Wall clock time and date at job start Mon Mar 30 2020 06:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47343 * 2 1 4 4 C 1.52997 * 109.46948 * 120.00352 * 2 1 3 5 5 H 1.09006 * 109.57272 * 184.43691 * 4 2 1 6 6 C 1.53106 * 109.59979 * 304.55614 * 4 2 1 7 7 O 1.42905 * 109.48959 * 177.42744 * 6 4 2 8 8 C 1.42906 * 114.09430 * 298.88447 * 7 6 4 9 9 C 1.53095 * 109.41323 * 61.15918 * 8 7 6 10 10 C 1.53176 * 109.52479 * 64.28166 * 4 2 1 11 11 H 1.08997 * 109.54088 * 303.06630 * 10 4 2 12 12 N 1.46899 * 109.54574 * 63.24823 * 10 4 2 13 13 C 1.46903 * 110.99733 * 204.82522 * 12 10 4 14 14 C 1.53001 * 109.46935 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47380 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47445 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99787 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00270 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99625 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46790 * 269.99983 * 20 18 16 22 22 H 1.48498 * 109.47226 * 29.99913 * 20 18 16 23 23 H 1.48499 * 109.47344 * 150.00036 * 20 18 16 24 24 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47035 * 299.99934 * 1 2 3 26 26 H 1.09000 * 109.47276 * 59.99601 * 1 2 3 27 27 H 1.09001 * 109.46703 * 239.99782 * 2 1 3 28 28 H 1.08996 * 109.47267 * 174.40275 * 3 2 1 29 29 H 1.08995 * 109.47128 * 294.40902 * 3 2 1 30 30 H 1.09008 * 109.46764 * 54.40751 * 3 2 1 31 31 H 1.09003 * 109.40604 * 57.43957 * 6 4 2 32 32 H 1.09001 * 109.49008 * 297.45792 * 6 4 2 33 33 H 1.08996 * 109.48387 * 301.17954 * 8 7 6 34 34 H 1.08995 * 109.48515 * 181.14323 * 8 7 6 35 35 H 1.09000 * 109.52452 * 182.48244 * 9 8 7 36 36 H 1.09000 * 109.52009 * 62.29382 * 9 8 7 37 37 H 1.00897 * 111.00099 * 80.86725 * 12 10 4 38 38 H 1.08999 * 109.47080 * 59.99465 * 13 12 10 39 39 H 1.08996 * 109.47398 * 299.99492 * 13 12 10 40 40 H 1.09001 * 109.47133 * 59.99540 * 14 13 12 41 41 H 1.09004 * 109.46817 * 299.99842 * 14 13 12 42 42 H 1.08999 * 109.46719 * 59.99690 * 15 14 13 43 43 H 1.08997 * 109.46839 * 300.00594 * 15 14 13 44 44 H 0.96998 * 119.99691 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1271 -0.6540 1.2915 6 6 1.4398 -0.0711 2.4987 7 8 1.8700 -0.7837 3.6603 8 6 1.4634 -2.1534 3.6884 9 6 2.0663 -2.8878 2.4880 10 6 1.6199 -2.1935 1.1976 11 1 0.5361 -2.2603 1.1038 12 7 2.2543 -2.8454 0.0441 13 6 1.4765 -4.0119 -0.3947 14 6 2.1665 -4.6625 -1.5953 15 6 1.3570 -5.8778 -2.0520 16 6 2.0362 -6.5183 -3.2349 17 1 2.9538 -6.1005 -3.6220 18 6 1.4868 -7.6381 -3.8223 19 7 0.3696 -8.1471 -3.3505 20 14 2.3291 -8.4324 -5.2882 21 1 1.8147 -7.8267 -6.5427 22 1 3.7947 -8.2115 -5.1965 23 1 2.0475 -9.8905 -5.2908 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 3.1254 1.4441 0.1002 29 1 1.7608 1.9265 -0.9358 30 1 1.5972 1.9844 0.8357 31 1 0.3520 -0.1013 2.4357 32 1 1.7715 0.9651 2.5644 33 1 0.3760 -2.2109 3.6409 34 1 1.8121 -2.6173 4.6109 35 1 1.7218 -3.9220 2.4831 36 1 3.1539 -2.8656 2.5561 37 1 3.2068 -3.1038 0.2535 38 1 0.4741 -3.6935 -0.6806 39 1 1.4102 -4.7320 0.4208 40 1 3.1692 -4.9807 -1.3097 41 1 2.2325 -3.9421 -2.4107 42 1 0.3542 -5.5599 -2.3374 43 1 1.2913 -6.5979 -1.2364 44 1 -0.0171 -8.9347 -3.7640 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924940884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:37 Heat of formation + Delta-G solvation = -82.166544 kcal Electronic energy + Delta-G solvation = -19705.756769 eV Core-core repulsion = 16849.549316 eV Total energy + Delta-G solvation = -2856.207453 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.09758 -36.64743 -35.74445 -33.69934 -32.00853 -30.21187 -29.37407 -27.29224 -26.22087 -24.40430 -23.64076 -22.13840 -21.07212 -20.17884 -19.06303 -16.51029 -16.33053 -16.27149 -15.31621 -15.02598 -14.66179 -14.45049 -14.32393 -14.04504 -13.67166 -13.36250 -12.93616 -12.77494 -12.36749 -12.17883 -12.00074 -11.68469 -11.57913 -11.48837 -11.15847 -10.93868 -10.85431 -10.69372 -10.57354 -10.54002 -10.43260 -10.17526 -9.70724 -9.60084 -9.27724 -9.03519 -8.33709 -8.10034 -5.98972 -4.00969 3.32800 3.38805 3.42464 3.74412 4.29302 4.48381 4.57217 4.69860 4.79412 4.96873 5.00662 5.14008 5.17846 5.25534 5.36938 5.39569 5.47234 5.53803 5.58995 5.63886 5.71700 5.79885 5.81290 5.84859 5.90005 5.95549 6.00648 6.11165 6.20048 6.32567 6.38282 6.49541 6.72795 6.78878 7.06922 7.14281 7.35673 7.63453 7.69335 7.84240 8.01503 8.44939 9.06281 9.63049 11.12520 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030268 B = 0.003832 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.842095 B = 7304.721151 C = 7805.816093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C -0.149 4.149 4 C -0.102 4.102 5 H 0.076 0.924 6 C 0.061 3.939 7 O -0.386 6.386 8 C 0.065 3.935 9 C -0.187 4.187 10 C 0.088 3.912 11 H 0.079 0.921 12 N -0.681 5.681 13 C 0.060 3.940 14 C -0.106 4.106 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.274 1.274 23 H -0.287 1.287 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.338 0.662 38 H 0.065 0.935 39 H 0.023 0.977 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.282 16.652 12.351 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 C -0.206 4.206 4 C -0.122 4.122 5 H 0.095 0.905 6 C -0.016 4.016 7 O -0.305 6.305 8 C -0.012 4.012 9 C -0.227 4.227 10 C -0.022 4.022 11 H 0.097 0.903 12 N -0.310 5.310 13 C -0.068 4.068 14 C -0.144 4.144 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.199 1.199 23 H -0.213 1.213 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.155 0.845 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.976 17.008 11.988 20.831 hybrid contribution 0.419 -1.432 -0.336 1.529 sum 1.395 15.576 11.651 19.502 Atomic orbital electron populations 1.21949 0.95835 1.01881 1.01146 1.20977 0.95342 0.95138 0.98762 1.21906 1.00916 0.96486 1.01324 1.21779 1.01107 0.94468 0.94816 0.90539 1.22832 0.98450 0.95864 0.84487 1.87907 1.78012 1.22578 1.41956 1.22498 0.98280 0.82078 0.98364 1.22977 1.02124 1.00695 0.96891 1.21679 0.99272 0.93237 0.88053 0.90280 1.60622 1.05781 1.30075 1.34498 1.22137 0.97579 0.89679 0.97434 1.21616 0.98854 0.98615 0.95360 1.19059 0.95175 0.91369 0.95938 1.21258 1.08976 1.11288 1.14161 0.92694 1.25028 0.95028 0.97097 0.97348 1.69968 1.19425 1.22960 1.41294 0.86598 0.79914 0.78467 0.83055 1.20649 1.19881 1.21259 0.92391 0.93126 0.92846 0.89007 0.92781 0.92820 0.93144 0.92877 0.88916 0.93286 0.89136 0.90773 0.90967 0.84462 0.91663 0.95878 0.93726 0.92591 0.96648 0.96880 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.47 37.16 0.31 -1.22 16 2 C -0.08 -0.88 2.63 -90.62 -0.24 -1.12 16 3 C -0.15 -1.33 8.80 37.16 0.33 -1.01 16 4 C -0.10 -1.10 1.86 -90.48 -0.17 -1.27 16 5 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 6 C 0.06 0.61 5.42 37.21 0.20 0.81 16 7 O -0.39 -4.50 10.77 -35.23 -0.38 -4.88 16 8 C 0.07 0.67 6.84 37.21 0.25 0.92 16 9 C -0.19 -2.08 5.40 -26.59 -0.14 -2.23 16 10 C 0.09 1.05 1.77 -67.53 -0.12 0.93 16 11 H 0.08 1.00 6.08 -51.93 -0.32 0.68 16 12 N -0.68 -9.51 5.57 -106.53 -0.59 -10.10 16 13 C 0.06 1.02 5.49 -3.82 -0.02 1.00 16 14 C -0.11 -2.20 5.41 -26.73 -0.14 -2.34 16 15 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 16 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H 0.06 0.66 6.48 -51.93 -0.34 0.32 16 25 H 0.05 0.45 6.30 -51.93 -0.33 0.12 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.09 1.17 7.59 -51.93 -0.39 0.77 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.40 6.90 -51.92 -0.36 0.04 16 31 H 0.05 0.51 6.21 -51.93 -0.32 0.19 16 32 H 0.09 0.83 6.82 -51.93 -0.35 0.48 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.86 7.56 -51.93 -0.39 0.46 16 36 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 37 H 0.34 4.58 8.44 -39.29 -0.33 4.25 16 38 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 39 H 0.02 0.39 7.52 -51.93 -0.39 0.00 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 335.65 15.07 5.06 5.06 Total: -1.00 -29.84 335.65 -8.62 -38.46 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.13 Total: -0.16 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -0.29 Total: -18.74 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.14 Total: -36.56 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.38 Total: -4.88 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.84 -8.62 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.703 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds