Wall clock time and date at job start Mon Mar 30 2020 06:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47423 * 2 1 4 4 C 1.53003 * 109.47023 * 119.99633 * 2 1 3 5 5 H 1.08999 * 109.57284 * 300.15958 * 4 2 1 6 6 C 1.53096 * 109.52014 * 60.31381 * 4 2 1 7 7 O 1.42930 * 109.41898 * 177.51791 * 6 4 2 8 8 C 1.42904 * 114.08305 * 298.84863 * 7 6 4 9 9 C 1.53093 * 109.42351 * 61.15476 * 8 7 6 10 10 C 1.53178 * 109.52445 * 179.97438 * 4 2 1 11 11 H 1.09002 * 109.54068 * 63.24617 * 10 4 2 12 12 N 1.46900 * 109.61450 * 303.02515 * 10 4 2 13 13 C 1.46908 * 110.99578 * 155.39951 * 12 10 4 14 14 C 1.52998 * 109.46970 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47011 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46816 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00213 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99807 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00072 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99945 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47105 * 60.00424 * 20 18 16 22 22 H 1.48506 * 109.46738 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46953 * 300.00365 * 20 18 16 24 24 H 1.09002 * 109.47419 * 300.00703 * 1 2 3 25 25 H 1.09004 * 109.47231 * 60.00553 * 1 2 3 26 26 H 1.09003 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47419 * 239.99297 * 2 1 3 28 28 H 1.09002 * 109.47397 * 59.99283 * 3 2 1 29 29 H 1.09000 * 109.47445 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46911 * 299.99623 * 3 2 1 31 31 H 1.09003 * 109.48254 * 297.49434 * 6 4 2 32 32 H 1.08992 * 109.48175 * 57.53333 * 6 4 2 33 33 H 1.09002 * 109.48241 * 301.16394 * 8 7 6 34 34 H 1.08999 * 109.47648 * 181.13988 * 8 7 6 35 35 H 1.09000 * 109.52228 * 62.29092 * 9 8 7 36 36 H 1.08998 * 109.52401 * 182.47941 * 9 8 7 37 37 H 1.00903 * 110.99759 * 279.34918 * 12 10 4 38 38 H 1.08999 * 109.46641 * 300.00080 * 13 12 10 39 39 H 1.09002 * 109.47129 * 59.99894 * 13 12 10 40 40 H 1.09008 * 109.46645 * 299.99659 * 14 13 12 41 41 H 1.08998 * 109.47453 * 59.99166 * 14 13 12 42 42 H 1.08996 * 109.46796 * 299.99461 * 15 14 13 43 43 H 1.09002 * 109.47182 * 59.99700 * 15 14 13 44 44 H 0.97007 * 120.00120 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6752 -0.2102 2.1404 6 6 1.5367 -2.1671 1.2466 7 8 2.0615 -2.8550 2.3842 8 6 3.4883 -2.9284 2.4143 9 6 4.0699 -1.5131 2.4639 10 6 3.5717 -0.7225 1.2503 11 1 3.9371 0.3028 1.3084 12 7 4.0651 -1.3508 0.0175 13 6 5.4170 -0.8782 -0.3096 14 6 5.8955 -1.5527 -1.5968 15 6 7.3038 -1.0609 -1.9371 16 6 7.7753 -1.7257 -3.2047 17 1 7.1344 -2.4283 -3.7166 18 6 9.0245 -1.4362 -3.7115 19 7 9.8047 -0.5803 -3.0884 20 14 9.6087 -2.2597 -5.2831 21 1 8.6834 -1.9195 -6.3937 22 1 10.9757 -1.7825 -5.6133 23 1 9.6317 -3.7321 -5.0914 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 0.4475 -2.1730 1.2890 32 1 1.8679 -2.6655 0.3357 33 1 3.8452 -3.4369 1.5186 34 1 3.8052 -3.4828 3.2976 35 1 3.7462 -1.0182 3.3795 36 1 5.1584 -1.5657 2.4424 37 1 4.0414 -2.3570 0.0900 38 1 5.3998 0.2025 -0.4507 39 1 6.0962 -1.1274 0.5058 40 1 5.9126 -2.6335 -1.4560 41 1 5.2162 -1.3032 -2.4120 42 1 7.2871 0.0198 -2.0778 43 1 7.9828 -1.3108 -1.1219 44 1 10.6837 -0.3768 -3.4447 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924940880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:34 Heat of formation + Delta-G solvation = -98.202978 kcal Electronic energy + Delta-G solvation = -19906.888320 eV Core-core repulsion = 17049.985475 eV Total energy + Delta-G solvation = -2856.902845 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13251 -37.53446 -36.80023 -35.43156 -33.64069 -31.38763 -30.65695 -28.34330 -27.65303 -25.30603 -24.75650 -24.20922 -21.93400 -21.26068 -20.06592 -18.51579 -17.56299 -17.13602 -16.59946 -16.56970 -15.98477 -15.62547 -15.51947 -15.04959 -14.74517 -14.37089 -14.22997 -13.82188 -13.53897 -13.33924 -13.23072 -13.00443 -12.92402 -12.70743 -12.48245 -12.43283 -12.29683 -12.10142 -11.99692 -11.57759 -11.42475 -11.39084 -11.27912 -11.18263 -10.91954 -10.55119 -10.28410 -9.29534 -8.20275 -6.31365 1.39787 1.42837 1.50797 2.40822 2.94939 3.12910 3.20664 3.71517 3.83024 3.94551 3.98135 4.19526 4.22323 4.29200 4.34088 4.41441 4.52111 4.55327 4.69467 4.76984 4.79191 4.82239 4.87274 4.93426 5.00982 5.01774 5.04227 5.11419 5.14761 5.17313 5.21417 5.26147 5.39977 5.51420 5.56152 5.69679 5.75151 5.85705 6.08089 6.25901 6.27331 6.46017 6.85442 7.37980 8.91399 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026541 B = 0.004140 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.737307 B = 6761.603255 C = 7177.265191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.142 4.142 4 C -0.094 4.094 5 H 0.080 0.920 6 C 0.062 3.938 7 O -0.397 6.397 8 C 0.059 3.941 9 C -0.184 4.184 10 C 0.085 3.915 11 H 0.077 0.923 12 N -0.676 5.676 13 C 0.075 3.925 14 C -0.091 4.091 15 C 0.026 3.974 16 C -0.544 4.544 17 H 0.059 0.941 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.267 1.267 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.338 0.662 38 H 0.059 0.941 39 H 0.022 0.978 40 H 0.048 0.952 41 H 0.052 0.948 42 H -0.010 1.010 43 H -0.010 1.010 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.004 -0.828 10.807 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 C -0.200 4.200 4 C -0.113 4.113 5 H 0.098 0.902 6 C -0.014 4.014 7 O -0.316 6.316 8 C -0.018 4.018 9 C -0.223 4.223 10 C -0.025 4.025 11 H 0.095 0.905 12 N -0.307 5.307 13 C -0.054 4.054 14 C -0.129 4.129 15 C -0.011 4.011 16 C -0.582 4.582 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.789 3.211 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.192 1.192 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.078 0.922 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.009 0.991 43 H 0.008 0.992 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.273 -0.371 10.522 21.089 hybrid contribution 1.650 -0.413 -0.303 1.727 sum -16.623 -0.784 10.219 19.529 Atomic orbital electron populations 1.21905 0.94576 1.02025 1.01945 1.20894 0.95495 0.95687 0.97684 1.21794 1.00492 0.96206 1.01468 1.21726 0.93692 0.96771 0.99096 0.90161 1.22800 0.99435 0.91045 0.88142 1.87904 1.20725 1.76894 1.46038 1.22604 0.80839 0.95873 1.02475 1.22805 1.01154 0.97888 1.00453 1.21703 0.95383 0.98273 0.87134 0.90509 1.60632 1.23479 1.11797 1.34830 1.21813 0.88336 0.99285 0.95934 1.21354 0.96276 0.98846 0.96392 1.18954 0.92402 0.94856 0.94924 1.21669 1.01086 1.25491 1.09932 0.92308 1.25975 0.96985 0.95788 1.01012 1.70091 1.10101 1.35653 1.41567 0.85515 0.77337 0.79009 0.79277 1.19205 1.20782 1.19151 0.92281 0.92641 0.92086 0.91152 0.92413 0.93904 0.92958 0.87623 0.93016 0.93406 0.87648 0.89956 0.91343 0.84216 0.92206 0.96010 0.93356 0.92937 0.99146 0.99186 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.85 71.98 0.64 -1.70 16 2 C -0.08 -1.56 2.32 -10.79 -0.03 -1.59 16 3 C -0.14 -2.93 8.84 71.98 0.64 -2.29 16 4 C -0.09 -1.84 1.80 -10.70 -0.02 -1.86 16 5 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 6 C 0.06 1.22 5.47 72.01 0.39 1.62 16 7 O -0.40 -8.89 10.77 -148.98 -1.60 -10.49 16 8 C 0.06 1.20 6.58 72.01 0.47 1.67 16 9 C -0.18 -3.83 5.72 30.68 0.18 -3.65 16 10 C 0.09 1.93 1.90 45.03 0.09 2.02 16 11 H 0.08 1.87 6.29 -2.39 -0.01 1.85 16 12 N -0.68 -18.09 5.00 -490.94 -2.45 -20.54 16 13 C 0.08 2.53 5.49 86.30 0.47 3.00 16 14 C -0.09 -3.74 5.41 30.59 0.17 -3.57 16 15 C 0.03 1.40 4.97 29.85 0.15 1.55 16 16 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 18 C 0.00 0.00 5.46 84.65 0.46 0.47 16 19 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 20 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.88 6.50 -2.39 -0.02 0.86 16 27 H 0.07 1.69 7.54 -2.39 -0.02 1.67 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 1.02 6.51 -2.39 -0.02 1.00 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 1.76 6.58 -2.39 -0.02 1.75 16 32 H 0.05 1.09 7.37 -2.39 -0.02 1.07 16 33 H 0.05 1.00 6.43 -2.39 -0.02 0.98 16 34 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.52 7.40 -2.39 -0.02 1.50 16 37 H 0.34 8.79 5.82 -89.69 -0.52 8.26 16 38 H 0.06 2.09 8.06 -2.39 -0.02 2.07 16 39 H 0.02 0.74 7.40 -2.39 -0.02 0.72 16 40 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -62.91 333.34 2.52 -60.39 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.42 Total: 16.61 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 3.84 Total: -35.49 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -2.17 Total: -77.62 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -1.60 Total: -10.49 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -62.91 2.52 -60.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.812 kcal (2) G-P(sol) polarization free energy of solvation -62.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds