 * 299.99996 * 16 15 14 35 35 H 1.08998 * 109.46652 * 300.00177 * 17 15 14 36 36 H 1.08998 * 109.47162 * 59.99750 * 17 15 14 37 37 H 1.08997 * 109.47380 * 300.00132 * 18 17 15 38 38 H 1.09000 * 109.47138 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47408 * 180.02562 * 19 18 17 40 40 H 1.08998 * 109.47452 * 59.99571 * 19 18 17 41 41 H 1.09001 * 109.47376 * 299.99867 * 20 19 18 42 42 H 1.08998 * 109.47162 * 180.02562 * 20 19 18 43 43 H 1.09000 * 109.47138 * 180.02562 * 21 20 19 44 44 H 1.08998 * 109.47247 * 60.00395 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6945 -1.5579 -1.1321 6 6 1.6468 -0.2782 -2.4816 7 7 0.9349 0.8204 -2.6075 8 14 2.1354 -1.2533 -3.9982 9 1 1.1498 -2.3403 -4.2267 10 1 2.1616 -0.3527 -5.1786 11 1 3.4834 -1.8422 -3.7949 12 6 2.0400 -0.7211 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0219 -0.6944 3.6703 15 6 1.4922 0.0534 4.8955 16 8 0.0674 -0.0473 4.9359 17 6 1.8970 1.5263 4.8084 18 6 1.3680 2.2740 6.0338 19 6 1.9596 1.6568 7.3027 20 6 1.5548 0.1839 7.3898 21 6 2.0839 -0.5638 6.1643 22 1 -0.3634 0.4151 0.9400 23 1 -0.3633 0.6066 -0.8296 24 1 -0.3633 -1.0217 -0.1106 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 0.6639 1.1246 -3.4878 29 1 3.1300 -0.7215 1.2490 30 1 1.6767 -1.7489 1.2493 31 1 1.8198 0.9437 2.4401 32 1 1.6588 -1.7220 3.6874 33 1 3.1118 -0.6938 3.6869 34 1 -0.3754 0.3249 4.1611 35 1 2.9839 1.6031 4.7776 36 1 1.4760 1.9660 3.9043 37 1 0.2812 2.1972 6.0652 38 1 1.6568 3.3233 5.9720 39 1 1.5823 2.1892 8.1758 40 1 3.0464 1.7336 7.2714 41 1 0.4679 0.1070 7.4211 42 1 1.9759 -0.2558 8.2939 43 1 1.7951 -1.6131 6.2262 44 1 3.1707 -0.4871 6.1331 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842160134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:13 Heat of formation + Delta-G solvation = -95.823017 kcal Electronic energy + Delta-G solvation = -20295.489239 eV Core-core repulsion = 17438.689596 eV Total energy + Delta-G solvation = -2856.799642 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60766 -38.42121 -36.06570 -35.14879 -32.97664 -31.75055 -30.66456 -27.51150 -27.25266 -26.77235 -24.83666 -23.35274 -21.91160 -20.59816 -20.32459 -17.97747 -17.39899 -16.96397 -16.51982 -16.36160 -15.65582 -15.24217 -15.07388 -14.72619 -14.40667 -14.28228 -13.93793 -13.85164 -13.21977 -13.16902 -13.00964 -12.94821 -12.67457 -12.57895 -12.50669 -12.35462 -12.10776 -12.07632 -11.90803 -11.61334 -11.34190 -11.30416 -11.19410 -10.70808 -10.62451 -10.44222 -10.32616 -9.21744 -7.98024 -6.13249 1.41839 1.44134 1.51332 2.46091 3.24422 3.30395 3.45838 3.80941 3.89739 3.93585 4.24797 4.36123 4.42699 4.52775 4.54774 4.62312 4.64263 4.70568 4.77461 4.86013 4.88796 4.97602 5.03176 5.09624 5.15796 5.17734 5.28125 5.32192 5.32841 5.39013 5.42222 5.46287 5.54075 5.62992 5.70261 5.77378 6.12594 6.23085 6.33066 6.47753 6.61980 6.94909 6.95659 7.53883 9.00664 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.047152 B = 0.004333 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.682765 B = 6460.600777 C = 6622.530313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.059 3.941 3 C -0.119 4.119 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 0.942 3.058 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.091 3.909 13 N -0.683 5.683 14 C 0.032 3.968 15 C 0.146 3.854 16 O -0.565 6.565 17 C -0.147 4.147 18 C -0.112 4.112 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.106 4.106 22 H 0.042 0.958 23 H 0.044 0.956 24 H 0.007 0.993 25 H 0.015 0.985 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.257 0.743 29 H 0.007 0.993 30 H 0.045 0.955 31 H 0.340 0.660 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.384 0.616 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.350 1.839 17.776 18.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.058 3.942 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.175 4.175 7 N -0.540 5.540 8 Si 0.769 3.231 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.038 4.038 13 N -0.317 5.317 14 C -0.097 4.097 15 C 0.105 3.895 16 O -0.372 6.372 17 C -0.185 4.185 18 C -0.149 4.149 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.144 4.144 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.026 0.974 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.161 0.839 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.798 1.345 18.200 18.338 hybrid contribution 1.041 -0.148 -1.938 2.205 sum 2.839 1.197 16.263 16.552 Atomic orbital electron populations 1.21453 0.97486 0.97996 0.99218 1.18154 0.93040 0.92377 0.90591 1.21671 0.97340 0.98705 0.99991 1.21417 1.29003 1.14312 0.92116 0.93927 1.25503 0.95351 0.95585 1.01012 1.69973 1.38528 1.22163 1.23339 0.85828 0.78527 0.78851 0.79901 1.20542 1.21053 1.19890 1.21788 0.94905 0.97158 0.89989 1.60533 1.63606 1.06524 1.01006 1.22693 0.97499 0.98951 0.90607 1.21113 0.81297 0.93744 0.93352 1.86374 1.18371 1.84730 1.47706 1.22204 1.01533 0.95536 0.99199 1.21413 1.00631 0.98869 0.94014 1.21540 1.00768 0.95516 0.97597 1.21410 1.00992 0.95454 0.97016 1.21532 1.00218 0.99591 0.93072 0.93920 0.93661 0.97382 0.96572 0.92565 0.94701 0.93319 0.97452 0.93600 0.83872 0.91755 0.94778 0.76689 0.91102 0.91798 0.92261 0.91502 0.91230 0.91599 0.92532 0.90983 0.91906 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.97 8.05 71.98 0.58 -4.39 16 2 C 0.06 2.81 0.57 -52.93 -0.03 2.78 16 3 C -0.12 -5.49 7.95 71.98 0.57 -4.92 16 4 C -0.53 -28.62 8.01 25.60 0.20 -28.41 16 5 H 0.04 2.31 7.75 -2.91 -0.02 2.29 16 6 C 0.02 1.35 5.13 84.66 0.43 1.78 16 7 N -0.90 -50.08 9.46 21.45 0.20 -49.87 16 8 Si 0.94 43.38 29.54 68.60 2.03 45.40 16 9 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.09 3.70 4.59 86.30 0.40 4.10 16 13 N -0.68 -22.45 5.13 -513.89 -2.64 -25.09 16 14 C 0.03 0.90 4.93 86.30 0.43 1.33 16 15 C 0.15 3.46 0.79 -10.79 -0.01 3.46 16 16 O -0.56 -15.04 11.63 -148.98 -1.73 -16.77 16 17 C -0.15 -3.18 4.46 30.59 0.14 -3.04 16 18 C -0.11 -2.13 5.78 30.59 0.18 -1.96 16 19 C -0.12 -1.94 5.92 30.60 0.18 -1.76 16 20 C -0.11 -2.04 5.78 30.59 0.18 -1.86 16 21 C -0.11 -2.18 4.94 30.59 0.15 -2.02 16 22 H 0.04 1.81 7.42 -2.39 -0.02 1.80 16 23 H 0.04 2.38 6.25 -2.39 -0.01 2.37 16 24 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.06 2.92 6.11 -2.39 -0.01 2.90 16 27 H 0.03 1.38 6.57 -2.39 -0.02 1.36 16 28 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.05 1.95 8.14 -2.38 -0.02 1.94 16 31 H 0.34 10.83 4.66 -89.69 -0.42 10.41 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.38 9.91 8.66 -74.06 -0.64 9.27 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.50 6.51 -2.39 -0.02 1.49 16 37 H 0.06 1.25 7.68 -2.39 -0.02 1.23 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.21 7.68 -2.39 -0.02 1.19 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -56.48 327.42 1.16 -55.32 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.10 Total: 25.92 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 3.40 Total: -34.92 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -2.43 Total: -74.96 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -1.73 Total: -16.77 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -56.48 1.16 -55.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842160134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.503 kcal (2) G-P(sol) polarization free energy of solvation -56.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds