Wall clock time and date at job start Mon Mar 30 2020 06:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47152 * 2 1 4 4 H 1.09004 * 109.47259 * 304.53833 * 3 2 1 5 5 C 1.50710 * 109.47194 * 184.54184 * 3 2 1 6 6 H 1.07995 * 119.99777 * 242.75436 * 5 3 2 7 7 C 1.37872 * 119.99827 * 62.74580 * 5 3 2 8 8 N 1.31513 * 120.00309 * 195.77470 * 7 5 3 9 9 Si 1.86800 * 119.99929 * 15.78583 * 7 5 3 10 10 H 1.48500 * 109.47347 * 90.93640 * 9 7 5 11 11 H 1.48508 * 109.47141 * 210.93397 * 9 7 5 12 12 H 1.48498 * 109.47058 * 330.93363 * 9 7 5 13 13 N 1.46904 * 109.47351 * 64.54133 * 3 2 1 14 14 C 1.46901 * 110.99755 * 204.09880 * 13 3 2 15 15 H 1.09003 * 109.54581 * 325.40745 * 14 13 3 16 16 C 1.53173 * 109.54255 * 85.58578 * 14 13 3 17 17 C 1.53100 * 109.16414 * 176.84422 * 16 14 13 18 18 O 1.42904 * 109.41534 * 302.39482 * 17 16 14 19 19 C 1.42901 * 114.09665 * 61.15293 * 18 17 16 20 20 C 1.52998 * 109.47820 * 58.84175 * 19 18 17 21 21 C 1.53008 * 109.47565 * 178.86097 * 19 18 17 22 22 C 1.53000 * 109.46922 * 300.00097 * 21 19 18 23 23 C 1.53088 * 109.41803 * 298.84267 * 19 18 17 24 24 H 1.08999 * 109.47355 * 304.38203 * 1 2 3 25 25 H 1.09000 * 109.47228 * 64.37610 * 1 2 3 26 26 H 1.08994 * 109.47361 * 184.38153 * 1 2 3 27 27 H 1.08998 * 109.46940 * 239.99373 * 2 1 3 28 28 H 1.09004 * 109.46377 * 119.99582 * 2 1 3 29 29 H 0.96997 * 120.00743 * 180.02562 * 8 7 5 30 30 H 1.00898 * 110.99932 * 80.14944 * 13 3 2 31 31 H 1.08995 * 109.52404 * 56.93929 * 16 14 13 32 32 H 1.08996 * 109.57780 * 296.78063 * 16 14 13 33 33 H 1.08996 * 109.48352 * 182.40343 * 17 16 14 34 34 H 1.08999 * 109.48879 * 62.38054 * 17 16 14 35 35 H 1.09007 * 109.46773 * 180.02562 * 20 19 18 36 36 H 1.08998 * 109.47094 * 300.01653 * 20 19 18 37 37 H 1.08992 * 109.47535 * 60.02118 * 20 19 18 38 38 H 1.09005 * 109.46811 * 180.02562 * 21 19 18 39 39 H 1.08998 * 109.47013 * 60.00214 * 21 19 18 40 40 H 1.09003 * 109.46783 * 180.02562 * 22 21 19 41 41 H 1.08998 * 109.47373 * 299.99897 * 22 21 19 42 42 H 1.08993 * 109.47063 * 60.00121 * 22 21 19 43 43 H 1.08999 * 109.52177 * 177.51576 * 23 19 18 44 44 H 1.09006 * 109.52466 * 297.70581 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6118 1.9792 -0.8466 5 6 3.5429 1.4439 -0.1125 6 1 4.1438 1.8505 0.6874 7 6 4.1505 0.9260 -1.2365 8 7 5.4338 0.6390 -1.2172 9 14 3.1510 0.6322 -2.7871 10 1 3.2016 1.8429 -3.6455 11 1 3.7157 -0.5241 -3.5284 12 1 1.7412 0.3441 -2.4201 13 7 1.6419 2.1026 1.2505 14 6 1.5852 3.5607 1.0811 15 1 2.3642 3.8778 0.3877 16 6 0.2136 3.9592 0.5279 17 6 0.1356 5.4850 0.4290 18 8 0.3697 6.0572 1.7174 19 6 1.6556 5.7574 2.2639 20 6 2.7439 6.2652 1.3160 21 6 1.8038 6.4417 3.6244 22 6 1.6634 7.9555 3.4517 23 6 1.7946 4.2426 2.4366 24 1 -0.3634 0.5803 0.8481 25 1 -0.3634 0.4444 -0.9266 26 1 -0.3634 -1.0246 0.0785 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 5.8614 0.2750 -2.0081 30 1 2.2616 1.8502 2.0058 31 1 -0.5678 3.5972 1.1959 32 1 0.0779 3.5227 -0.4616 33 1 -0.8537 5.7764 0.0761 34 1 0.8909 5.8432 -0.2705 35 1 3.7247 6.0360 1.7329 36 1 2.6381 5.7776 0.3469 37 1 2.6443 7.3435 1.1929 38 1 2.7849 6.2133 4.0410 39 1 1.0286 6.0796 4.2996 40 1 1.7695 8.4430 4.4208 41 1 2.4386 8.3176 2.7764 42 1 0.6826 8.1842 3.0349 43 1 2.7908 4.0087 2.8120 44 1 1.0451 3.8862 3.1433 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069891005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:29 Heat of formation + Delta-G solvation = -84.288675 kcal Electronic energy + Delta-G solvation = -20719.391641 eV Core-core repulsion = 17863.092165 eV Total energy + Delta-G solvation = -2856.299476 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.11326 -38.16909 -35.38176 -35.04608 -33.89128 -31.35495 -30.89014 -29.15610 -28.05176 -25.14747 -24.56335 -24.09037 -21.70280 -21.25915 -20.05423 -19.05998 -17.27404 -17.04571 -16.78813 -16.22833 -15.67622 -15.46528 -15.36179 -14.86074 -14.69800 -14.37523 -14.29266 -13.84543 -13.39763 -13.32730 -13.27215 -13.02652 -12.86871 -12.67310 -12.59455 -12.40069 -12.25834 -12.07403 -12.00504 -11.60825 -11.56418 -11.46205 -11.30396 -11.19982 -10.76751 -10.62470 -10.35023 -9.05391 -8.35801 -6.34990 1.29762 1.34524 1.44285 2.31463 2.85543 2.99738 3.42068 3.74496 3.89612 3.98405 4.16037 4.24635 4.35701 4.44170 4.46371 4.50838 4.55659 4.58092 4.64919 4.70321 4.73332 4.82554 4.85538 4.96480 5.02693 5.04470 5.09011 5.14952 5.17730 5.23350 5.25231 5.29630 5.36571 5.47528 5.52281 5.54753 5.59080 5.72093 6.11824 6.36876 6.43704 6.65767 6.81862 7.32342 8.80608 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025307 B = 0.006271 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.156241 B = 4463.754997 C = 4838.015360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C 0.197 3.803 4 H 0.022 0.978 5 C -0.549 4.549 6 H 0.030 0.970 7 C 0.023 3.977 8 N -0.940 5.940 9 Si 0.921 3.079 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.222 1.222 13 N -0.666 5.666 14 C 0.088 3.912 15 H 0.023 0.977 16 C -0.134 4.134 17 C 0.061 3.939 18 O -0.378 6.378 19 C 0.120 3.880 20 C -0.180 4.180 21 C -0.106 4.106 22 C -0.145 4.145 23 C -0.134 4.134 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.264 0.736 30 H 0.330 0.670 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.124 10.664 5.737 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.151 4.151 3 C 0.087 3.913 4 H 0.040 0.960 5 C -0.588 4.588 6 H 0.048 0.952 7 C -0.175 4.175 8 N -0.579 5.579 9 Si 0.745 3.255 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.144 1.144 13 N -0.295 5.295 14 C -0.022 4.022 15 H 0.041 0.959 16 C -0.172 4.172 17 C -0.016 4.016 18 O -0.297 6.297 19 C 0.081 3.919 20 C -0.237 4.237 21 C -0.143 4.143 22 C -0.203 4.203 23 C -0.172 4.172 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.147 0.853 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.801 10.608 5.633 16.838 hybrid contribution 1.748 -0.503 -1.201 2.180 sum -10.053 10.104 4.433 14.927 Atomic orbital electron populations 1.21633 0.94967 1.00922 1.01496 1.21773 0.96014 0.97541 0.99749 1.19337 0.90785 0.91985 0.89240 0.95963 1.21991 0.92837 1.40217 1.03709 0.95193 1.25764 0.95605 0.94074 1.02105 1.70131 1.13131 1.44372 1.30279 0.86301 0.82110 0.77675 0.79449 1.20606 1.21361 1.14448 1.60851 1.55219 1.06397 1.07001 1.21456 0.96177 0.88442 0.96128 0.95867 1.22132 0.97269 0.96435 1.01393 1.22652 1.02241 0.91656 0.85077 1.87887 1.34127 1.73894 1.33803 1.21486 0.83302 0.92590 0.94551 1.22482 0.99135 1.02254 0.99818 1.21518 1.02693 0.96494 0.93638 1.21717 1.02049 0.94510 1.01980 1.22288 1.02091 0.95710 0.97139 0.91509 0.94070 0.92830 0.94270 0.93669 0.92695 0.85338 0.90741 0.92148 0.86936 0.93431 0.91786 0.93402 0.90462 0.90074 0.91094 0.91587 0.92569 0.92702 0.91938 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.85 71.98 0.71 -3.81 16 2 C -0.11 -4.73 4.87 30.59 0.15 -4.58 16 3 C 0.20 8.88 1.35 44.17 0.06 8.94 16 4 H 0.02 1.04 5.99 -2.39 -0.01 1.03 16 5 C -0.55 -30.41 8.69 25.60 0.22 -30.19 16 6 H 0.03 1.85 7.98 -2.91 -0.02 1.82 16 7 C 0.02 1.34 5.32 84.65 0.45 1.79 16 8 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 9 Si 0.92 43.21 25.78 68.60 1.77 44.98 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.22 -9.44 5.40 99.48 0.54 -8.90 16 13 N -0.67 -26.05 5.41 -472.69 -2.56 -28.60 16 14 C 0.09 3.10 2.07 45.03 0.09 3.19 16 15 H 0.02 0.97 6.09 -2.39 -0.01 0.95 16 16 C -0.13 -4.07 5.62 30.69 0.17 -3.90 16 17 C 0.06 1.58 6.52 72.02 0.47 2.05 16 18 O -0.38 -10.27 9.56 -148.98 -1.42 -11.69 16 19 C 0.12 3.16 0.79 -10.76 -0.01 3.15 16 20 C -0.18 -4.82 7.58 71.98 0.55 -4.27 16 21 C -0.11 -2.27 5.20 30.60 0.16 -2.11 16 22 C -0.15 -2.73 9.42 71.98 0.68 -2.05 16 23 C -0.13 -4.01 4.19 30.68 0.13 -3.88 16 24 H 0.07 2.21 7.62 -2.39 -0.02 2.19 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.73 4.69 -2.39 -0.01 1.72 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.33 13.37 8.06 -89.70 -0.72 12.65 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.06 1.92 7.51 -2.39 -0.02 1.90 16 33 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.05 1.27 6.34 -2.39 -0.02 1.25 16 35 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.05 1.45 4.98 -2.39 -0.01 1.44 16 37 H 0.08 1.80 6.43 -2.39 -0.02 1.79 16 38 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.03 6.43 -2.39 -0.02 1.02 16 42 H 0.05 1.11 7.68 -2.39 -0.02 1.10 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -61.93 323.47 1.98 -59.95 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.07 Total: 28.82 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 3.83 Total: -35.66 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -2.26 Total: -86.39 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.42 Total: -11.69 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.77 Total: 44.98 kcal Total: -61.93 1.98 -59.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069891005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.336 kcal (2) G-P(sol) polarization free energy of solvation -61.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds