Wall clock time and date at job start Mon Mar 30 2020 07:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 O 1.42900 * 109.46976 * 179.97438 * 3 2 1 5 5 C 1.42901 * 113.99887 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.50148 * 329.99889 * 5 4 3 7 7 C 1.53119 * 109.50423 * 90.08021 * 5 4 3 8 8 C 1.53114 * 109.16021 * 177.59907 * 7 5 4 9 9 C 1.53042 * 109.27877 * 302.34334 * 8 7 5 10 10 N 1.46847 * 109.52271 * 59.17922 * 9 8 7 11 11 C 1.46903 * 111.00129 * 174.16040 * 10 9 8 12 12 H 1.08997 * 109.47301 * 178.95390 * 11 10 9 13 13 C 1.50706 * 109.46846 * 58.95483 * 11 10 9 14 14 H 1.07999 * 119.99762 * 0.02562 * 13 11 10 15 15 C 1.37871 * 119.99979 * 179.97438 * 13 11 10 16 16 N 1.31511 * 119.99990 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 119.99798 * 0.02562 * 15 13 11 18 18 H 1.48502 * 109.46968 * 90.00085 * 17 15 13 19 19 H 1.48507 * 109.46987 * 209.99337 * 17 15 13 20 20 H 1.48493 * 109.47362 * 329.99618 * 17 15 13 21 21 C 1.53001 * 109.47103 * 298.96141 * 11 10 9 22 22 C 1.53006 * 109.46501 * 294.99558 * 21 11 10 23 23 C 1.46846 * 111.23566 * 298.28155 * 10 9 8 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09002 * 109.51808 * 297.49981 * 7 5 4 32 32 H 1.09002 * 109.52135 * 57.68972 * 7 5 4 33 33 H 1.08992 * 109.50660 * 62.28660 * 8 7 5 34 34 H 1.09006 * 109.50462 * 182.40735 * 8 7 5 35 35 H 1.08998 * 109.46422 * 179.19723 * 9 8 7 36 36 H 1.09005 * 109.46115 * 299.16989 * 9 8 7 37 37 H 0.97009 * 120.00159 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.47123 * 54.99349 * 21 11 10 39 39 H 1.09001 * 109.47064 * 174.99797 * 21 11 10 40 40 H 1.08998 * 109.47510 * 60.00829 * 22 21 11 41 41 H 1.09000 * 109.46880 * 180.02562 * 22 21 11 42 42 H 1.08999 * 109.47261 * 299.99706 * 22 21 11 43 43 H 1.09005 * 109.42680 * 301.68730 * 23 10 9 44 44 H 1.08995 * 109.49804 * 181.71737 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 1 3.3855 3.4421 -0.5144 7 6 4.2594 3.2150 1.4432 8 6 4.9370 4.5881 1.4338 9 6 6.2621 4.4924 0.6741 10 7 6.0083 4.0425 -0.7005 11 6 7.2404 4.0716 -1.5000 12 1 7.0278 3.7161 -2.5082 13 6 8.2749 3.1811 -0.8611 14 1 8.0403 2.6468 0.0477 15 6 9.5203 3.0479 -1.4372 16 7 10.4228 2.2705 -0.8800 17 14 9.9257 3.9716 -3.0094 18 1 10.4987 5.2989 -2.6699 19 1 10.9133 3.1937 -3.8000 20 1 8.6876 4.1566 -3.8082 21 6 7.7719 5.5048 -1.5658 22 6 6.7758 6.3836 -2.3252 23 6 5.4005 2.7058 -0.7190 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.2949 3.2883 1.9457 32 1 4.8920 2.5001 1.9694 33 1 4.2869 5.3114 0.9418 34 1 5.1274 4.9070 2.4586 35 1 6.7404 5.4716 0.6533 36 1 6.9170 3.7790 1.1746 37 1 11.2993 2.1770 -1.2852 38 1 7.9004 5.8914 -0.5549 39 1 8.7315 5.5130 -2.0828 40 1 5.8163 6.3754 -1.8082 41 1 7.1546 7.4045 -2.3726 42 1 6.6473 5.9969 -3.3362 43 1 6.0597 2.0007 -0.2126 44 1 5.2527 2.3876 -1.7510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042422237.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:18 Heat of formation + Delta-G solvation = -77.804000 kcal Electronic energy + Delta-G solvation = -20280.542349 eV Core-core repulsion = 17424.524070 eV Total energy + Delta-G solvation = -2856.018279 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.55764 -38.72496 -36.10696 -34.45462 -33.99391 -32.52274 -30.64824 -28.95482 -26.89662 -25.43273 -24.00085 -23.61946 -22.40376 -21.45861 -20.70237 -18.61744 -17.83967 -17.18519 -16.74808 -16.52620 -16.02050 -15.28523 -15.13028 -15.00911 -14.93601 -14.47541 -13.99658 -13.94827 -13.59517 -13.37686 -13.34863 -13.26876 -12.86388 -12.78968 -12.51896 -12.20098 -12.11316 -11.98930 -11.83259 -11.70628 -11.55544 -11.49333 -11.36827 -11.18765 -11.09374 -10.70205 -10.32775 -8.97928 -8.32593 -6.37181 1.28560 1.34557 1.45097 2.29629 2.54848 3.03000 3.44216 3.86122 3.93278 4.06642 4.08795 4.17301 4.31601 4.33444 4.40281 4.43998 4.52403 4.61754 4.62915 4.64451 4.68284 4.86045 4.88397 4.91298 4.97145 5.03018 5.06791 5.10960 5.14339 5.16952 5.24261 5.26288 5.30238 5.38036 5.42778 5.45850 5.54278 5.63264 6.12642 6.31328 6.36508 6.51973 6.70785 7.30805 8.84217 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024847 B = 0.005412 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.607530 B = 5172.169215 C = 5510.569677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.057 3.943 4 O -0.410 6.410 5 C 0.105 3.895 6 H 0.081 0.919 7 C -0.134 4.134 8 C -0.103 4.103 9 C 0.054 3.946 10 N -0.507 5.507 11 C 0.184 3.816 12 H 0.029 0.971 13 C -0.539 4.539 14 H 0.031 0.969 15 C 0.015 3.985 16 N -0.949 5.949 17 Si 0.950 3.050 18 H -0.263 1.263 19 H -0.302 1.302 20 H -0.245 1.245 21 C -0.122 4.122 22 C -0.135 4.135 23 C 0.070 3.930 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.003 0.997 37 H 0.264 0.736 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.005 0.995 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.611 4.512 1.118 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.019 4.019 4 O -0.329 6.329 5 C 0.047 3.953 6 H 0.099 0.901 7 C -0.172 4.172 8 C -0.140 4.140 9 C -0.074 4.074 10 N -0.231 5.231 11 C 0.076 3.924 12 H 0.047 0.953 13 C -0.578 4.578 14 H 0.049 0.951 15 C -0.183 4.183 16 N -0.590 5.590 17 Si 0.777 3.223 18 H -0.189 1.189 19 H -0.230 1.230 20 H -0.169 1.169 21 C -0.160 4.160 22 C -0.192 4.192 23 C -0.059 4.059 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.024 0.976 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.698 4.599 0.898 19.277 hybrid contribution 1.714 -0.762 -0.092 1.878 sum -16.984 3.837 0.806 17.431 Atomic orbital electron populations 1.21662 0.92839 1.02883 1.02633 1.21493 0.97210 0.95003 1.02526 1.22772 0.79737 0.98561 1.00862 1.87875 1.21231 1.28611 1.95216 1.21962 0.93602 0.83988 0.95704 0.90120 1.22019 1.01374 0.97352 0.96437 1.21531 0.95489 0.96606 1.00423 1.22080 0.96862 0.99706 0.88760 1.62289 1.26050 1.22821 1.11958 1.19618 0.86590 0.92880 0.93325 0.95291 1.21878 0.98399 1.27198 1.10333 0.95108 1.25854 0.96094 0.95788 1.00574 1.70079 1.06106 1.40573 1.42194 0.85834 0.78643 0.78090 0.79769 1.18930 1.23006 1.16882 1.21875 0.97571 0.96142 1.00376 1.21655 0.99768 0.98282 0.99479 1.21760 0.94053 0.90674 0.99404 0.91306 0.91934 0.91777 0.91972 0.92156 0.92627 0.92286 0.89643 0.93890 0.89624 0.89924 0.90437 0.97845 0.92676 0.92075 0.94728 0.90994 0.92215 0.93764 0.97630 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -2.52 6.30 30.60 0.19 -2.32 16 3 C 0.06 1.30 5.75 71.98 0.41 1.72 16 4 O -0.41 -13.21 9.99 -148.98 -1.49 -14.70 16 5 C 0.11 3.36 2.77 30.65 0.08 3.44 16 6 H 0.08 2.27 7.79 -2.38 -0.02 2.25 16 7 C -0.13 -3.88 5.62 30.67 0.17 -3.70 16 8 C -0.10 -2.87 6.09 30.65 0.19 -2.68 16 9 C 0.05 2.04 4.80 86.33 0.41 2.45 16 10 N -0.51 -20.41 4.09 -875.48 -3.58 -23.99 16 11 C 0.18 8.59 1.33 44.17 0.06 8.65 16 12 H 0.03 1.42 7.13 -2.39 -0.02 1.40 16 13 C -0.54 -30.90 7.77 25.60 0.20 -30.70 16 14 H 0.03 2.00 6.09 -2.91 -0.02 1.99 16 15 C 0.01 0.86 5.45 84.65 0.46 1.32 16 16 N -0.95 -60.47 13.96 21.44 0.30 -60.17 16 17 Si 0.95 45.53 24.41 68.60 1.67 47.20 16 18 H -0.26 -11.92 6.83 99.48 0.68 -11.24 16 19 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 20 H -0.25 -10.90 6.53 99.48 0.65 -10.25 16 21 C -0.12 -5.01 4.73 30.60 0.14 -4.87 16 22 C -0.13 -4.35 9.80 71.98 0.71 -3.64 16 23 C 0.07 2.86 4.78 86.33 0.41 3.28 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.16 8.09 -2.39 -0.02 1.14 16 30 H 0.06 1.17 7.94 -2.39 -0.02 1.15 16 31 H 0.09 1.97 7.94 -2.39 -0.02 1.95 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.08 2.82 5.94 -2.39 -0.01 2.80 16 36 H 0.00 0.15 6.61 -2.38 -0.02 0.13 16 37 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 38 H 0.06 2.48 6.06 -2.39 -0.01 2.46 16 39 H 0.03 1.51 3.22 -2.39 -0.01 1.51 16 40 H 0.07 2.18 7.75 -2.39 -0.02 2.16 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.01 0.26 6.98 -2.38 -0.02 0.25 16 44 H 0.06 2.50 8.07 -2.39 -0.02 2.48 16 Total: -1.00 -67.12 327.37 1.92 -65.20 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.85 Total: 14.82 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 4.16 Total: -28.37 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -3.28 Total: -84.16 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -1.49 Total: -14.70 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.20 kcal Total: -67.12 1.92 -65.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042422237.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.599 kcal (2) G-P(sol) polarization free energy of solvation -67.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds