Wall clock time and date at job start Mon Mar 30 2020 07:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47458 * 2 1 4 4 C 1.53004 * 109.46979 * 120.00239 * 2 1 3 5 5 O 1.42906 * 109.47342 * 175.00076 * 4 2 1 6 6 N 1.41592 * 113.99891 * 174.66534 * 5 4 2 7 7 C 1.36941 * 120.00551 * 275.47275 * 6 5 4 8 8 H 1.08003 * 119.99418 * 31.22056 * 7 6 5 9 9 C 1.38810 * 120.00206 * 211.21895 * 7 6 5 10 10 N 1.31612 * 120.00258 * 24.82334 * 9 7 6 11 11 Si 1.86805 * 119.99805 * 204.82353 * 9 7 6 12 12 H 1.48500 * 109.47263 * 60.00222 * 11 9 7 13 13 H 1.48501 * 109.46832 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46911 * 300.00082 * 11 9 7 15 15 C 1.46509 * 119.99832 * 95.47962 * 6 5 4 16 16 C 1.52999 * 109.46695 * 250.64582 * 15 6 5 17 17 C 1.53000 * 109.47539 * 66.09204 * 16 15 6 18 18 C 1.52998 * 109.47010 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.47145 * 299.99466 * 18 17 16 20 20 C 1.52999 * 109.47101 * 60.00319 * 19 18 17 21 21 C 1.53002 * 109.46840 * 300.00217 * 20 19 18 22 22 H 1.08998 * 109.47226 * 300.00029 * 1 2 3 23 23 H 1.08996 * 109.46614 * 60.00163 * 1 2 3 24 24 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47541 * 239.99549 * 2 1 3 26 26 H 1.08998 * 109.47086 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.46878 * 300.00056 * 3 2 1 28 28 H 1.08998 * 109.46926 * 59.99787 * 3 2 1 29 29 H 1.09000 * 109.47441 * 54.99711 * 4 2 1 30 30 H 1.09008 * 109.46963 * 294.99699 * 4 2 1 31 31 H 0.97003 * 120.00323 * 179.97438 * 10 9 7 32 32 H 1.08996 * 109.47415 * 130.64288 * 15 6 5 33 33 H 1.09002 * 109.46866 * 10.64053 * 15 6 5 34 34 H 1.09001 * 109.47378 * 306.08530 * 16 15 6 35 35 H 1.09004 * 109.46727 * 299.99363 * 17 16 15 36 36 H 1.08993 * 109.47205 * 59.99605 * 17 16 15 37 37 H 1.09003 * 109.46946 * 179.97438 * 18 17 16 38 38 H 1.08993 * 109.47472 * 59.99752 * 18 17 16 39 39 H 1.09001 * 109.46856 * 300.00503 * 19 18 17 40 40 H 1.09000 * 109.47132 * 180.02562 * 19 18 17 41 41 H 1.08995 * 109.47313 * 180.02562 * 20 19 18 42 42 H 1.08999 * 109.46922 * 59.99591 * 20 19 18 43 43 H 1.08993 * 109.47186 * 299.99698 * 21 20 19 44 44 H 1.09003 * 109.46925 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 8 3.4642 -0.8239 1.1921 6 7 4.0494 -1.3711 2.3595 7 6 4.3264 -0.5631 3.4300 8 1 3.7057 0.2974 3.6318 9 6 5.4047 -0.8501 4.2555 10 7 6.4216 -1.5454 3.7922 11 14 5.4126 -0.2495 6.0244 12 1 4.2466 -0.8197 6.7460 13 1 6.6669 -0.6851 6.6894 14 1 5.3302 1.2331 6.0440 15 6 4.3589 -2.8017 2.4223 16 6 3.3972 -3.4893 3.3934 17 6 1.9757 -3.4312 2.8306 18 6 1.0140 -4.1182 3.8022 19 6 1.4308 -5.5791 3.9848 20 6 2.8523 -5.6373 4.5476 21 6 3.8140 -4.9502 3.5761 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6053 -1.7199 1.2952 30 1 1.7516 -0.1583 2.1370 31 1 7.1754 -1.7456 4.3690 32 1 5.3835 -2.9370 2.7686 33 1 4.2495 -3.2409 1.4306 34 1 3.4278 -2.9801 4.3567 35 1 1.6786 -2.3904 2.7010 36 1 1.9452 -3.9404 1.8675 37 1 0.0012 -4.0764 3.4014 38 1 1.0447 -3.6086 4.7651 39 1 1.4001 -6.0887 3.0217 40 1 0.7454 -6.0687 4.6766 41 1 3.1494 -6.6780 4.6773 42 1 2.8830 -5.1276 5.5106 43 1 3.7834 -5.4598 2.6131 44 1 4.8267 -4.9913 3.9772 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844425861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:33 Heat of formation + Delta-G solvation = -29.050217 kcal Electronic energy + Delta-G solvation = -20756.461815 eV Core-core repulsion = 17902.557658 eV Total energy + Delta-G solvation = -2853.904157 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.80141 -38.30464 -36.47748 -34.70575 -33.04422 -31.58481 -30.73763 -28.02564 -27.34930 -26.58433 -24.31497 -23.26341 -21.80985 -21.09831 -20.54035 -18.91283 -17.77714 -16.81421 -16.32981 -16.07903 -15.73505 -15.36227 -15.05114 -14.89858 -14.79825 -14.49512 -13.65082 -13.58232 -13.42547 -13.24752 -13.02962 -12.99013 -12.84455 -12.77450 -12.40199 -12.23458 -12.14248 -11.98623 -11.94004 -11.83289 -11.62204 -11.41457 -11.22545 -10.98339 -10.80113 -10.61637 -10.35534 -8.80205 -7.90291 -5.48162 1.42844 1.46335 1.52817 2.07536 2.72692 3.16775 3.86021 3.91567 3.99929 4.02150 4.09241 4.12595 4.38307 4.45004 4.55330 4.62663 4.68920 4.70058 4.74367 4.76430 4.78274 4.84023 4.88433 4.91964 4.98786 5.02421 5.06606 5.17132 5.19307 5.24452 5.29732 5.38767 5.41191 5.43788 5.46169 5.48870 5.55185 5.67791 5.77593 5.87815 6.40804 7.07474 7.85010 8.30636 9.07015 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.012556 B = 0.009926 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.498029 B = 2820.277482 C = 4368.057410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 C -0.137 4.137 4 C 0.040 3.960 5 O -0.217 6.217 6 N -0.463 5.463 7 C -0.260 4.260 8 H 0.054 0.946 9 C -0.032 4.032 10 N -0.910 5.910 11 Si 0.970 3.030 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.275 1.275 15 C 0.164 3.836 16 C -0.091 4.091 17 C -0.111 4.111 18 C -0.115 4.115 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.106 4.106 22 H 0.054 0.946 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.022 0.978 31 H 0.257 0.743 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.888 -5.332 -1.997 13.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 C -0.194 4.194 4 C -0.039 4.039 5 O -0.216 6.216 6 N -0.234 5.234 7 C -0.389 4.389 8 H 0.072 0.928 9 C -0.230 4.230 10 N -0.554 5.554 11 Si 0.796 3.204 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.201 1.201 15 C 0.041 3.959 16 C -0.111 4.111 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.145 4.145 22 H 0.073 0.927 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.639 -5.291 -2.180 12.969 hybrid contribution 0.429 0.618 0.867 1.148 sum -11.210 -4.672 -1.312 12.216 Atomic orbital electron populations 1.21710 0.92162 1.02477 1.02759 1.21150 0.97158 0.96285 0.96546 1.21709 1.00212 0.95650 1.01844 1.23149 0.84529 0.98851 0.97371 1.90324 1.18912 1.83375 1.28978 1.46266 1.67907 1.03106 1.06143 1.19266 1.08278 1.11612 0.99721 0.92844 1.25688 0.93120 1.00996 1.03220 1.70092 1.06304 1.43176 1.35830 0.85309 0.77190 0.78342 0.79517 1.20081 1.20925 1.20111 1.21310 1.00016 0.78790 0.95782 1.21423 0.95630 0.95135 0.98953 1.21736 0.94719 1.00212 0.98181 1.21524 0.98574 0.96350 0.98814 1.21497 0.95999 0.95811 1.01486 1.21504 0.95281 1.00373 0.97959 1.21455 0.98595 0.94539 0.99863 0.92668 0.90269 0.92031 0.91142 0.94835 0.90599 0.93397 0.92833 0.95980 0.93333 0.90740 0.95077 0.94204 0.92680 0.92894 0.91032 0.93423 0.91447 0.90582 0.90510 0.93258 0.91754 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.19 71.98 0.66 -2.46 16 2 C -0.09 -2.87 3.16 -10.79 -0.03 -2.90 16 3 C -0.14 -4.27 9.09 71.98 0.65 -3.62 16 4 C 0.04 1.59 4.48 71.98 0.32 1.92 16 5 O -0.22 -11.05 10.69 -38.77 -0.41 -11.46 16 6 N -0.46 -25.01 2.69 -343.43 -0.93 -25.94 16 7 C -0.26 -14.89 9.34 84.03 0.79 -14.10 16 8 H 0.05 3.11 7.94 -2.91 -0.02 3.09 16 9 C -0.03 -1.77 5.03 84.86 0.43 -1.34 16 10 N -0.91 -53.08 11.18 21.65 0.24 -52.84 16 11 Si 0.97 44.82 29.62 68.60 2.03 46.85 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 15 C 0.16 8.11 5.00 86.38 0.43 8.54 16 16 C -0.09 -3.74 2.24 -10.79 -0.02 -3.77 16 17 C -0.11 -3.95 4.24 30.59 0.13 -3.82 16 18 C -0.12 -3.29 5.92 30.60 0.18 -3.11 16 19 C -0.11 -2.69 5.92 30.60 0.18 -2.51 16 20 C -0.11 -3.13 5.92 30.59 0.18 -2.95 16 21 C -0.11 -3.63 5.20 30.60 0.16 -3.47 16 22 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.03 1.23 7.82 -2.39 -0.02 1.21 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 2.05 5.29 -2.39 -0.01 2.04 16 30 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.08 4.16 5.48 -2.39 -0.01 4.14 16 33 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 34 H 0.04 1.90 7.76 -2.39 -0.02 1.88 16 35 H 0.05 2.17 4.46 -2.38 -0.01 2.16 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -63.58 335.72 5.91 -57.66 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.92 Total: 19.32 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 4.06 Total: -33.59 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -0.68 Total: -78.78 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.41 Total: -11.46 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -63.58 5.91 -57.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844425861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.613 kcal (2) G-P(sol) polarization free energy of solvation -63.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds