Wall clock time and date at job start Mon Mar 30 2020 06:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 C 1.53004 * 109.46896 * 119.99662 * 2 1 3 5 5 H 1.09000 * 109.57518 * 300.15881 * 4 2 1 6 6 C 1.53093 * 109.52110 * 180.02562 * 4 2 1 7 7 O 1.42904 * 109.42351 * 182.48039 * 6 4 2 8 8 C 1.42930 * 114.08305 * 61.15476 * 7 6 4 9 9 C 1.53096 * 109.41898 * 298.84863 * 8 7 6 10 10 C 1.53178 * 109.16278 * 57.61137 * 9 8 7 11 11 H 1.09002 * 109.54068 * 183.15004 * 10 9 8 12 12 N 1.46893 * 109.54333 * 62.88590 * 10 9 8 13 13 C 1.46896 * 111.00102 * 85.44273 * 12 10 9 14 14 C 1.53006 * 109.47263 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47236 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47221 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99959 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00289 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99651 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00130 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47235 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47182 * 120.00458 * 20 18 16 23 23 H 1.48510 * 109.47032 * 239.99817 * 20 18 16 24 24 H 1.09004 * 109.47192 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47741 * 299.99787 * 1 2 3 26 26 H 1.08998 * 109.47188 * 60.00240 * 1 2 3 27 27 H 1.08997 * 109.47467 * 239.99737 * 2 1 3 28 28 H 1.09003 * 109.46855 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47424 * 299.99731 * 3 2 1 30 30 H 1.09007 * 109.47223 * 60.00169 * 3 2 1 31 31 H 1.09002 * 109.48198 * 302.47147 * 6 4 2 32 32 H 1.08999 * 109.48029 * 62.49760 * 6 4 2 33 33 H 1.09003 * 109.47243 * 178.86599 * 8 7 6 34 34 H 1.08992 * 109.48518 * 58.83967 * 8 7 6 35 35 H 1.08999 * 109.52155 * 297.70346 * 9 8 7 36 36 H 1.08996 * 109.57060 * 177.54604 * 9 8 7 37 37 H 1.00903 * 111.00023 * 321.48861 * 12 10 9 38 38 H 1.08997 * 109.47376 * 299.99770 * 13 12 10 39 39 H 1.09005 * 109.47312 * 60.00105 * 13 12 10 40 40 H 1.08997 * 109.46945 * 300.00289 * 14 13 12 41 41 H 1.09005 * 109.46663 * 59.99962 * 14 13 12 42 42 H 1.09001 * 109.47222 * 300.00524 * 15 14 13 43 43 H 1.08999 * 109.46969 * 59.99758 * 15 14 13 44 44 H 0.97005 * 119.99736 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6752 -0.2103 2.1404 6 6 3.5708 -0.7213 1.2509 7 8 4.0449 -1.4452 2.3882 8 6 3.6450 -2.8172 2.4144 9 6 2.1170 -2.9012 2.4596 10 6 1.5370 -2.1681 1.2462 11 1 0.4484 -2.1758 1.3016 12 7 1.9728 -2.8372 0.0133 13 6 1.0781 -3.9519 -0.3252 14 6 1.5628 -4.6222 -1.6124 15 6 0.6312 -5.7837 -1.9647 16 6 1.1090 -6.4443 -3.2321 17 1 1.9893 -6.0731 -3.7357 18 6 0.4223 -7.5225 -3.7487 19 7 -0.6500 -7.9742 -3.1356 20 14 1.0150 -8.3417 -5.3193 21 1 2.2333 -7.6487 -5.8098 22 1 1.3317 -9.7665 -5.0454 23 1 -0.0494 -8.2610 -6.3518 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.9352 -1.1962 0.3399 32 1 3.9344 0.3052 1.2961 33 1 4.0619 -3.3003 3.2981 34 1 4.0103 -3.3196 1.5189 35 1 1.7534 -2.4346 3.3752 36 1 1.8079 -3.9462 2.4358 37 1 2.9286 -3.1514 0.0908 38 1 1.0804 -4.6792 0.4866 39 1 0.0661 -3.5741 -0.4717 40 1 1.5601 -3.8948 -2.4241 41 1 2.5748 -5.0000 -1.4664 42 1 0.6343 -6.5110 -1.1528 43 1 -0.3809 -5.4063 -2.1104 44 1 -1.1329 -8.7330 -3.4989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924940889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:42 Heat of formation + Delta-G solvation = -80.801548 kcal Electronic energy + Delta-G solvation = -19906.537360 eV Core-core repulsion = 17050.389097 eV Total energy + Delta-G solvation = -2856.148263 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19536 -36.44885 -35.66934 -33.66660 -31.98283 -30.19904 -29.49118 -27.46877 -25.92436 -24.32592 -23.81464 -22.51516 -20.38340 -20.19175 -19.09290 -16.75115 -16.24896 -16.16633 -15.53576 -14.92594 -14.65034 -14.48413 -14.33700 -13.79884 -13.76892 -13.42503 -12.61255 -12.48551 -12.28535 -12.21163 -12.17836 -11.71875 -11.57045 -11.42941 -11.23565 -11.13826 -10.87522 -10.60955 -10.54849 -10.52334 -10.37834 -10.15899 -9.70169 -9.39200 -9.31883 -9.03562 -8.34531 -8.13987 -5.99548 -4.01501 3.31291 3.38764 3.43248 3.80183 4.33145 4.48383 4.61755 4.73844 4.81459 4.90388 5.04074 5.13381 5.19262 5.35639 5.36498 5.39537 5.57048 5.60331 5.65666 5.68880 5.78439 5.82260 5.86280 5.90684 5.91064 5.96446 6.00989 6.07953 6.21336 6.31530 6.39772 6.55564 6.71608 6.78068 7.12715 7.13402 7.33852 7.60097 7.68952 7.83585 8.00976 8.44373 9.05989 9.62649 11.11944 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026515 B = 0.004141 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.751597 B = 6759.419537 C = 7174.665972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.151 4.151 4 C -0.101 4.101 5 H 0.073 0.927 6 C 0.062 3.938 7 O -0.386 6.386 8 C 0.061 3.939 9 C -0.188 4.188 10 C 0.086 3.914 11 H 0.083 0.917 12 N -0.681 5.681 13 C 0.060 3.940 14 C -0.106 4.106 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.334 0.666 38 H 0.023 0.977 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.013 0.987 43 H 0.015 0.985 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 15.712 10.904 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.208 4.208 4 C -0.121 4.121 5 H 0.091 0.909 6 C -0.014 4.014 7 O -0.305 6.305 8 C -0.016 4.016 9 C -0.228 4.228 10 C -0.024 4.024 11 H 0.101 0.899 12 N -0.313 5.313 13 C -0.069 4.069 14 C -0.144 4.144 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.154 0.846 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.031 0.969 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.247 16.109 10.608 19.988 hybrid contribution 0.199 -1.429 -0.327 1.480 sum 5.445 14.679 10.280 18.730 Atomic orbital electron populations 1.21811 0.95472 1.01976 1.00854 1.20957 0.95672 0.94752 0.98675 1.21945 1.00779 0.96713 1.01401 1.21786 0.96077 0.95445 0.98768 0.90915 1.22729 0.93380 0.96610 0.88711 1.87912 1.74735 1.22296 1.45524 1.22532 0.93967 0.83245 1.01901 1.22855 0.97161 1.02127 1.00609 1.21654 0.99911 0.93150 0.87715 0.89886 1.60711 1.06369 1.31085 1.33096 1.22146 0.96428 0.90482 0.97819 1.21614 0.99668 0.98502 0.94636 1.19062 0.94395 0.91811 0.96286 1.21293 1.11544 1.13888 1.08885 0.92653 1.25028 0.95008 0.97114 0.97364 1.69980 1.18169 1.25753 1.39719 0.86549 0.78774 0.79269 0.83495 1.19726 1.21054 1.21015 0.92177 0.93585 0.92999 0.89182 0.92803 0.92822 0.93159 0.92392 0.89129 0.89055 0.93081 0.90863 0.90730 0.84620 0.95853 0.91533 0.92574 0.93828 0.96890 0.96616 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.85 37.16 0.33 -1.22 16 2 C -0.08 -0.87 2.32 -90.62 -0.21 -1.08 16 3 C -0.15 -1.36 8.84 37.16 0.33 -1.03 16 4 C -0.10 -1.08 1.80 -90.48 -0.16 -1.25 16 5 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 6 C 0.06 0.67 5.46 37.21 0.20 0.88 16 7 O -0.39 -4.70 10.77 -35.23 -0.38 -5.08 16 8 C 0.06 0.66 6.58 37.21 0.24 0.91 16 9 C -0.19 -2.08 5.72 -26.59 -0.15 -2.24 16 10 C 0.09 1.02 1.92 -67.53 -0.13 0.89 16 11 H 0.08 1.04 6.29 -51.93 -0.33 0.71 16 12 N -0.68 -9.30 4.98 -106.53 -0.53 -9.83 16 13 C 0.06 0.99 5.49 -3.82 -0.02 0.97 16 14 C -0.11 -2.17 5.41 -26.73 -0.14 -2.31 16 15 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 16 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 20 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H 0.06 0.72 6.52 -51.93 -0.34 0.38 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 1.12 7.52 -51.93 -0.39 0.73 16 28 H 0.05 0.45 6.49 -51.93 -0.34 0.11 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.65 7.38 -51.93 -0.38 0.27 16 32 H 0.09 0.87 6.57 -51.93 -0.34 0.53 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.57 6.43 -51.93 -0.33 0.23 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.86 7.44 -51.93 -0.39 0.48 16 37 H 0.33 4.49 5.83 -39.29 -0.23 4.27 16 38 H 0.02 0.39 7.43 -51.93 -0.39 0.01 16 39 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -29.59 333.38 -8.50 -38.09 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.06 Total: 0.04 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -0.27 Total: -18.62 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.21 Total: -36.22 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.38 Total: -5.08 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.59 -8.50 -38.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.713 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds