Wall clock time and date at job start Mon Mar 30 2020 06:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 C 1.53004 * 109.46896 * 119.99662 * 2 1 3 5 5 H 1.09000 * 109.57518 * 300.15881 * 4 2 1 6 6 C 1.53093 * 109.52110 * 180.02562 * 4 2 1 7 7 O 1.42904 * 109.42351 * 182.48039 * 6 4 2 8 8 C 1.42930 * 114.08305 * 61.15476 * 7 6 4 9 9 C 1.53096 * 109.41898 * 298.84863 * 8 7 6 10 10 C 1.53178 * 109.16278 * 57.61137 * 9 8 7 11 11 H 1.09002 * 109.54068 * 183.15004 * 10 9 8 12 12 N 1.46893 * 109.54333 * 62.88590 * 10 9 8 13 13 C 1.46896 * 111.00102 * 85.44273 * 12 10 9 14 14 C 1.53006 * 109.47263 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47236 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47221 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99959 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00289 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99651 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00130 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47235 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47182 * 120.00458 * 20 18 16 23 23 H 1.48510 * 109.47032 * 239.99817 * 20 18 16 24 24 H 1.09004 * 109.47192 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47741 * 299.99787 * 1 2 3 26 26 H 1.08998 * 109.47188 * 60.00240 * 1 2 3 27 27 H 1.08997 * 109.47467 * 239.99737 * 2 1 3 28 28 H 1.09003 * 109.46855 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47424 * 299.99731 * 3 2 1 30 30 H 1.09007 * 109.47223 * 60.00169 * 3 2 1 31 31 H 1.09002 * 109.48198 * 302.47147 * 6 4 2 32 32 H 1.08999 * 109.48029 * 62.49760 * 6 4 2 33 33 H 1.09003 * 109.47243 * 178.86599 * 8 7 6 34 34 H 1.08992 * 109.48518 * 58.83967 * 8 7 6 35 35 H 1.08999 * 109.52155 * 297.70346 * 9 8 7 36 36 H 1.08996 * 109.57060 * 177.54604 * 9 8 7 37 37 H 1.00903 * 111.00023 * 321.48861 * 12 10 9 38 38 H 1.08997 * 109.47376 * 299.99770 * 13 12 10 39 39 H 1.09005 * 109.47312 * 60.00105 * 13 12 10 40 40 H 1.08997 * 109.46945 * 300.00289 * 14 13 12 41 41 H 1.09005 * 109.46663 * 59.99962 * 14 13 12 42 42 H 1.09001 * 109.47222 * 300.00524 * 15 14 13 43 43 H 1.08999 * 109.46969 * 59.99758 * 15 14 13 44 44 H 0.97005 * 119.99736 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6752 -0.2103 2.1404 6 6 3.5708 -0.7213 1.2509 7 8 4.0449 -1.4452 2.3882 8 6 3.6450 -2.8172 2.4144 9 6 2.1170 -2.9012 2.4596 10 6 1.5370 -2.1681 1.2462 11 1 0.4484 -2.1758 1.3016 12 7 1.9728 -2.8372 0.0133 13 6 1.0781 -3.9519 -0.3252 14 6 1.5628 -4.6222 -1.6124 15 6 0.6312 -5.7837 -1.9647 16 6 1.1090 -6.4443 -3.2321 17 1 1.9893 -6.0731 -3.7357 18 6 0.4223 -7.5225 -3.7487 19 7 -0.6500 -7.9742 -3.1356 20 14 1.0150 -8.3417 -5.3193 21 1 2.2333 -7.6487 -5.8098 22 1 1.3317 -9.7665 -5.0454 23 1 -0.0494 -8.2610 -6.3518 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.9352 -1.1962 0.3399 32 1 3.9344 0.3052 1.2961 33 1 4.0619 -3.3003 3.2981 34 1 4.0103 -3.3196 1.5189 35 1 1.7534 -2.4346 3.3752 36 1 1.8079 -3.9462 2.4358 37 1 2.9286 -3.1514 0.0908 38 1 1.0804 -4.6792 0.4866 39 1 0.0661 -3.5741 -0.4717 40 1 1.5601 -3.8948 -2.4241 41 1 2.5748 -5.0000 -1.4664 42 1 0.6343 -6.5110 -1.1528 43 1 -0.3809 -5.4063 -2.1104 44 1 -1.1329 -8.7330 -3.4989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924940889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:42 Heat of formation + Delta-G solvation = -98.281140 kcal Electronic energy + Delta-G solvation = -19907.295332 eV Core-core repulsion = 17050.389097 eV Total energy + Delta-G solvation = -2856.906235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.13128 -37.53414 -36.79904 -35.43423 -33.64333 -31.38886 -30.65529 -28.34308 -27.65591 -25.30508 -24.75594 -24.21267 -21.93535 -21.25929 -20.06629 -18.52387 -17.56183 -17.13522 -16.60162 -16.56642 -15.98182 -15.62438 -15.52083 -15.05025 -14.74471 -14.37818 -14.23842 -13.81772 -13.53948 -13.34178 -13.22634 -13.00687 -12.92388 -12.74824 -12.48951 -12.41753 -12.27005 -12.09644 -11.99487 -11.58394 -11.42592 -11.39186 -11.26741 -11.17492 -10.91540 -10.56398 -10.28362 -9.29411 -8.20872 -6.31712 1.39522 1.39881 1.53393 2.40523 2.95054 3.12529 3.20799 3.71589 3.83051 3.94669 3.98139 4.19646 4.22357 4.29238 4.34115 4.41521 4.52217 4.55337 4.69532 4.77038 4.79179 4.82313 4.87303 4.93464 5.01016 5.01861 5.04219 5.11433 5.14758 5.17298 5.21439 5.26153 5.40019 5.51691 5.56128 5.69858 5.75042 5.85690 6.08191 6.26015 6.27272 6.46094 6.85545 7.37757 8.91256 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026515 B = 0.004141 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.751597 B = 6759.419537 C = 7174.665972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.094 4.094 5 H 0.080 0.920 6 C 0.062 3.938 7 O -0.397 6.397 8 C 0.059 3.941 9 C -0.184 4.184 10 C 0.085 3.915 11 H 0.077 0.923 12 N -0.676 5.676 13 C 0.075 3.925 14 C -0.091 4.091 15 C 0.026 3.974 16 C -0.542 4.542 17 H 0.059 0.941 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.278 1.278 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.338 0.662 38 H 0.022 0.978 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.048 0.952 42 H -0.010 1.010 43 H -0.010 1.010 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 16.651 10.940 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 C -0.205 4.205 4 C -0.113 4.113 5 H 0.098 0.902 6 C -0.014 4.014 7 O -0.316 6.316 8 C -0.018 4.018 9 C -0.223 4.223 10 C -0.025 4.025 11 H 0.095 0.905 12 N -0.307 5.307 13 C -0.054 4.054 14 C -0.129 4.129 15 C -0.012 4.012 16 C -0.580 4.580 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.789 3.211 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.204 1.204 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.040 0.960 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.008 0.992 43 H 0.009 0.991 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.379 17.065 10.653 21.104 hybrid contribution -0.177 -1.706 -0.307 1.742 sum 6.202 15.359 10.346 19.529 Atomic orbital electron populations 1.21793 0.95690 1.01004 1.01473 1.20896 0.95437 0.95743 0.97700 1.21906 1.01218 0.95387 1.01942 1.21726 0.96122 0.94361 0.99075 0.90179 1.22794 0.93206 0.97262 0.88154 1.87903 1.74958 1.22743 1.45958 1.22608 0.93722 0.82967 1.02490 1.22802 0.97377 1.01661 1.00444 1.21702 0.99702 0.93946 0.87138 0.90506 1.60625 1.05979 1.29543 1.34601 1.21813 0.96511 0.91143 0.95898 1.21355 0.98545 0.96596 0.96373 1.18964 0.94277 0.93029 0.94926 1.21725 1.11831 1.14487 1.09924 0.92323 1.25976 0.95020 0.97777 1.01041 1.70106 1.19396 1.26371 1.41574 0.85404 0.78585 0.78199 0.78892 1.18623 1.20303 1.20354 0.93913 0.92400 0.92962 0.91144 0.92090 0.92645 0.92278 0.93022 0.87633 0.87639 0.93390 0.89967 0.91331 0.84205 0.96014 0.92204 0.92942 0.93358 0.99166 0.99123 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.85 71.98 0.64 -2.29 16 2 C -0.08 -1.57 2.32 -10.79 -0.03 -1.59 16 3 C -0.15 -2.34 8.84 71.98 0.64 -1.70 16 4 C -0.09 -1.84 1.80 -10.70 -0.02 -1.86 16 5 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 6 C 0.06 1.23 5.46 72.01 0.39 1.62 16 7 O -0.40 -8.88 10.77 -148.98 -1.60 -10.49 16 8 C 0.06 1.20 6.58 72.01 0.47 1.67 16 9 C -0.18 -3.82 5.72 30.69 0.18 -3.64 16 10 C 0.09 1.93 1.92 45.04 0.09 2.02 16 11 H 0.08 1.87 6.29 -2.39 -0.02 1.85 16 12 N -0.68 -18.08 4.98 -490.96 -2.44 -20.53 16 13 C 0.08 2.53 5.49 86.31 0.47 3.00 16 14 C -0.09 -3.74 5.41 30.60 0.17 -3.57 16 15 C 0.03 1.37 4.97 29.85 0.15 1.52 16 16 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 18 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 19 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 20 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H 0.04 1.02 6.52 -2.39 -0.02 1.00 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.70 7.52 -2.39 -0.02 1.68 16 28 H 0.06 0.88 6.49 -2.39 -0.02 0.86 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.05 1.09 7.38 -2.39 -0.02 1.07 16 32 H 0.11 1.76 6.57 -2.39 -0.02 1.75 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.00 6.43 -2.39 -0.02 0.99 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.52 7.44 -2.39 -0.02 1.50 16 37 H 0.34 8.78 5.83 -89.69 -0.52 8.26 16 38 H 0.02 0.73 7.43 -2.39 -0.02 0.72 16 39 H 0.06 2.09 8.06 -2.38 -0.02 2.07 16 40 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -62.99 333.38 2.53 -60.46 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.42 Total: 16.39 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 3.84 Total: -35.44 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.16 Total: -77.57 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -1.60 Total: -10.49 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -62.99 2.53 -60.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924940889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.823 kcal (2) G-P(sol) polarization free energy of solvation -62.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds