Wall clock time and date at job start Mon Mar 30 2020 06:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47343 * 2 1 4 4 C 1.52997 * 109.46948 * 120.00352 * 2 1 3 5 5 H 1.09006 * 109.57272 * 184.43691 * 4 2 1 6 6 C 1.53106 * 109.59979 * 304.55614 * 4 2 1 7 7 O 1.42905 * 109.48959 * 177.42744 * 6 4 2 8 8 C 1.42906 * 114.09430 * 298.88447 * 7 6 4 9 9 C 1.53095 * 109.41323 * 61.15918 * 8 7 6 10 10 C 1.53176 * 109.52479 * 64.28166 * 4 2 1 11 11 H 1.08997 * 109.54088 * 303.06630 * 10 4 2 12 12 N 1.46899 * 109.54574 * 63.24823 * 10 4 2 13 13 C 1.46903 * 110.99733 * 204.82522 * 12 10 4 14 14 C 1.53001 * 109.46935 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47380 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47445 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99787 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00270 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99625 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46790 * 269.99983 * 20 18 16 22 22 H 1.48498 * 109.47226 * 29.99913 * 20 18 16 23 23 H 1.48499 * 109.47344 * 150.00036 * 20 18 16 24 24 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47035 * 299.99934 * 1 2 3 26 26 H 1.09000 * 109.47276 * 59.99601 * 1 2 3 27 27 H 1.09001 * 109.46703 * 239.99782 * 2 1 3 28 28 H 1.08996 * 109.47267 * 174.40275 * 3 2 1 29 29 H 1.08995 * 109.47128 * 294.40902 * 3 2 1 30 30 H 1.09008 * 109.46764 * 54.40751 * 3 2 1 31 31 H 1.09003 * 109.40604 * 57.43957 * 6 4 2 32 32 H 1.09001 * 109.49008 * 297.45792 * 6 4 2 33 33 H 1.08996 * 109.48387 * 301.17954 * 8 7 6 34 34 H 1.08995 * 109.48515 * 181.14323 * 8 7 6 35 35 H 1.09000 * 109.52452 * 182.48244 * 9 8 7 36 36 H 1.09000 * 109.52009 * 62.29382 * 9 8 7 37 37 H 1.00897 * 111.00099 * 80.86725 * 12 10 4 38 38 H 1.08999 * 109.47080 * 59.99465 * 13 12 10 39 39 H 1.08996 * 109.47398 * 299.99492 * 13 12 10 40 40 H 1.09001 * 109.47133 * 59.99540 * 14 13 12 41 41 H 1.09004 * 109.46817 * 299.99842 * 14 13 12 42 42 H 1.08999 * 109.46719 * 59.99690 * 15 14 13 43 43 H 1.08997 * 109.46839 * 300.00594 * 15 14 13 44 44 H 0.96998 * 119.99691 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1271 -0.6540 1.2915 6 6 1.4398 -0.0711 2.4987 7 8 1.8700 -0.7837 3.6603 8 6 1.4634 -2.1534 3.6884 9 6 2.0663 -2.8878 2.4880 10 6 1.6199 -2.1935 1.1976 11 1 0.5361 -2.2603 1.1038 12 7 2.2543 -2.8454 0.0441 13 6 1.4765 -4.0119 -0.3947 14 6 2.1665 -4.6625 -1.5953 15 6 1.3570 -5.8778 -2.0520 16 6 2.0362 -6.5183 -3.2349 17 1 2.9538 -6.1005 -3.6220 18 6 1.4868 -7.6381 -3.8223 19 7 0.3696 -8.1471 -3.3505 20 14 2.3291 -8.4324 -5.2882 21 1 1.8147 -7.8267 -6.5427 22 1 3.7947 -8.2115 -5.1965 23 1 2.0475 -9.8905 -5.2908 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 3.1254 1.4441 0.1002 29 1 1.7608 1.9265 -0.9358 30 1 1.5972 1.9844 0.8357 31 1 0.3520 -0.1013 2.4357 32 1 1.7715 0.9651 2.5644 33 1 0.3760 -2.2109 3.6409 34 1 1.8121 -2.6173 4.6109 35 1 1.7218 -3.9220 2.4831 36 1 3.1539 -2.8656 2.5561 37 1 3.2068 -3.1038 0.2535 38 1 0.4741 -3.6935 -0.6806 39 1 1.4102 -4.7320 0.4208 40 1 3.1692 -4.9807 -1.3097 41 1 2.2325 -3.9421 -2.4107 42 1 0.3542 -5.5599 -2.3374 43 1 1.2913 -6.5979 -1.2364 44 1 -0.0171 -8.9347 -3.7640 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924940884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:36 Heat of formation + Delta-G solvation = -100.377256 kcal Electronic energy + Delta-G solvation = -19706.546445 eV Core-core repulsion = 16849.549316 eV Total energy + Delta-G solvation = -2856.997129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.99789 -37.75358 -36.81668 -35.49743 -33.67009 -31.49791 -30.39940 -28.08452 -27.93287 -25.47678 -24.79445 -23.62882 -22.19017 -21.70125 -19.99604 -18.48981 -17.35028 -17.21200 -16.64122 -16.43302 -16.03770 -15.64825 -15.31572 -15.14711 -14.79539 -14.49197 -14.19517 -14.00795 -13.55924 -13.46120 -13.40142 -13.01034 -12.80637 -12.71644 -12.47662 -12.38878 -12.28462 -12.02757 -11.79131 -11.59692 -11.52991 -11.41552 -11.30132 -11.20279 -10.94777 -10.56191 -10.39189 -9.26394 -8.21056 -6.32106 1.39528 1.40940 1.52132 2.40386 2.93455 3.12165 3.18947 3.66805 3.82237 3.94219 4.06885 4.19027 4.22335 4.28447 4.37274 4.39338 4.45371 4.54309 4.60961 4.69403 4.74546 4.84284 4.85630 4.88736 4.97536 4.99182 5.08316 5.09905 5.11632 5.17114 5.22155 5.25572 5.40460 5.50899 5.56340 5.64193 5.74224 5.84988 6.09209 6.25652 6.26992 6.48073 6.84809 7.37279 8.90915 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030268 B = 0.003832 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.842095 B = 7304.721151 C = 7805.816093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.145 4.145 4 C -0.095 4.095 5 H 0.071 0.929 6 C 0.061 3.939 7 O -0.399 6.399 8 C 0.065 3.935 9 C -0.183 4.183 10 C 0.088 3.912 11 H 0.073 0.927 12 N -0.678 5.678 13 C 0.076 3.924 14 C -0.091 4.091 15 C 0.026 3.974 16 C -0.543 4.543 17 H 0.059 0.941 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.263 1.263 23 H -0.281 1.281 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.342 0.658 38 H 0.058 0.942 39 H 0.022 0.978 40 H 0.049 0.951 41 H 0.051 0.949 42 H -0.010 1.010 43 H -0.010 1.010 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 17.701 12.611 21.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 C -0.203 4.203 4 C -0.114 4.114 5 H 0.089 0.911 6 C -0.015 4.015 7 O -0.318 6.318 8 C -0.012 4.012 9 C -0.223 4.223 10 C -0.022 4.022 11 H 0.091 0.909 12 N -0.308 5.308 13 C -0.053 4.053 14 C -0.129 4.129 15 C -0.012 4.012 16 C -0.581 4.581 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.789 3.211 21 H -0.197 1.197 22 H -0.188 1.188 23 H -0.206 1.206 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.160 0.840 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.768 18.077 12.258 21.912 hybrid contribution 0.150 -1.747 -0.395 1.798 sum 1.918 16.329 11.863 20.274 Atomic orbital electron populations 1.21932 0.95552 1.01102 1.02036 1.20911 0.95540 0.96012 0.97537 1.21869 1.01002 0.95292 1.02088 1.21706 1.00764 0.93439 0.95502 0.91095 1.22910 0.98803 0.96322 0.83477 1.87897 1.78307 1.23079 1.42481 1.22575 0.98667 0.81571 0.98415 1.22917 1.02101 1.00388 0.96862 1.21726 0.98784 0.94075 0.87618 0.90890 1.60544 1.05757 1.28435 1.36024 1.21799 0.97091 0.90499 0.95889 1.21360 0.98407 0.96466 0.96691 1.18962 0.94625 0.92883 0.94728 1.21697 1.09386 1.11929 1.15134 0.92318 1.25985 0.95645 0.97685 1.00499 1.70097 1.20917 1.23517 1.42891 0.85445 0.79139 0.77415 0.79050 1.19743 1.18753 1.20643 0.93979 0.91511 0.92700 0.91466 0.92711 0.92619 0.91701 0.92207 0.87436 0.92624 0.87733 0.91343 0.91023 0.83974 0.92367 0.96022 0.93258 0.92989 0.99138 0.99143 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.47 71.98 0.61 -2.26 16 2 C -0.08 -1.62 2.63 -10.80 -0.03 -1.65 16 3 C -0.15 -2.33 8.80 71.98 0.63 -1.69 16 4 C -0.09 -1.90 1.86 -10.70 -0.02 -1.92 16 5 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 6 C 0.06 1.10 5.42 72.02 0.39 1.49 16 7 O -0.40 -8.45 10.77 -148.98 -1.60 -10.06 16 8 C 0.06 1.22 6.84 72.01 0.49 1.71 16 9 C -0.18 -3.87 5.40 30.69 0.17 -3.71 16 10 C 0.09 2.03 1.77 45.03 0.08 2.11 16 11 H 0.07 1.81 6.08 -2.39 -0.01 1.79 16 12 N -0.68 -18.70 5.57 -490.95 -2.74 -21.43 16 13 C 0.08 2.61 5.49 86.30 0.47 3.08 16 14 C -0.09 -3.81 5.41 30.59 0.17 -3.65 16 15 C 0.03 1.38 4.97 29.85 0.15 1.53 16 16 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 19 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 20 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H 0.04 0.94 6.48 -2.39 -0.02 0.92 16 25 H 0.07 1.05 6.30 -2.39 -0.02 1.04 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.69 7.59 -2.39 -0.02 1.67 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.85 6.90 -2.38 -0.02 0.84 16 31 H 0.06 1.00 6.21 -2.39 -0.01 0.99 16 32 H 0.11 1.62 6.82 -2.39 -0.02 1.60 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.53 7.56 -2.39 -0.02 1.51 16 36 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 37 H 0.34 9.02 8.44 -89.70 -0.76 8.27 16 38 H 0.06 2.07 8.06 -2.39 -0.02 2.05 16 39 H 0.02 0.74 7.52 -2.39 -0.02 0.73 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 44 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -63.75 335.65 1.97 -61.78 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.19 Total: 15.98 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 3.81 Total: -35.83 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -2.45 Total: -78.63 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -1.60 Total: -10.06 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -63.75 1.97 -61.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.595 kcal (2) G-P(sol) polarization free energy of solvation -63.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds