Wall clock time and date at job start Mon Mar 30 2020 07:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47221 * 2 1 4 4 C 1.53004 * 109.47417 * 120.00302 * 2 1 3 5 5 C 1.52992 * 109.47137 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47515 * 300.00228 * 5 4 2 7 7 C 1.53004 * 109.47105 * 59.99752 * 6 5 4 8 8 C 1.52998 * 109.46924 * 60.00298 * 7 6 5 9 9 O 1.42904 * 109.47209 * 65.33675 * 8 7 6 10 10 N 1.46902 * 109.46987 * 180.02562 * 7 6 5 11 11 C 1.46898 * 110.99934 * 180.68876 * 10 7 6 12 12 C 1.52997 * 109.46982 * 179.45067 * 11 10 7 13 13 C 1.53001 * 109.46960 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47028 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99760 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99857 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00249 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99994 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47162 * 59.99585 * 18 16 14 20 20 H 1.48501 * 109.47249 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46868 * 299.99702 * 18 16 14 22 22 C 1.53002 * 109.46935 * 300.00131 * 7 6 5 23 23 H 1.08999 * 109.47221 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46639 * 299.99604 * 1 2 3 25 25 H 1.09000 * 109.47592 * 59.99410 * 1 2 3 26 26 H 1.08994 * 109.47026 * 300.00084 * 4 2 1 27 27 H 1.09006 * 109.46565 * 59.99900 * 4 2 1 28 28 H 1.09003 * 109.47414 * 60.00248 * 5 4 2 29 29 H 1.09002 * 109.47010 * 179.97438 * 5 4 2 30 30 H 1.08999 * 109.46805 * 299.99897 * 6 5 4 31 31 H 1.08998 * 109.47589 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47069 * 185.33781 * 8 7 6 33 33 H 1.09001 * 109.47561 * 305.33988 * 8 7 6 34 34 H 0.96693 * 113.99882 * 179.97438 * 9 8 7 35 35 H 1.00901 * 111.00225 * 304.64265 * 10 7 6 36 36 H 1.08998 * 109.47067 * 59.44811 * 11 10 7 37 37 H 1.09004 * 109.46829 * 299.44623 * 11 10 7 38 38 H 1.08998 * 109.47429 * 59.99965 * 12 11 10 39 39 H 1.09004 * 109.46976 * 299.99465 * 12 11 10 40 40 H 1.08998 * 109.47407 * 59.99549 * 13 12 11 41 41 H 1.09004 * 109.46511 * 299.99347 * 13 12 11 42 42 H 0.96998 * 120.00138 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.46420 * 179.97438 * 22 7 6 44 44 H 1.08999 * 109.47385 * 300.00106 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4433 -0.0005 7 6 3.5694 -0.7220 -1.2497 8 6 4.0799 0.7203 -1.2499 9 8 5.5034 0.7218 -1.3755 10 7 4.0582 -1.4151 -2.4492 11 6 3.6006 -0.7395 -3.6707 12 6 4.1396 -1.4807 -4.8958 13 6 3.6635 -0.7767 -6.1681 14 6 4.1950 -1.5064 -7.3748 15 1 4.8110 -2.3842 -7.2470 16 6 3.8947 -1.0533 -8.6420 17 7 3.1441 0.0153 -8.7976 18 14 4.5540 -1.9574 -10.1377 19 1 4.0564 -3.3565 -10.1296 20 1 4.0908 -1.2749 -11.3726 21 1 6.0385 -1.9597 -10.1000 22 6 2.0394 -0.7216 -1.2493 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6767 -0.2076 2.1392 27 1 1.6767 -1.7490 1.2491 28 1 3.9337 0.3057 1.2487 29 1 3.9333 -1.2353 2.1390 30 1 3.7159 -2.4709 -0.0003 31 1 5.1695 -1.4433 -0.0010 32 1 3.6406 1.2611 -2.0882 33 1 3.7972 1.2060 -0.3159 34 1 5.8966 1.6051 -1.3832 35 1 5.0639 -1.4958 -2.4357 36 1 3.9667 0.2871 -3.6770 37 1 2.5109 -0.7370 -3.6980 38 1 3.7735 -2.5074 -4.8896 39 1 5.2293 -1.4833 -4.8686 40 1 4.0299 0.2498 -6.1741 41 1 2.5738 -0.7738 -6.1955 42 1 2.9325 0.3338 -9.6890 43 1 1.6761 -0.2073 -2.1390 44 1 1.6758 -1.7491 -1.2491 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053119022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:44 Heat of formation + Delta-G solvation = -109.265905 kcal Electronic energy + Delta-G solvation = -19932.857810 eV Core-core repulsion = 17075.475240 eV Total energy + Delta-G solvation = -2857.382570 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07868 -37.47141 -36.84709 -35.29343 -33.64146 -32.76755 -30.31982 -27.88300 -27.18219 -26.84071 -24.62040 -22.81646 -21.77710 -21.51705 -19.50603 -18.50255 -18.26605 -16.94530 -16.66068 -16.48213 -15.88834 -15.69924 -15.32804 -15.19279 -14.62837 -14.35880 -14.01474 -13.82137 -13.49685 -13.41835 -13.18148 -13.08427 -12.75397 -12.73784 -12.49993 -12.37077 -12.20313 -12.01638 -11.78884 -11.58764 -11.47572 -11.40624 -11.23477 -10.99864 -10.79967 -10.71936 -10.55731 -9.28308 -8.20750 -6.32140 1.39157 1.42852 1.50793 2.40662 3.03447 3.11968 3.44351 3.77461 3.78697 4.03159 4.09928 4.20595 4.23986 4.27941 4.39207 4.48433 4.50761 4.58728 4.65054 4.66692 4.74976 4.80796 4.90012 4.97866 5.02183 5.09022 5.11852 5.17147 5.19857 5.24353 5.35662 5.38149 5.40971 5.44911 5.51262 5.60449 5.73449 5.83999 6.15632 6.28687 6.51635 6.81855 6.83975 7.36970 8.91082 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.032382 B = 0.004020 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.475749 B = 6963.687882 C = 7321.895044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.098 4.098 7 C 0.117 3.883 8 C 0.046 3.954 9 O -0.583 6.583 10 N -0.677 5.677 11 C 0.075 3.925 12 C -0.092 4.092 13 C 0.029 3.971 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.267 1.267 22 C -0.100 4.100 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.393 0.607 35 H 0.343 0.657 36 H 0.019 0.981 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.044 0.956 40 H -0.011 1.011 41 H -0.009 1.009 42 H 0.264 0.736 43 H 0.048 0.952 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.239 1.617 22.703 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.136 4.136 7 C 0.026 3.974 8 C -0.033 4.033 9 O -0.391 6.391 10 N -0.307 5.307 11 C -0.055 4.055 12 C -0.130 4.130 13 C -0.009 4.009 14 C -0.584 4.584 15 H 0.076 0.924 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.192 1.192 22 C -0.138 4.138 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.242 0.758 35 H 0.161 0.839 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.007 0.993 41 H 0.009 0.991 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.921 0.613 22.558 22.647 hybrid contribution 0.817 1.256 -1.334 2.006 sum -1.104 1.869 21.223 21.334 Atomic orbital electron populations 1.21812 0.94470 1.02058 1.01983 1.21181 0.96127 0.99386 0.94227 0.91080 1.21602 0.95077 1.00881 0.97219 1.21558 0.95867 1.00767 0.97006 1.21428 1.00206 0.99193 0.92748 1.21061 0.95023 0.90300 0.90986 1.23023 0.81341 0.98854 1.00072 1.86373 1.20255 1.35341 1.97127 1.60686 1.17084 1.52168 1.00777 1.21813 0.99418 0.94903 0.89321 1.21366 0.99153 0.99001 0.93436 1.18936 0.94734 0.94551 0.92677 1.21667 1.31833 1.12541 0.92330 0.92379 1.25995 0.95305 0.95898 1.02573 1.70091 1.38706 1.25004 1.23559 0.85483 0.78991 0.78760 0.77710 1.19166 1.20582 1.19162 1.21635 0.92718 1.01379 0.98087 0.92639 0.91245 0.93355 0.90414 0.91893 0.91704 0.90594 0.91846 0.92315 0.95160 0.91052 0.75777 0.83867 0.96274 0.92034 0.93073 0.93672 0.99312 0.99072 0.92717 0.93298 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.19 71.98 0.66 -1.73 16 2 C -0.09 -1.61 2.45 -10.79 -0.03 -1.64 16 3 H 0.07 1.23 6.55 -2.39 -0.02 1.22 16 4 C -0.11 -1.67 5.20 30.59 0.16 -1.51 16 5 C -0.11 -1.84 5.65 30.59 0.17 -1.67 16 6 C -0.10 -2.12 4.88 30.60 0.15 -1.97 16 7 C 0.12 2.96 0.53 3.53 0.00 2.96 16 8 C 0.05 1.09 4.65 71.98 0.33 1.42 16 9 O -0.58 -13.85 12.53 -148.98 -1.87 -15.71 16 10 N -0.68 -21.41 6.04 -470.18 -2.84 -24.25 16 11 C 0.07 2.79 4.90 86.30 0.42 3.21 16 12 C -0.09 -4.10 5.41 30.59 0.17 -3.93 16 13 C 0.03 1.59 4.97 29.85 0.15 1.74 16 14 C -0.55 -32.47 9.11 25.60 0.23 -32.24 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 16 C 0.00 0.00 5.46 84.66 0.46 0.46 16 17 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 18 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 C -0.10 -2.41 3.79 30.60 0.12 -2.30 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.06 1.02 6.31 -2.39 -0.02 1.00 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.37 7.83 -2.39 -0.02 1.35 16 32 H 0.03 0.81 6.68 -2.39 -0.02 0.79 16 33 H 0.07 1.35 4.83 -2.39 -0.01 1.34 16 34 H 0.39 6.12 9.12 -74.06 -0.68 5.45 16 35 H 0.34 11.08 8.12 -89.69 -0.73 10.36 16 36 H 0.02 0.74 6.38 -2.39 -0.02 0.72 16 37 H 0.06 2.35 6.35 -2.39 -0.02 2.34 16 38 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 40 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 41 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.05 1.34 6.43 -2.39 -0.02 1.33 16 44 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -67.03 331.29 0.17 -66.86 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.43 Total: 20.77 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 3.00 Total: -37.20 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -2.56 Total: -82.14 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.87 Total: -15.71 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -67.03 0.17 -66.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053119022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.405 kcal (2) G-P(sol) polarization free energy of solvation -67.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds