Wall clock time and date at job start Mon Mar 30 2020 06:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47423 * 2 1 4 4 C 1.53003 * 109.47023 * 119.99633 * 2 1 3 5 5 H 1.08999 * 109.57284 * 300.15958 * 4 2 1 6 6 C 1.53096 * 109.52014 * 60.31381 * 4 2 1 7 7 O 1.42930 * 109.41898 * 177.51791 * 6 4 2 8 8 C 1.42904 * 114.08305 * 298.84863 * 7 6 4 9 9 C 1.53093 * 109.42351 * 61.15476 * 8 7 6 10 10 C 1.53178 * 109.52445 * 179.97438 * 4 2 1 11 11 H 1.09002 * 109.54068 * 63.24617 * 10 4 2 12 12 N 1.46900 * 109.61450 * 303.02515 * 10 4 2 13 13 C 1.46908 * 110.99578 * 155.39951 * 12 10 4 14 14 C 1.52998 * 109.46970 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47011 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46816 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00213 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99807 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00072 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99945 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47105 * 60.00424 * 20 18 16 22 22 H 1.48506 * 109.46738 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46953 * 300.00365 * 20 18 16 24 24 H 1.09002 * 109.47419 * 300.00703 * 1 2 3 25 25 H 1.09004 * 109.47231 * 60.00553 * 1 2 3 26 26 H 1.09003 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47419 * 239.99297 * 2 1 3 28 28 H 1.09002 * 109.47397 * 59.99283 * 3 2 1 29 29 H 1.09000 * 109.47445 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46911 * 299.99623 * 3 2 1 31 31 H 1.09003 * 109.48254 * 297.49434 * 6 4 2 32 32 H 1.08992 * 109.48175 * 57.53333 * 6 4 2 33 33 H 1.09002 * 109.48241 * 301.16394 * 8 7 6 34 34 H 1.08999 * 109.47648 * 181.13988 * 8 7 6 35 35 H 1.09000 * 109.52228 * 62.29092 * 9 8 7 36 36 H 1.08998 * 109.52401 * 182.47941 * 9 8 7 37 37 H 1.00903 * 110.99759 * 279.34918 * 12 10 4 38 38 H 1.08999 * 109.46641 * 300.00080 * 13 12 10 39 39 H 1.09002 * 109.47129 * 59.99894 * 13 12 10 40 40 H 1.09008 * 109.46645 * 299.99659 * 14 13 12 41 41 H 1.08998 * 109.47453 * 59.99166 * 14 13 12 42 42 H 1.08996 * 109.46796 * 299.99461 * 15 14 13 43 43 H 1.09002 * 109.47182 * 59.99700 * 15 14 13 44 44 H 0.97007 * 120.00120 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6752 -0.2102 2.1404 6 6 1.5367 -2.1671 1.2466 7 8 2.0615 -2.8550 2.3842 8 6 3.4883 -2.9284 2.4143 9 6 4.0699 -1.5131 2.4639 10 6 3.5717 -0.7225 1.2503 11 1 3.9371 0.3028 1.3084 12 7 4.0651 -1.3508 0.0175 13 6 5.4170 -0.8782 -0.3096 14 6 5.8955 -1.5527 -1.5968 15 6 7.3038 -1.0609 -1.9371 16 6 7.7753 -1.7257 -3.2047 17 1 7.1344 -2.4283 -3.7166 18 6 9.0245 -1.4362 -3.7115 19 7 9.8047 -0.5803 -3.0884 20 14 9.6087 -2.2597 -5.2831 21 1 8.6834 -1.9195 -6.3937 22 1 10.9757 -1.7825 -5.6133 23 1 9.6317 -3.7321 -5.0914 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 0.4475 -2.1730 1.2890 32 1 1.8679 -2.6655 0.3357 33 1 3.8452 -3.4369 1.5186 34 1 3.8052 -3.4828 3.2976 35 1 3.7462 -1.0182 3.3795 36 1 5.1584 -1.5657 2.4424 37 1 4.0414 -2.3570 0.0900 38 1 5.3998 0.2025 -0.4507 39 1 6.0962 -1.1274 0.5058 40 1 5.9126 -2.6335 -1.4560 41 1 5.2162 -1.3032 -2.4120 42 1 7.2871 0.0198 -2.0778 43 1 7.9828 -1.3108 -1.1219 44 1 10.6837 -0.3768 -3.4447 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924940880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:34 Heat of formation + Delta-G solvation = -80.756832 kcal Electronic energy + Delta-G solvation = -19906.131798 eV Core-core repulsion = 17049.985475 eV Total energy + Delta-G solvation = -2856.146324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19606 -36.44937 -35.66996 -33.66367 -31.97957 -30.19914 -29.49161 -27.46881 -25.92247 -24.32646 -23.81374 -22.51206 -20.38439 -20.18981 -19.09216 -16.75157 -16.24878 -16.16099 -15.53310 -14.92523 -14.65193 -14.48568 -14.34199 -13.80230 -13.76709 -13.42349 -12.61120 -12.48406 -12.28385 -12.20274 -12.17393 -11.72070 -11.57224 -11.43199 -11.23531 -11.13692 -10.83910 -10.60487 -10.57109 -10.54239 -10.38020 -10.16529 -9.69525 -9.39089 -9.31497 -9.05635 -8.33670 -8.14014 -5.98968 -4.01144 3.34056 3.38204 3.40943 3.80129 4.33080 4.48535 4.61718 4.73873 4.81352 4.90491 5.04009 5.13380 5.19267 5.35483 5.36819 5.39496 5.56926 5.60313 5.65653 5.68879 5.78495 5.82218 5.86342 5.90602 5.91059 5.96461 6.01049 6.07901 6.21266 6.31609 6.39868 6.55296 6.71682 6.78100 7.12657 7.13476 7.33808 7.60087 7.68679 7.83831 8.01235 8.44555 9.05837 9.62852 11.12416 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026541 B = 0.004140 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.737307 B = 6761.603255 C = 7177.265191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 C -0.144 4.144 4 C -0.101 4.101 5 H 0.073 0.927 6 C 0.062 3.938 7 O -0.386 6.386 8 C 0.060 3.940 9 C -0.188 4.188 10 C 0.086 3.914 11 H 0.083 0.917 12 N -0.681 5.681 13 C 0.060 3.940 14 C -0.106 4.106 15 C 0.023 3.977 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.334 0.666 38 H 0.066 0.934 39 H 0.023 0.977 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.723 -0.066 10.794 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 C -0.201 4.201 4 C -0.121 4.121 5 H 0.091 0.909 6 C -0.014 4.014 7 O -0.305 6.305 8 C -0.017 4.017 9 C -0.228 4.228 10 C -0.024 4.024 11 H 0.101 0.899 12 N -0.313 5.313 13 C -0.069 4.069 14 C -0.144 4.144 15 C -0.015 4.015 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.154 0.846 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.969 0.397 10.501 19.960 hybrid contribution 1.259 -0.681 -0.331 1.469 sum -15.710 -0.283 10.169 18.716 Atomic orbital electron populations 1.21944 0.96131 1.01356 1.01405 1.20955 0.94218 0.96215 0.98657 1.21813 1.01654 0.95796 1.00849 1.21786 0.94959 0.96549 0.98782 0.90899 1.22733 0.98572 0.91426 0.88700 1.87912 1.20257 1.76698 1.45599 1.22530 0.81234 0.95994 1.01895 1.22858 1.01575 0.97724 1.00609 1.21655 0.94384 0.98683 0.87716 0.89886 1.60718 1.25728 1.11486 1.33321 1.22147 0.86732 1.00130 0.97864 1.21614 0.99629 0.98535 0.94647 1.19051 0.89642 0.96493 0.96291 1.21217 1.00516 1.25139 1.08897 0.92765 1.25022 0.96849 0.95255 0.97318 1.69957 1.09655 1.34300 1.39718 0.86664 0.77764 0.79795 0.83809 1.20218 1.21305 1.20278 0.93155 0.92822 0.92808 0.89204 0.93594 0.92155 0.92999 0.89128 0.92396 0.93090 0.89056 0.90856 0.90724 0.84630 0.91533 0.95846 0.93830 0.92576 0.96629 0.96897 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.85 37.16 0.33 -1.03 16 2 C -0.08 -0.87 2.32 -90.62 -0.21 -1.08 16 3 C -0.14 -1.55 8.84 37.16 0.33 -1.22 16 4 C -0.10 -1.08 1.80 -90.48 -0.16 -1.25 16 5 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 6 C 0.06 0.67 5.47 37.21 0.20 0.88 16 7 O -0.39 -4.71 10.77 -35.23 -0.38 -5.09 16 8 C 0.06 0.66 6.58 37.21 0.24 0.91 16 9 C -0.19 -2.09 5.72 -26.59 -0.15 -2.24 16 10 C 0.09 1.02 1.90 -67.53 -0.13 0.89 16 11 H 0.08 1.04 6.29 -51.93 -0.33 0.71 16 12 N -0.68 -9.31 5.00 -106.53 -0.53 -9.84 16 13 C 0.06 1.00 5.49 -3.82 -0.02 0.97 16 14 C -0.11 -2.17 5.41 -26.73 -0.14 -2.32 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 17 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 20 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.45 6.50 -51.93 -0.34 0.11 16 27 H 0.09 1.12 7.54 -51.93 -0.39 0.72 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.73 6.51 -51.93 -0.34 0.39 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.87 6.58 -51.93 -0.34 0.53 16 32 H 0.06 0.65 7.37 -51.93 -0.38 0.27 16 33 H 0.05 0.57 6.43 -51.93 -0.33 0.23 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.86 7.40 -51.93 -0.38 0.48 16 37 H 0.33 4.50 5.82 -39.29 -0.23 4.27 16 38 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 39 H 0.02 0.39 7.40 -51.93 -0.38 0.01 16 40 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 333.34 15.07 5.02 5.02 Total: -1.00 -29.54 333.34 -8.50 -38.03 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.06 Total: 0.11 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -0.26 Total: -18.63 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.20 Total: -36.23 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.38 Total: -5.09 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.54 -8.50 -38.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.723 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds