Wall clock time and date at job start Mon Mar 30 2020 07:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 O 1.42906 * 109.46752 * 179.97438 * 3 2 1 5 5 C 1.42898 * 113.99824 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.50004 * 329.91917 * 5 4 3 7 7 C 1.53114 * 109.50714 * 90.00010 * 5 4 3 8 8 C 1.53115 * 109.16256 * 177.59418 * 7 5 4 9 9 C 1.53027 * 109.27917 * 302.34798 * 8 7 5 10 10 N 1.46841 * 109.52481 * 59.18073 * 9 8 7 11 11 C 1.46909 * 111.00242 * 174.15952 * 10 9 8 12 12 C 1.52995 * 109.46995 * 293.95523 * 11 10 9 13 13 C 1.53003 * 109.46910 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47089 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00010 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00258 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99486 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00302 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46948 * 89.99850 * 18 16 14 20 20 H 1.48502 * 109.47041 * 209.99696 * 18 16 14 21 21 H 1.48496 * 109.46827 * 329.99829 * 18 16 14 22 22 C 1.46843 * 111.19625 * 298.25407 * 10 9 8 23 23 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 26 26 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 29 29 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 30 30 H 1.09005 * 109.52283 * 297.50359 * 7 5 4 31 31 H 1.09004 * 109.51865 * 57.68759 * 7 5 4 32 32 H 1.09002 * 109.50547 * 62.28900 * 8 7 5 33 33 H 1.09007 * 109.50131 * 182.40314 * 8 7 5 34 34 H 1.09005 * 109.46477 * 179.19626 * 9 8 7 35 35 H 1.08998 * 109.46323 * 299.15835 * 9 8 7 36 36 H 1.09007 * 109.46813 * 53.95456 * 11 10 9 37 37 H 1.08996 * 109.47118 * 173.94884 * 11 10 9 38 38 H 1.09004 * 109.46778 * 299.99602 * 12 11 10 39 39 H 1.08996 * 109.47709 * 59.99723 * 12 11 10 40 40 H 1.08991 * 109.47482 * 299.99865 * 13 12 11 41 41 H 1.09005 * 109.46572 * 60.00062 * 13 12 11 42 42 H 0.97005 * 119.99347 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.46773 * 301.72689 * 22 10 9 44 44 H 1.09003 * 109.46463 * 181.75922 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0501 2.7481 0.0012 6 1 3.3860 3.4423 -0.5139 7 6 4.2574 3.2148 1.4447 8 6 4.9351 4.5878 1.4366 9 6 6.2610 4.4923 0.6786 10 7 6.0089 4.0430 -0.6965 11 6 7.2420 4.0723 -1.4944 12 6 7.7054 5.5206 -1.6639 13 6 8.9900 5.5511 -2.4944 14 6 9.4461 6.9776 -2.6620 15 1 8.8768 7.7820 -2.2199 16 6 10.5900 7.2560 -3.3796 17 7 11.2834 6.2764 -3.9174 18 14 11.1557 9.0241 -3.5866 19 1 12.0659 9.3865 -2.4706 20 1 11.8752 9.1657 -4.8780 21 1 9.9759 9.9258 -3.5758 22 6 5.4017 2.7061 -0.7152 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6765 1.9563 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 3.2923 3.2878 1.9461 31 1 4.8894 2.4997 1.9714 32 1 4.2855 5.3113 0.9440 33 1 5.1240 4.9063 2.4618 34 1 6.7393 5.4716 0.6587 35 1 6.9153 3.7790 1.1797 36 1 8.0177 3.4998 -0.9857 37 1 7.0512 3.6348 -2.4743 38 1 6.9297 6.0930 -2.1727 39 1 7.8962 5.9581 -0.6841 40 1 9.7655 4.9788 -1.9854 41 1 8.7995 5.1134 -3.4744 42 1 12.0885 6.4722 -4.4220 43 1 6.0600 2.0010 -0.2077 44 1 5.2558 2.3879 -1.7475 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042422267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:12 Heat of formation + Delta-G solvation = -95.163859 kcal Electronic energy + Delta-G solvation = -19040.982901 eV Core-core repulsion = 16184.211841 eV Total energy + Delta-G solvation = -2856.771059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53032 -38.56500 -36.15695 -34.83960 -34.11901 -32.57285 -30.87812 -28.42883 -26.95751 -25.63665 -23.90953 -23.47629 -22.42765 -21.53892 -20.78811 -18.52793 -17.74789 -16.94262 -16.75994 -16.52583 -16.29116 -15.84919 -15.23198 -15.03034 -14.90498 -14.65788 -14.29260 -13.77501 -13.65101 -13.51269 -13.45203 -13.09697 -12.82008 -12.66967 -12.51933 -12.35600 -12.16285 -12.06256 -11.94856 -11.72933 -11.57631 -11.54753 -11.38692 -11.29421 -11.06310 -10.54550 -10.40217 -9.34129 -8.19797 -6.30834 1.40250 1.41917 1.53259 2.36288 2.43369 3.13288 3.18314 3.74773 3.81008 3.98107 4.04498 4.07921 4.17400 4.23561 4.29840 4.39807 4.46862 4.50675 4.54763 4.63940 4.68867 4.70958 4.73888 4.82807 4.89874 4.93995 4.98848 5.03653 5.09419 5.11496 5.16006 5.24570 5.27502 5.34697 5.38968 5.52398 5.74205 5.86029 6.03517 6.09008 6.27096 6.34434 6.86020 7.38325 8.92258 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.045025 B = 0.003070 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.734001 B = 9118.738320 C = 9415.562801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.057 3.943 4 O -0.402 6.402 5 C 0.100 3.900 6 H 0.071 0.929 7 C -0.135 4.135 8 C -0.106 4.106 9 C 0.044 3.956 10 N -0.538 5.538 11 C 0.069 3.931 12 C -0.087 4.087 13 C 0.025 3.975 14 C -0.541 4.541 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.263 1.263 22 C 0.060 3.940 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.029 0.971 36 H 0.024 0.976 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.053 0.947 40 H -0.011 1.011 41 H -0.009 1.009 42 H 0.263 0.737 43 H 0.031 0.969 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.543 -9.222 11.385 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.019 4.019 4 O -0.322 6.322 5 C 0.042 3.958 6 H 0.089 0.911 7 C -0.172 4.172 8 C -0.144 4.144 9 C -0.083 4.083 10 N -0.264 5.264 11 C -0.059 4.059 12 C -0.125 4.125 13 C -0.013 4.013 14 C -0.579 4.579 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.068 4.068 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.008 0.992 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.641 -9.120 11.079 25.139 hybrid contribution 1.316 0.246 -0.131 1.345 sum -19.326 -8.874 10.947 23.918 Atomic orbital electron populations 1.21681 0.93327 1.02872 1.02487 1.21476 0.96864 0.94876 1.02805 1.22759 0.79801 0.98612 1.00741 1.87834 1.21015 1.28082 1.95219 1.21950 0.93804 0.84190 0.95897 0.91144 1.22039 1.01765 0.97147 0.96298 1.21516 0.95303 0.96928 1.00672 1.22276 0.97947 1.00540 0.87562 1.61857 1.26770 1.24885 1.12874 1.22018 0.89285 0.97457 0.97139 1.21386 0.96874 0.94779 0.99448 1.18979 0.92664 0.95606 0.94014 1.21685 1.09313 0.93959 1.32963 0.92161 1.26016 0.96785 1.02035 0.95206 1.70109 1.17453 1.33777 1.36155 0.85423 0.78574 0.79286 0.77630 1.19706 1.20722 1.18690 1.21985 0.94845 0.89236 1.00756 0.91284 0.91907 0.92228 0.91879 0.91513 0.93016 0.92406 0.90127 0.91981 0.90877 0.89263 0.90595 0.95280 0.95773 0.91397 0.92797 0.92882 0.99227 0.99020 0.92784 0.95053 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.80 6.30 30.60 0.19 -1.61 16 3 C 0.06 0.98 5.75 71.98 0.41 1.40 16 4 O -0.40 -9.36 9.99 -148.98 -1.49 -10.85 16 5 C 0.10 2.30 2.77 30.65 0.08 2.38 16 6 H 0.07 1.59 7.79 -2.38 -0.02 1.58 16 7 C -0.13 -2.69 5.62 30.67 0.17 -2.51 16 8 C -0.11 -2.20 6.09 30.64 0.19 -2.01 16 9 C 0.04 1.21 5.29 86.32 0.46 1.66 16 10 N -0.54 -16.49 4.65 -896.39 -4.17 -20.66 16 11 C 0.07 2.50 4.96 86.30 0.43 2.92 16 12 C -0.09 -3.71 5.09 30.59 0.16 -3.56 16 13 C 0.03 1.36 4.97 29.85 0.15 1.50 16 14 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 16 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 17 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 18 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 C 0.06 1.65 5.11 86.33 0.44 2.09 16 23 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 0.85 8.09 -2.39 -0.02 0.83 16 29 H 0.06 0.86 7.93 -2.39 -0.02 0.84 16 30 H 0.08 1.32 7.93 -2.38 -0.02 1.30 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.08 2.21 6.22 -2.38 -0.01 2.19 16 35 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.02 0.90 8.12 -2.38 -0.02 0.88 16 37 H 0.07 2.49 7.98 -2.39 -0.02 2.47 16 38 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.05 2.19 6.44 -2.39 -0.02 2.18 16 40 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 42 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 43 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 2.08 8.01 -2.39 -0.02 2.06 16 Total: -1.00 -64.88 345.66 1.65 -63.22 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.91 Total: 8.50 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 4.09 Total: -29.50 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -3.89 Total: -78.26 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.49 Total: -10.85 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -64.88 1.65 -63.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042422267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.939 kcal (2) G-P(sol) polarization free energy of solvation -64.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds