Wall clock time and date at job start Mon Mar 30 2020 06:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46939 * 2 1 4 4 C 1.53005 * 109.46914 * 119.99495 * 2 1 3 5 5 H 1.08994 * 109.56908 * 54.79728 * 4 2 1 6 6 C 1.53105 * 109.59727 * 294.67762 * 4 2 1 7 7 O 1.42907 * 109.48458 * 182.57602 * 6 4 2 8 8 C 1.42901 * 114.09540 * 61.11606 * 7 6 4 9 9 C 1.53090 * 109.41243 * 298.83736 * 8 7 6 10 10 C 1.53173 * 109.16500 * 57.61262 * 9 8 7 11 11 H 1.09005 * 109.54508 * 62.97494 * 10 9 8 12 12 N 1.46898 * 109.54864 * 183.14747 * 10 9 8 13 13 C 1.46905 * 111.00408 * 273.51796 * 12 10 9 14 14 C 1.52998 * 109.47076 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47032 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47276 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00033 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00235 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99874 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99919 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47435 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47298 * 239.99829 * 20 18 16 23 23 H 1.48509 * 109.46623 * 120.00441 * 20 18 16 24 24 H 1.09004 * 109.47478 * 305.71461 * 1 2 3 25 25 H 1.09001 * 109.46849 * 65.71398 * 1 2 3 26 26 H 1.08997 * 109.47012 * 185.70641 * 1 2 3 27 27 H 1.09001 * 109.47498 * 239.99591 * 2 1 3 28 28 H 1.09002 * 109.47150 * 299.99104 * 3 2 1 29 29 H 1.08997 * 109.47218 * 59.99992 * 3 2 1 30 30 H 1.09003 * 109.46815 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47844 * 62.55183 * 6 4 2 32 32 H 1.09002 * 109.41734 * 302.56479 * 6 4 2 33 33 H 1.08999 * 109.47846 * 178.86095 * 8 7 6 34 34 H 1.08992 * 109.49532 * 58.82946 * 8 7 6 35 35 H 1.08998 * 109.52524 * 297.70523 * 9 8 7 36 36 H 1.09006 * 109.57278 * 177.54536 * 9 8 7 37 37 H 1.00894 * 111.00322 * 149.55564 * 12 10 9 38 38 H 1.08994 * 109.46828 * 59.99634 * 13 12 10 39 39 H 1.08995 * 109.46600 * 299.99287 * 13 12 10 40 40 H 1.08994 * 109.47285 * 59.99418 * 14 13 12 41 41 H 1.09001 * 109.47105 * 299.99630 * 14 13 12 42 42 H 1.08999 * 109.47034 * 59.99496 * 15 14 13 43 43 H 1.09001 * 109.46973 * 299.99832 * 15 14 13 44 44 H 0.97002 * 120.00215 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6034 -1.7187 1.2988 6 6 1.6433 0.0715 2.4977 7 8 2.1720 -0.5721 3.6590 8 6 3.5981 -0.6608 3.6785 9 6 4.0732 -1.4847 2.4789 10 6 3.5664 -0.8328 1.1888 11 1 4.0010 0.1617 1.0876 12 7 3.9535 -1.6575 0.0364 13 6 5.3015 -1.3086 -0.4318 14 6 5.6687 -2.1869 -1.6295 15 6 7.0724 -1.8231 -2.1175 16 6 7.4343 -2.6886 -3.2968 17 1 6.7333 -3.4250 -3.6616 18 6 8.6602 -2.5406 -3.9102 19 7 9.5138 -1.6443 -3.4658 20 14 9.1090 -3.6140 -5.3716 21 1 7.9846 -4.5361 -5.6724 22 1 10.3251 -4.4036 -5.0509 23 1 9.3741 -2.7550 -6.5537 24 1 -0.3634 0.5999 0.8344 25 1 -0.3633 0.4227 -0.9367 26 1 -0.3633 -1.0226 0.1022 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 0.0005 31 1 0.5567 0.1162 2.5699 32 1 2.0449 1.0825 2.4278 33 1 3.9197 -1.1436 4.6013 34 1 4.0256 0.3404 3.6241 35 1 3.6790 -2.4982 2.5540 36 1 5.1627 -1.5175 2.4668 37 1 3.2791 -1.5757 -0.7096 38 1 6.0190 -1.4725 0.3721 39 1 5.3226 -0.2603 -0.7295 40 1 4.9511 -2.0235 -2.4335 41 1 5.6476 -3.2352 -1.3314 42 1 7.7901 -1.9862 -1.3136 43 1 7.0930 -0.7749 -2.4158 44 1 9.2809 -1.0872 -2.7067 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924940886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:39 Heat of formation + Delta-G solvation = -103.743721 kcal Electronic energy + Delta-G solvation = -19756.006275 eV Core-core repulsion = 16898.863165 eV Total energy + Delta-G solvation = -2857.143110 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12592 -37.95071 -36.93579 -35.70195 -33.66351 -31.57564 -30.45386 -28.19285 -27.69541 -25.52620 -24.93455 -23.80849 -22.24260 -21.82894 -20.01482 -18.93258 -17.72706 -17.09272 -16.74912 -16.21646 -15.86263 -15.66858 -15.63270 -15.26787 -15.01948 -14.52860 -14.49971 -13.93736 -13.83436 -13.66238 -13.42719 -12.97383 -12.90126 -12.65817 -12.48842 -12.32391 -12.10353 -12.02765 -11.94154 -11.78764 -11.71264 -11.63564 -11.26613 -11.10767 -10.69582 -10.56821 -10.42133 -9.45139 -8.71747 -6.42001 1.51116 1.60967 1.77891 2.54730 2.88308 3.07412 3.13574 3.59230 3.68643 3.75594 4.05630 4.07365 4.13244 4.22085 4.22377 4.24538 4.35499 4.44105 4.53098 4.56509 4.65345 4.74666 4.75790 4.77810 4.82800 4.89628 4.94823 4.95482 5.00109 5.02810 5.10624 5.23530 5.25285 5.36381 5.39544 5.42170 5.49580 5.94389 6.05679 6.16380 6.21469 6.39683 6.55956 7.40171 8.69245 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030257 B = 0.003852 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.173524 B = 7267.776235 C = 7769.739488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.153 4.153 4 C -0.111 4.111 5 H 0.078 0.922 6 C 0.065 3.935 7 O -0.398 6.398 8 C 0.063 3.937 9 C -0.144 4.144 10 C 0.087 3.913 11 H 0.044 0.956 12 N -0.686 5.686 13 C 0.075 3.925 14 C -0.086 4.086 15 C 0.010 3.990 16 C -0.620 4.620 17 H 0.049 0.951 18 C -0.040 4.040 19 N -0.938 5.938 20 Si 1.124 2.876 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.343 0.657 38 H 0.060 0.940 39 H 0.021 0.979 40 H 0.049 0.951 41 H 0.051 0.949 42 H -0.012 1.012 43 H -0.012 1.012 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.759 5.255 11.930 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.211 4.211 4 C -0.130 4.130 5 H 0.097 0.903 6 C -0.012 4.012 7 O -0.316 6.316 8 C -0.014 4.014 9 C -0.182 4.182 10 C -0.022 4.022 11 H 0.061 0.939 12 N -0.319 5.319 13 C -0.054 4.054 14 C -0.124 4.124 15 C -0.028 4.028 16 C -0.657 4.657 17 H 0.068 0.932 18 C -0.237 4.237 19 N -0.576 5.576 20 Si 0.945 3.055 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.202 1.202 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.164 0.836 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.006 0.994 43 H 0.006 0.994 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.489 4.351 11.374 21.311 hybrid contribution -0.658 1.296 0.397 1.507 sum -18.147 5.647 11.771 22.355 Atomic orbital electron populations 1.21839 0.93323 1.02348 1.02599 1.21105 0.97288 0.96125 0.96645 1.21985 1.00261 0.95978 1.02828 1.21938 0.93950 1.00758 0.96355 0.90339 1.22858 1.00153 0.94896 0.83254 1.87900 1.21223 1.80407 1.42109 1.22654 0.80707 0.99419 0.98589 1.22207 1.01045 1.00572 0.94380 1.21652 0.95247 0.94290 0.91017 0.93859 1.60528 1.03234 1.57551 1.10570 1.21834 0.90799 0.96154 0.96587 1.21255 0.96199 0.99060 0.95872 1.19141 0.93726 0.94945 0.94992 1.22548 1.04124 1.22217 1.16850 0.93242 1.27494 0.93189 0.98648 1.04367 1.70862 1.38161 1.22170 1.26395 0.82858 0.76221 0.74284 0.72172 1.19475 1.20285 1.20225 0.91354 0.92092 0.92366 0.92004 0.92012 0.90965 0.94174 0.87132 0.92096 0.87414 0.92583 0.91408 0.91700 0.83585 0.92152 0.96054 0.93255 0.93033 0.99358 0.99372 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.81 71.98 0.63 -1.32 16 2 C -0.09 -1.61 2.59 -10.79 -0.03 -1.63 16 3 C -0.15 -2.59 8.46 71.98 0.61 -1.98 16 4 C -0.11 -2.15 1.78 -10.70 -0.02 -2.17 16 5 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 6 C 0.07 1.13 5.42 72.02 0.39 1.52 16 7 O -0.40 -8.49 10.77 -148.98 -1.60 -10.10 16 8 C 0.06 1.23 6.84 72.01 0.49 1.72 16 9 C -0.14 -3.36 5.65 30.68 0.17 -3.19 16 10 C 0.09 2.09 1.84 45.03 0.08 2.18 16 11 H 0.04 1.08 6.08 -2.38 -0.01 1.07 16 12 N -0.69 -19.84 6.32 -490.97 -3.10 -22.94 16 13 C 0.08 2.64 5.49 86.30 0.47 3.12 16 14 C -0.09 -3.68 5.41 30.59 0.17 -3.51 16 15 C 0.01 0.51 4.28 29.85 0.13 0.64 16 16 C -0.62 -36.58 9.11 25.60 0.23 -36.35 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 18 C -0.04 -2.37 5.46 84.66 0.46 -1.91 16 19 N -0.94 -59.39 13.65 21.45 0.29 -59.10 16 20 Si 1.12 51.34 29.90 68.60 2.05 53.39 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H 0.07 0.76 6.93 -2.39 -0.02 0.74 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 1.24 6.21 -2.39 -0.01 1.22 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.00 6.29 -2.39 -0.02 0.99 16 30 H 0.04 0.81 6.51 -2.39 -0.02 0.79 16 31 H 0.11 1.55 6.85 -2.39 -0.02 1.53 16 32 H 0.06 0.97 6.20 -2.39 -0.01 0.95 16 33 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 1.61 7.64 -2.38 -0.02 1.59 16 37 H 0.34 9.39 6.31 -89.70 -0.57 8.83 16 38 H 0.06 2.18 7.61 -2.39 -0.02 2.16 16 39 H 0.02 0.75 8.06 -2.39 -0.02 0.73 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 42 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 43 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 44 H 0.26 16.35 7.22 -92.71 -0.67 15.68 16 Total: -1.00 -66.50 332.06 1.92 -64.58 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.49 Total: 17.06 kcal Atomic # 6 Polarization: -46.69 SS G_CDS: 3.80 Total: -42.89 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -2.81 Total: -82.04 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -1.60 Total: -10.10 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Total: -66.50 1.92 -64.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.161 kcal (2) G-P(sol) polarization free energy of solvation -66.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds