Wall clock time and date at job start Mon Mar 30 2020 07:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99368 * 2 1 4 4 H 1.08993 * 109.47158 * 329.99282 * 3 2 1 5 5 C 1.52997 * 109.47174 * 90.00323 * 3 2 1 6 6 C 1.52999 * 109.47515 * 59.99603 * 5 3 2 7 7 C 1.52995 * 109.47308 * 59.99834 * 6 5 3 8 8 C 1.53001 * 109.47318 * 300.00488 * 7 6 5 9 9 H 1.09004 * 109.46601 * 299.99673 * 8 7 6 10 10 N 1.46900 * 109.47229 * 179.97438 * 8 7 6 11 11 C 1.46894 * 110.99846 * 299.83536 * 10 8 7 12 12 C 1.50708 * 109.47017 * 188.95847 * 11 10 8 13 13 H 1.08000 * 119.99444 * 4.71808 * 12 11 10 14 14 C 1.37876 * 119.99941 * 184.72917 * 12 11 10 15 15 N 1.31509 * 119.99898 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99981 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46757 * 90.00794 * 16 14 12 18 18 H 1.48501 * 109.47185 * 209.99983 * 16 14 12 19 19 H 1.48492 * 109.47190 * 330.00583 * 16 14 12 20 20 C 1.46900 * 111.00033 * 63.78879 * 10 8 7 21 21 C 1.53004 * 109.47077 * 272.18900 * 20 10 8 22 22 C 1.53000 * 109.47253 * 32.18511 * 20 10 8 23 23 C 1.52999 * 109.47329 * 59.99525 * 8 7 6 24 24 H 1.09000 * 109.47805 * 299.99834 * 1 2 3 25 25 H 1.09004 * 109.47246 * 60.00442 * 1 2 3 26 26 H 1.09002 * 109.47190 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46880 * 299.99564 * 5 3 2 28 28 H 1.09001 * 109.47017 * 180.02562 * 5 3 2 29 29 H 1.09005 * 109.46526 * 300.00236 * 6 5 3 30 30 H 1.08995 * 109.47280 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.47470 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47017 * 59.99906 * 7 6 5 33 33 H 1.09000 * 109.46893 * 308.95226 * 11 10 8 34 34 H 1.08991 * 109.47461 * 68.95600 * 11 10 8 35 35 H 0.97001 * 120.00238 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47432 * 152.18461 * 20 10 8 37 37 H 1.09000 * 109.47198 * 162.74370 * 21 20 10 38 38 H 1.09010 * 109.46445 * 282.73921 * 21 20 10 39 39 H 1.09002 * 109.47210 * 42.73454 * 21 20 10 40 40 H 1.09001 * 109.47172 * 294.46984 * 22 20 10 41 41 H 1.08999 * 109.47268 * 54.46233 * 22 20 10 42 42 H 1.09001 * 109.47409 * 174.46690 * 22 20 10 43 43 H 1.08998 * 109.46759 * 60.00369 * 23 8 7 44 44 H 1.08995 * 109.47280 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3448 1.9993 -0.5139 5 6 2.2175 1.7715 1.4425 6 6 3.1514 0.7976 2.1638 7 6 4.5000 0.7553 1.4426 8 6 4.2926 0.2894 0.0000 9 1 3.8493 -0.7064 0.0001 10 7 5.5875 0.2495 -0.6926 11 6 6.2134 1.5782 -0.7156 12 6 7.4218 1.5488 -1.6156 13 1 7.6537 0.6572 -2.1792 14 6 8.2315 2.6600 -1.7192 15 7 9.2863 2.6341 -2.5041 16 14 7.8301 4.2022 -0.7445 17 1 8.5040 4.1416 0.5774 18 1 8.3063 5.3959 -1.4885 19 1 6.3612 4.2950 -0.5476 20 6 6.4813 -0.7429 -0.0810 21 6 7.2618 -0.0905 1.0619 22 6 5.6527 -1.9067 0.4666 23 6 3.3588 1.2634 -0.7213 24 1 -0.3635 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.2567 1.8015 1.9563 28 1 2.6603 2.7675 1.4424 29 1 2.7080 -0.1982 2.1637 30 1 3.2988 1.1293 3.1915 31 1 5.1652 0.0612 1.9561 32 1 4.9433 1.7512 1.4425 33 1 5.4984 2.3102 -1.0913 34 1 6.5187 1.8536 0.2938 35 1 9.8557 3.4159 -2.5773 36 1 7.1789 -1.1151 -0.8313 37 1 7.6829 -0.8651 1.7029 38 1 8.0671 0.5184 0.6507 39 1 6.5915 0.5400 1.6462 40 1 5.0253 -1.5528 1.2847 41 1 5.0225 -2.3089 -0.3266 42 1 6.3197 -2.6876 0.8318 43 1 3.8021 2.2591 -0.7213 44 1 3.2107 0.9312 -1.7487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070329032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:50 Heat of formation + Delta-G solvation = -36.288648 kcal Electronic energy + Delta-G solvation = -21187.913455 eV Core-core repulsion = 18333.695416 eV Total energy + Delta-G solvation = -2854.218039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.94930 -37.84320 -34.83095 -32.64059 -31.36795 -29.78780 -29.31621 -26.99728 -26.39037 -25.96847 -22.37584 -22.00303 -21.69447 -19.50962 -18.27951 -16.69084 -16.03722 -15.67502 -15.60259 -15.20128 -14.33396 -14.13930 -13.89889 -13.69089 -13.20678 -13.16263 -12.58921 -12.45718 -12.19245 -12.01063 -11.84354 -11.38261 -11.28930 -11.24330 -11.11115 -10.91403 -10.75067 -10.65580 -10.55606 -10.20927 -10.09225 -9.78510 -9.68758 -9.43187 -9.33988 -9.00612 -8.50923 -7.10509 -5.99766 -3.94666 3.28839 3.37247 3.38503 3.87873 4.45481 4.72230 4.91240 4.98190 5.17897 5.26259 5.30116 5.32599 5.50151 5.53226 5.59170 5.60642 5.68791 5.73144 5.76422 5.84396 5.97515 5.98612 6.09791 6.16693 6.21374 6.30227 6.36366 6.37500 6.43564 6.48822 6.59791 6.71029 6.81268 6.92686 7.00366 7.14062 7.25649 7.31577 7.73581 8.08003 8.25028 8.77372 9.11761 9.63449 11.13847 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022906 B = 0.007280 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.103178 B = 3845.091117 C = 4314.245056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.092 3.908 4 H 0.056 0.944 5 C -0.140 4.140 6 C -0.108 4.108 7 C -0.166 4.166 8 C 0.087 3.913 9 H 0.087 0.913 10 N -0.518 5.518 11 C 0.153 3.847 12 C -0.499 4.499 13 H 0.079 0.921 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.869 3.131 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.268 1.268 20 C 0.094 3.906 21 C -0.191 4.191 22 C -0.158 4.158 23 C -0.111 4.111 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.026 0.974 34 H -0.004 1.004 35 H 0.262 0.738 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.164 -3.885 8.856 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.033 3.967 4 H 0.074 0.926 5 C -0.178 4.178 6 C -0.146 4.146 7 C -0.204 4.204 8 C -0.022 4.022 9 H 0.105 0.895 10 N -0.241 5.241 11 C 0.027 3.973 12 C -0.538 4.538 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.697 3.303 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.193 1.193 20 C -0.014 4.014 21 C -0.250 4.250 22 C -0.215 4.215 23 C -0.148 4.148 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.013 0.987 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.969 -4.087 8.276 17.586 hybrid contribution -0.127 1.549 1.354 2.061 sum -15.096 -2.539 9.630 18.085 Atomic orbital electron populations 1.22729 0.82200 1.02238 0.99448 1.87969 1.18563 1.28019 1.94958 1.22189 0.95134 0.84168 0.95160 0.92566 1.22017 0.99592 0.99757 0.96420 1.21371 0.95754 0.99643 0.97873 1.22727 0.96865 1.02292 0.98553 1.21689 0.91434 0.99179 0.89883 0.89479 1.62464 1.02154 1.08649 1.50813 1.20333 0.95031 0.86370 0.95555 1.21052 1.06846 1.00893 1.24970 0.90336 1.24882 0.94950 0.98169 0.95348 1.69894 1.15591 1.29972 1.38782 0.86949 0.79096 0.83799 0.80449 1.20435 1.21331 1.19286 1.21412 0.93820 0.91507 0.94699 1.22794 1.02245 1.00950 0.98964 1.22242 1.00154 0.98231 1.00905 1.21767 0.92404 1.00914 0.99730 0.94608 0.94381 0.90062 0.92532 0.91293 0.91593 0.92984 0.90384 0.91952 0.95595 0.98662 0.92844 0.90194 0.94244 0.90501 0.92007 0.92461 0.92394 0.93309 0.90340 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.40 16 2 O -0.38 -5.10 9.00 -35.23 -0.32 -5.42 16 3 C 0.09 1.23 2.92 -26.73 -0.08 1.16 16 4 H 0.06 0.68 7.79 -51.93 -0.40 0.28 16 5 C -0.14 -1.76 5.63 -26.73 -0.15 -1.91 16 6 C -0.11 -1.44 5.78 -26.73 -0.15 -1.60 16 7 C -0.17 -2.63 3.04 -26.73 -0.08 -2.71 16 8 C 0.09 1.51 1.57 -67.71 -0.11 1.40 16 9 H 0.09 1.50 5.53 -51.93 -0.29 1.22 16 10 N -0.52 -10.74 4.73 -220.15 -1.04 -11.78 16 11 C 0.15 3.62 2.46 -4.98 -0.01 3.61 16 12 C -0.50 -13.99 8.25 -34.44 -0.28 -14.27 16 13 H 0.08 2.43 7.65 -52.49 -0.40 2.03 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 16 Si 0.87 21.50 27.38 -169.99 -4.65 16.85 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.27 -6.35 6.68 56.52 0.38 -5.97 16 20 C 0.09 1.81 2.80 -67.71 -0.19 1.62 16 21 C -0.19 -3.64 7.32 37.16 0.27 -3.37 16 22 C -0.16 -2.48 7.76 37.16 0.29 -2.19 16 23 C -0.11 -1.82 4.73 -26.73 -0.13 -1.95 16 24 H 0.04 0.31 7.87 -51.93 -0.41 -0.09 16 25 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.24 3.96 -51.93 -0.21 1.03 16 32 H 0.06 1.10 6.46 -51.93 -0.34 0.76 16 33 H 0.03 0.63 5.25 -51.93 -0.27 0.36 16 34 H 0.00 -0.10 3.90 -51.93 -0.20 -0.30 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.08 1.72 7.74 -51.93 -0.40 1.31 16 37 H 0.04 0.65 8.02 -51.93 -0.42 0.23 16 38 H 0.08 1.71 6.75 -51.92 -0.35 1.36 16 39 H 0.06 1.13 3.74 -51.93 -0.19 0.94 16 40 H 0.06 0.85 5.03 -51.93 -0.26 0.59 16 41 H 0.06 0.91 7.69 -51.93 -0.40 0.51 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.38 6.21 -51.93 -0.32 1.06 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 310.76 15.07 4.68 4.68 Total: -1.00 -29.85 310.76 -7.55 -37.40 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.36 Total: 2.13 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 0.37 Total: -16.97 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.27 Total: -38.68 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.32 Total: -5.42 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.65 Total: 16.85 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.85 -7.55 -37.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070329032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.108 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds