Wall clock time and date at job start Mon Mar 30 2020 07:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47020 * 2 1 4 4 O 1.42901 * 109.47011 * 180.02562 * 3 2 1 5 5 C 1.42898 * 113.99857 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.53850 * 29.88922 * 5 4 3 7 7 C 1.53123 * 109.50158 * 269.79588 * 5 4 3 8 8 C 1.53110 * 109.15661 * 182.39910 * 7 5 4 9 9 C 1.53033 * 109.27945 * 57.67123 * 8 7 5 10 10 N 1.46845 * 109.51638 * 300.80768 * 9 8 7 11 11 C 1.46895 * 111.00329 * 185.84261 * 10 9 8 12 12 H 1.09007 * 109.47046 * 50.99985 * 11 10 9 13 13 C 1.50696 * 109.47341 * 290.99495 * 11 10 9 14 14 H 1.08005 * 119.99707 * 0.02562 * 13 11 10 15 15 C 1.37874 * 120.00169 * 179.97438 * 13 11 10 16 16 N 1.31516 * 120.00246 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00030 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47019 * 60.00258 * 17 15 13 19 19 H 1.48497 * 109.47245 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47382 * 300.00224 * 17 15 13 21 21 C 1.53004 * 109.47385 * 170.99454 * 11 10 9 22 22 C 1.52997 * 109.47095 * 296.92151 * 21 11 10 23 23 C 1.46847 * 111.20057 * 61.74180 * 10 9 8 24 24 H 1.08997 * 109.46988 * 60.00435 * 1 2 3 25 25 H 1.09008 * 109.46906 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47327 * 299.99816 * 1 2 3 27 27 H 1.09007 * 109.47287 * 239.99723 * 2 1 3 28 28 H 1.09000 * 109.47113 * 120.00329 * 2 1 3 29 29 H 1.08999 * 109.47418 * 60.00015 * 3 2 1 30 30 H 1.08997 * 109.46885 * 299.99628 * 3 2 1 31 31 H 1.09002 * 109.52388 * 302.31446 * 7 5 4 32 32 H 1.09003 * 109.52125 * 62.43167 * 7 5 4 33 33 H 1.09002 * 109.51086 * 297.72623 * 8 7 5 34 34 H 1.08998 * 109.49843 * 177.60915 * 8 7 5 35 35 H 1.08996 * 109.46619 * 180.79610 * 9 8 7 36 36 H 1.09005 * 109.46074 * 60.81540 * 9 8 7 37 37 H 0.96998 * 120.00042 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.46649 * 56.91721 * 21 11 10 39 39 H 1.08993 * 109.47113 * 176.91469 * 21 11 10 40 40 H 1.09007 * 109.47245 * 305.05557 * 22 21 11 41 41 H 1.09000 * 109.47548 * 65.05601 * 22 21 11 42 42 H 1.09003 * 109.47207 * 185.06420 * 22 21 11 43 43 H 1.09007 * 109.45856 * 58.27719 * 23 10 9 44 44 H 1.08996 * 109.46851 * 178.25564 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7479 -0.0001 6 1 3.3850 3.4429 0.5125 7 6 4.2621 3.2137 -1.4433 8 6 4.9397 4.5867 -1.4337 9 6 6.2633 4.4917 -0.6716 10 7 6.0069 4.0431 0.7029 11 6 7.2374 4.0730 1.5047 12 1 7.7119 5.0494 1.4059 13 6 8.1811 3.0042 1.0166 14 1 7.8954 2.3668 0.1928 15 6 9.4095 2.8407 1.6209 16 7 9.7576 3.6172 2.6237 17 14 10.5794 1.5163 1.0154 18 1 10.9113 1.7634 -0.4108 19 1 11.8238 1.5472 1.8251 20 1 9.9335 0.1859 1.1500 21 6 6.8951 3.8187 2.9741 22 6 5.9988 4.9456 3.4912 23 6 5.3995 2.7063 0.7207 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 4.8957 2.4983 -1.9676 32 1 3.2987 3.2853 -1.9481 33 1 4.2886 5.3105 -0.9434 34 1 5.1317 4.9048 -2.4584 35 1 6.7416 5.4709 -0.6508 36 1 6.9190 3.7778 -1.1703 37 1 10.6217 3.5019 3.0490 38 1 6.3717 2.8670 3.0657 39 1 7.8132 3.7864 3.5606 40 1 6.4850 5.9056 3.3172 41 1 5.0443 4.9212 2.9653 42 1 5.8285 4.8131 4.5597 43 1 6.0595 2.0009 0.2156 44 1 5.2502 2.3888 1.7526 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042422236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:16 Heat of formation + Delta-G solvation = -67.315089 kcal Electronic energy + Delta-G solvation = -20322.050022 eV Core-core repulsion = 17466.486576 eV Total energy + Delta-G solvation = -2855.563446 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.00612 -37.13901 -34.50704 -33.39700 -31.81526 -30.40835 -29.36052 -26.51418 -25.93047 -23.82719 -22.55250 -21.80530 -21.50569 -19.60090 -18.88732 -16.52201 -16.17749 -15.76129 -15.54693 -14.55349 -14.20892 -13.97841 -13.89125 -13.25139 -13.07997 -12.86334 -12.63017 -12.47849 -12.28305 -12.00097 -11.68333 -11.38646 -11.21316 -11.07765 -10.98696 -10.85740 -10.66505 -10.51573 -10.45921 -10.28319 -10.00114 -9.87711 -9.62248 -9.47890 -9.08011 -8.93752 -8.33899 -7.11025 -5.96394 -4.09339 3.30652 3.35377 3.38873 3.81873 4.42416 4.91109 4.95300 5.11143 5.24566 5.26359 5.30504 5.37042 5.44325 5.47162 5.57221 5.64205 5.77488 5.85964 5.98410 6.05097 6.11270 6.15152 6.24122 6.30746 6.35104 6.42860 6.48078 6.57428 6.67222 6.73431 6.80754 6.89324 7.13855 7.21153 7.35993 7.56806 7.64750 7.80692 7.99645 8.17840 8.34881 8.49321 8.99964 9.58123 11.02983 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.005674 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.587821 B = 4933.828386 C = 5163.742949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.063 3.937 4 O -0.385 6.385 5 C 0.093 3.907 6 H 0.060 0.940 7 C -0.137 4.137 8 C -0.113 4.113 9 C 0.060 3.940 10 N -0.531 5.531 11 C 0.216 3.784 12 H 0.040 0.960 13 C -0.543 4.543 14 H 0.056 0.944 15 C 0.069 3.931 16 N -0.886 5.886 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.112 4.112 22 C -0.136 4.136 23 C 0.069 3.931 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.261 0.739 38 H 0.033 0.967 39 H 0.092 0.908 40 H 0.039 0.961 41 H 0.044 0.956 42 H 0.024 0.976 43 H 0.045 0.955 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.992 -1.619 -4.904 14.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.014 4.014 4 O -0.303 6.303 5 C 0.035 3.965 6 H 0.078 0.922 7 C -0.175 4.175 8 C -0.151 4.151 9 C -0.069 4.069 10 N -0.256 5.256 11 C 0.110 3.890 12 H 0.058 0.942 13 C -0.582 4.582 14 H 0.074 0.926 15 C -0.133 4.133 16 N -0.525 5.525 17 Si 0.714 3.286 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.150 4.150 22 C -0.194 4.194 23 C -0.060 4.060 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.058 -1.422 -4.555 14.845 hybrid contribution 1.168 -1.096 -0.724 1.758 sum -12.889 -2.518 -5.279 14.154 Atomic orbital electron populations 1.21693 0.95137 1.01914 1.01871 1.21460 0.95322 0.96140 1.03260 1.22490 0.82085 0.97157 0.99629 1.87882 1.18570 1.28819 1.95055 1.22211 0.96031 0.83133 0.95159 0.92198 1.22033 1.00119 0.97865 0.97436 1.21563 0.97861 0.96200 0.99479 1.21885 0.94668 1.00207 0.90100 1.62326 1.29720 1.23073 1.10525 1.19275 0.83784 0.96668 0.89243 0.94231 1.21710 1.01149 1.18267 1.17106 0.92574 1.24888 0.97803 0.95813 0.94799 1.69863 1.21515 1.38408 1.22670 0.86749 0.80411 0.82609 0.78798 1.20407 1.21260 1.20291 1.21616 0.99545 0.95133 0.98742 1.21692 1.00091 0.99742 0.97827 1.21813 0.91880 0.92166 1.00125 0.92717 0.92273 0.92581 0.91345 0.91139 0.93665 0.93956 0.91707 0.92967 0.91846 0.92254 0.91654 0.94517 0.92866 0.94790 0.88955 0.94178 0.93646 0.95639 0.93655 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.37 6.30 -26.73 -0.17 -1.53 16 3 C 0.06 0.82 5.75 37.16 0.21 1.03 16 4 O -0.38 -6.44 9.99 -35.23 -0.35 -6.79 16 5 C 0.09 1.58 2.77 -26.65 -0.07 1.50 16 6 H 0.06 0.99 7.79 -51.93 -0.40 0.59 16 7 C -0.14 -2.12 5.62 -26.61 -0.15 -2.27 16 8 C -0.11 -1.75 6.09 -26.66 -0.16 -1.91 16 9 C 0.06 1.16 5.18 -3.84 -0.02 1.14 16 10 N -0.53 -11.16 4.08 -228.08 -0.93 -12.09 16 11 C 0.22 5.30 1.73 -68.87 -0.12 5.18 16 12 H 0.04 1.07 8.01 -51.92 -0.42 0.66 16 13 C -0.54 -14.55 7.22 -34.44 -0.25 -14.79 16 14 H 0.06 1.53 5.84 -52.48 -0.31 1.22 16 15 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 16 N -0.89 -24.87 11.30 55.43 0.63 -24.24 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C -0.11 -2.66 5.09 -26.73 -0.14 -2.80 16 22 C -0.14 -2.77 9.72 37.16 0.36 -2.41 16 23 C 0.07 1.40 4.44 -3.83 -0.02 1.39 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.04 0.50 7.95 -51.93 -0.41 0.09 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.71 7.95 -51.93 -0.41 0.30 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.25 8.03 -51.93 -0.42 0.84 16 36 H 0.04 0.77 7.22 -51.93 -0.38 0.40 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.03 0.80 6.26 -51.93 -0.33 0.48 16 39 H 0.09 2.45 5.99 -51.93 -0.31 2.13 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.88 7.84 -51.93 -0.41 0.48 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.05 1.03 6.42 -51.92 -0.33 0.70 16 44 H 0.07 1.61 6.11 -51.93 -0.32 1.29 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -27.47 334.59 -9.10 -36.57 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -8.22 Total: -0.21 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -0.25 Total: -14.57 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.30 Total: -36.34 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.35 Total: -6.79 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.47 -9.10 -36.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042422236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.741 kcal (2) G-P(sol) polarization free energy of solvation -27.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds