Wall clock time and date at job start Mon Mar 30 2020 07:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 O 1.42900 * 109.46976 * 179.97438 * 3 2 1 5 5 C 1.42901 * 113.99887 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.50148 * 329.99889 * 5 4 3 7 7 C 1.53119 * 109.50423 * 90.08021 * 5 4 3 8 8 C 1.53114 * 109.16021 * 177.59907 * 7 5 4 9 9 C 1.53042 * 109.27877 * 302.34334 * 8 7 5 10 10 N 1.46847 * 109.52271 * 59.17922 * 9 8 7 11 11 C 1.46903 * 111.00129 * 174.16040 * 10 9 8 12 12 H 1.08997 * 109.47301 * 178.95390 * 11 10 9 13 13 C 1.50706 * 109.46846 * 58.95483 * 11 10 9 14 14 H 1.07999 * 119.99762 * 0.02562 * 13 11 10 15 15 C 1.37871 * 119.99979 * 179.97438 * 13 11 10 16 16 N 1.31511 * 119.99990 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 119.99798 * 0.02562 * 15 13 11 18 18 H 1.48502 * 109.46968 * 90.00085 * 17 15 13 19 19 H 1.48507 * 109.46987 * 209.99337 * 17 15 13 20 20 H 1.48493 * 109.47362 * 329.99618 * 17 15 13 21 21 C 1.53001 * 109.47103 * 298.96141 * 11 10 9 22 22 C 1.53006 * 109.46501 * 294.99558 * 21 11 10 23 23 C 1.46846 * 111.23566 * 298.28155 * 10 9 8 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09002 * 109.51808 * 297.49981 * 7 5 4 32 32 H 1.09002 * 109.52135 * 57.68972 * 7 5 4 33 33 H 1.08992 * 109.50660 * 62.28660 * 8 7 5 34 34 H 1.09006 * 109.50462 * 182.40735 * 8 7 5 35 35 H 1.08998 * 109.46422 * 179.19723 * 9 8 7 36 36 H 1.09005 * 109.46115 * 299.16989 * 9 8 7 37 37 H 0.97009 * 120.00159 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.47123 * 54.99349 * 21 11 10 39 39 H 1.09001 * 109.47064 * 174.99797 * 21 11 10 40 40 H 1.08998 * 109.47510 * 60.00829 * 22 21 11 41 41 H 1.09000 * 109.46880 * 180.02562 * 22 21 11 42 42 H 1.08999 * 109.47261 * 299.99706 * 22 21 11 43 43 H 1.09005 * 109.42680 * 301.68730 * 23 10 9 44 44 H 1.08995 * 109.49804 * 181.71737 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 1 3.3855 3.4421 -0.5144 7 6 4.2594 3.2150 1.4432 8 6 4.9370 4.5881 1.4338 9 6 6.2621 4.4924 0.6741 10 7 6.0083 4.0425 -0.7005 11 6 7.2404 4.0716 -1.5000 12 1 7.0278 3.7161 -2.5082 13 6 8.2749 3.1811 -0.8611 14 1 8.0403 2.6468 0.0477 15 6 9.5203 3.0479 -1.4372 16 7 10.4228 2.2705 -0.8800 17 14 9.9257 3.9716 -3.0094 18 1 10.4987 5.2989 -2.6699 19 1 10.9133 3.1937 -3.8000 20 1 8.6876 4.1566 -3.8082 21 6 7.7719 5.5048 -1.5658 22 6 6.7758 6.3836 -2.3252 23 6 5.4005 2.7058 -0.7190 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.2949 3.2883 1.9457 32 1 4.8920 2.5001 1.9694 33 1 4.2869 5.3114 0.9418 34 1 5.1274 4.9070 2.4586 35 1 6.7404 5.4716 0.6533 36 1 6.9170 3.7790 1.1746 37 1 11.2993 2.1770 -1.2852 38 1 7.9004 5.8914 -0.5549 39 1 8.7315 5.5130 -2.0828 40 1 5.8163 6.3754 -1.8082 41 1 7.1546 7.4045 -2.3726 42 1 6.6473 5.9969 -3.3362 43 1 6.0597 2.0007 -0.2126 44 1 5.2527 2.3876 -1.7510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042422237.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:19 Heat of formation + Delta-G solvation = -58.706899 kcal Electronic energy + Delta-G solvation = -20279.714236 eV Core-core repulsion = 17424.524070 eV Total energy + Delta-G solvation = -2855.190167 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.09652 -37.32832 -34.64369 -33.35433 -31.97676 -31.02194 -29.25555 -27.06378 -25.96914 -23.70004 -22.48862 -22.08578 -21.50793 -19.89461 -18.99916 -16.63379 -16.44693 -15.82112 -15.54546 -15.02270 -14.27344 -13.99073 -13.79188 -13.58983 -13.26210 -12.79593 -12.67442 -12.53933 -12.43231 -12.12488 -11.95486 -11.67362 -11.62058 -11.13733 -11.08049 -11.00583 -10.78581 -10.55916 -10.45573 -10.32833 -10.09365 -9.90485 -9.55695 -9.53451 -9.29586 -9.03589 -8.55359 -7.17026 -6.10141 -4.10827 3.26307 3.37746 3.39809 3.75922 4.38535 4.88580 4.89528 5.04778 5.19067 5.21118 5.27642 5.29963 5.41132 5.44181 5.52961 5.61796 5.72878 5.84168 5.90072 5.98995 6.02266 6.02763 6.08428 6.13513 6.19457 6.22739 6.28364 6.41968 6.44990 6.59607 6.68982 6.72487 6.81961 6.87279 6.93824 7.10488 7.23529 7.54564 7.57240 8.08987 8.16459 8.46234 8.92328 9.53073 11.02705 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024847 B = 0.005412 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.607530 B = 5172.169215 C = 5510.569677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.064 3.936 4 O -0.384 6.384 5 C 0.095 3.905 6 H 0.060 0.940 7 C -0.137 4.137 8 C -0.113 4.113 9 C 0.054 3.946 10 N -0.523 5.523 11 C 0.183 3.817 12 H 0.039 0.961 13 C -0.544 4.544 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.898 5.898 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.298 1.298 20 H -0.264 1.264 21 C -0.123 4.123 22 C -0.144 4.144 23 C 0.069 3.931 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.263 0.737 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.041 0.959 43 H 0.051 0.949 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.910 2.135 1.820 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.013 4.013 4 O -0.302 6.302 5 C 0.037 3.963 6 H 0.078 0.922 7 C -0.175 4.175 8 C -0.151 4.151 9 C -0.074 4.074 10 N -0.248 5.248 11 C 0.075 3.925 12 H 0.057 0.943 13 C -0.583 4.583 14 H 0.095 0.905 15 C -0.128 4.128 16 N -0.535 5.535 17 Si 0.717 3.283 18 H -0.206 1.206 19 H -0.226 1.226 20 H -0.189 1.189 21 C -0.160 4.160 22 C -0.201 4.201 23 C -0.060 4.060 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.960 2.209 1.590 16.190 hybrid contribution 0.910 0.092 -0.397 0.997 sum -15.050 2.302 1.193 15.271 Atomic orbital electron populations 1.21693 0.95126 1.01944 1.01851 1.21461 0.95320 0.96093 1.03332 1.22498 0.81985 0.97232 0.99633 1.87892 1.18637 1.28654 1.95054 1.22140 0.95611 0.83246 0.95270 0.92157 1.22040 1.00240 0.97951 0.97303 1.21572 0.97773 0.96157 0.99638 1.22014 0.94875 1.00948 0.89564 1.62223 1.28031 1.23132 1.11427 1.19702 0.86601 0.92260 0.93903 0.94308 1.21621 0.97255 1.27425 1.11981 0.90550 1.24976 0.96212 0.94739 0.96921 1.69919 1.05431 1.38180 1.39999 0.86862 0.78330 0.79076 0.84027 1.20554 1.22613 1.18857 1.21963 0.97204 0.97153 0.99703 1.21739 1.00487 0.97824 1.00059 1.21772 0.92486 0.91855 0.99882 0.92243 0.92620 0.92699 0.91258 0.91134 0.93697 0.93885 0.92868 0.91469 0.91946 0.92096 0.90963 0.93622 0.92685 0.92114 0.93454 0.91981 0.94799 0.93937 0.93063 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.12 -1.34 6.30 -26.73 -0.17 -1.51 16 3 C 0.06 0.79 5.75 37.16 0.21 1.01 16 4 O -0.38 -6.28 9.99 -35.23 -0.35 -6.63 16 5 C 0.10 1.57 2.77 -26.65 -0.07 1.49 16 6 H 0.06 0.94 7.79 -51.93 -0.40 0.54 16 7 C -0.14 -2.10 5.62 -26.61 -0.15 -2.25 16 8 C -0.11 -1.72 6.09 -26.65 -0.16 -1.88 16 9 C 0.05 1.02 4.80 -3.83 -0.02 1.00 16 10 N -0.52 -10.55 4.09 -228.07 -0.93 -11.48 16 11 C 0.18 4.24 1.33 -68.86 -0.09 4.14 16 12 H 0.04 0.95 7.13 -51.93 -0.37 0.58 16 13 C -0.54 -14.87 7.77 -34.44 -0.27 -15.13 16 14 H 0.08 2.29 6.09 -52.49 -0.32 1.97 16 15 C 0.07 2.11 5.45 -17.82 -0.10 2.02 16 16 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 17 Si 0.89 21.88 24.41 -169.99 -4.15 17.73 16 18 H -0.28 -6.70 6.83 56.52 0.39 -6.32 16 19 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 20 H -0.26 -6.25 6.53 56.52 0.37 -5.88 16 21 C -0.12 -2.62 4.73 -26.73 -0.13 -2.75 16 22 C -0.14 -2.58 9.80 37.16 0.36 -2.22 16 23 C 0.07 1.36 4.78 -3.83 -0.02 1.34 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.04 0.49 7.94 -51.93 -0.41 0.08 16 31 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.35 5.94 -51.93 -0.31 1.04 16 36 H 0.05 0.99 6.61 -51.93 -0.34 0.65 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.06 1.27 6.06 -51.93 -0.31 0.96 16 39 H 0.05 1.08 3.22 -51.93 -0.17 0.92 16 40 H 0.06 1.07 7.75 -51.93 -0.40 0.66 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.05 1.17 6.98 -51.93 -0.36 0.81 16 44 H 0.07 1.38 8.07 -51.93 -0.42 0.97 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -29.23 327.37 -8.02 -37.26 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.07 Total: 0.30 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -0.23 Total: -15.59 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.16 Total: -38.01 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.35 Total: -6.63 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.15 Total: 17.73 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.23 -8.02 -37.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042422237.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.449 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds