Wall clock time and date at job start Mon Mar 30 2020 07:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99368 * 2 1 4 4 H 1.08993 * 109.47158 * 329.99282 * 3 2 1 5 5 C 1.52997 * 109.47174 * 90.00323 * 3 2 1 6 6 C 1.52999 * 109.47515 * 59.99603 * 5 3 2 7 7 C 1.52995 * 109.47308 * 59.99834 * 6 5 3 8 8 C 1.53001 * 109.47318 * 300.00488 * 7 6 5 9 9 H 1.09004 * 109.46601 * 299.99673 * 8 7 6 10 10 N 1.46900 * 109.47229 * 179.97438 * 8 7 6 11 11 C 1.46894 * 110.99846 * 299.83536 * 10 8 7 12 12 C 1.50708 * 109.47017 * 188.95847 * 11 10 8 13 13 H 1.08000 * 119.99444 * 4.71808 * 12 11 10 14 14 C 1.37876 * 119.99941 * 184.72917 * 12 11 10 15 15 N 1.31509 * 119.99898 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99981 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46757 * 90.00794 * 16 14 12 18 18 H 1.48501 * 109.47185 * 209.99983 * 16 14 12 19 19 H 1.48492 * 109.47190 * 330.00583 * 16 14 12 20 20 C 1.46900 * 111.00033 * 63.78879 * 10 8 7 21 21 C 1.53004 * 109.47077 * 272.18900 * 20 10 8 22 22 C 1.53000 * 109.47253 * 32.18511 * 20 10 8 23 23 C 1.52999 * 109.47329 * 59.99525 * 8 7 6 24 24 H 1.09000 * 109.47805 * 299.99834 * 1 2 3 25 25 H 1.09004 * 109.47246 * 60.00442 * 1 2 3 26 26 H 1.09002 * 109.47190 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46880 * 299.99564 * 5 3 2 28 28 H 1.09001 * 109.47017 * 180.02562 * 5 3 2 29 29 H 1.09005 * 109.46526 * 300.00236 * 6 5 3 30 30 H 1.08995 * 109.47280 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.47470 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47017 * 59.99906 * 7 6 5 33 33 H 1.09000 * 109.46893 * 308.95226 * 11 10 8 34 34 H 1.08991 * 109.47461 * 68.95600 * 11 10 8 35 35 H 0.97001 * 120.00238 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47432 * 152.18461 * 20 10 8 37 37 H 1.09000 * 109.47198 * 162.74370 * 21 20 10 38 38 H 1.09010 * 109.46445 * 282.73921 * 21 20 10 39 39 H 1.09002 * 109.47210 * 42.73454 * 21 20 10 40 40 H 1.09001 * 109.47172 * 294.46984 * 22 20 10 41 41 H 1.08999 * 109.47268 * 54.46233 * 22 20 10 42 42 H 1.09001 * 109.47409 * 174.46690 * 22 20 10 43 43 H 1.08998 * 109.46759 * 60.00369 * 23 8 7 44 44 H 1.08995 * 109.47280 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3448 1.9993 -0.5139 5 6 2.2175 1.7715 1.4425 6 6 3.1514 0.7976 2.1638 7 6 4.5000 0.7553 1.4426 8 6 4.2926 0.2894 0.0000 9 1 3.8493 -0.7064 0.0001 10 7 5.5875 0.2495 -0.6926 11 6 6.2134 1.5782 -0.7156 12 6 7.4218 1.5488 -1.6156 13 1 7.6537 0.6572 -2.1792 14 6 8.2315 2.6600 -1.7192 15 7 9.2863 2.6341 -2.5041 16 14 7.8301 4.2022 -0.7445 17 1 8.5040 4.1416 0.5774 18 1 8.3063 5.3959 -1.4885 19 1 6.3612 4.2950 -0.5476 20 6 6.4813 -0.7429 -0.0810 21 6 7.2618 -0.0905 1.0619 22 6 5.6527 -1.9067 0.4666 23 6 3.3588 1.2634 -0.7213 24 1 -0.3635 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.2567 1.8015 1.9563 28 1 2.6603 2.7675 1.4424 29 1 2.7080 -0.1982 2.1637 30 1 3.2988 1.1293 3.1915 31 1 5.1652 0.0612 1.9561 32 1 4.9433 1.7512 1.4425 33 1 5.4984 2.3102 -1.0913 34 1 6.5187 1.8536 0.2938 35 1 9.8557 3.4159 -2.5773 36 1 7.1789 -1.1151 -0.8313 37 1 7.6829 -0.8651 1.7029 38 1 8.0671 0.5184 0.6507 39 1 6.5915 0.5400 1.6462 40 1 5.0253 -1.5528 1.2847 41 1 5.0225 -2.3089 -0.3266 42 1 6.3197 -2.6876 0.8318 43 1 3.8021 2.2591 -0.7213 44 1 3.2107 0.9312 -1.7487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070329032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:49 Heat of formation + Delta-G solvation = -56.401428 kcal Electronic energy + Delta-G solvation = -21188.785610 eV Core-core repulsion = 18333.695416 eV Total energy + Delta-G solvation = -2855.090194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28305 -39.03858 -36.01595 -34.75233 -32.85743 -31.16749 -30.74284 -28.45149 -27.70552 -27.22109 -23.90352 -23.53916 -22.96970 -20.72904 -19.84573 -18.75986 -17.28465 -16.98095 -16.72260 -16.27385 -16.12772 -15.57250 -15.36586 -15.17675 -14.58808 -14.41234 -14.32676 -13.77657 -13.44983 -13.32363 -13.09936 -12.93009 -12.77831 -12.61643 -12.52658 -12.36759 -12.11613 -11.99950 -11.88369 -11.81126 -11.59201 -11.45209 -11.35498 -11.07966 -10.72559 -10.55468 -10.34195 -8.74215 -8.24457 -6.24444 1.31893 1.33627 1.44308 2.35165 2.95330 3.10073 3.27830 3.84224 3.91724 3.99259 4.20058 4.25765 4.31214 4.37712 4.45146 4.50712 4.58902 4.63337 4.66809 4.69093 4.77099 4.80342 4.82103 4.88203 4.94283 4.97998 4.99885 5.08422 5.16558 5.21128 5.22569 5.26720 5.33713 5.43817 5.50746 5.55302 5.62488 5.69330 6.12177 6.39760 6.56966 6.80637 6.85745 7.38232 8.92928 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022906 B = 0.007280 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.103178 B = 3845.091117 C = 4314.245056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.098 3.902 4 H 0.071 0.929 5 C -0.138 4.138 6 C -0.102 4.102 7 C -0.161 4.161 8 C 0.091 3.909 9 H 0.092 0.908 10 N -0.539 5.539 11 C 0.171 3.829 12 C -0.500 4.500 13 H 0.030 0.970 14 C 0.008 3.992 15 N -0.952 5.952 16 Si 0.937 3.063 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.248 1.248 20 C 0.090 3.910 21 C -0.183 4.183 22 C -0.145 4.145 23 C -0.112 4.112 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.024 0.976 34 H 0.001 0.999 35 H 0.264 0.736 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.841 -3.525 11.459 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.039 3.961 4 H 0.089 0.911 5 C -0.176 4.176 6 C -0.140 4.140 7 C -0.200 4.200 8 C -0.018 4.018 9 H 0.110 0.890 10 N -0.262 5.262 11 C 0.044 3.956 12 C -0.539 4.539 13 H 0.049 0.951 14 C -0.188 4.188 15 N -0.593 5.593 16 Si 0.761 3.239 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.172 1.172 20 C -0.018 4.018 21 C -0.241 4.241 22 C -0.202 4.202 23 C -0.150 4.150 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.019 0.981 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.677 -3.747 10.888 21.096 hybrid contribution 0.702 1.302 0.448 1.546 sum -16.974 -2.445 11.337 20.558 Atomic orbital electron populations 1.22932 0.80231 1.03489 1.00494 1.87926 1.20704 1.27863 1.95123 1.22059 0.93520 0.84792 0.95680 0.91078 1.22016 1.00613 0.99315 0.95642 1.21331 0.94037 1.00252 0.98424 1.22626 0.98694 1.01107 0.97547 1.21716 0.89383 0.99835 0.90830 0.89021 1.62294 1.03649 1.07321 1.52936 1.20002 0.93053 0.88164 0.94391 1.21249 1.08583 0.99171 1.24898 0.95139 1.25765 0.94642 1.01925 0.96506 1.70057 1.17100 1.31238 1.40942 0.85855 0.80044 0.79011 0.78986 1.19330 1.20948 1.17170 1.21391 0.93887 0.92586 0.93938 1.22689 1.01091 1.01299 0.99043 1.22118 1.00036 0.96964 1.01084 1.21736 0.94340 0.99595 0.99345 0.93091 0.93762 0.88823 0.90131 0.91413 0.91215 0.91273 0.90244 0.93642 0.95826 0.98144 0.92718 0.93867 0.91607 0.94589 0.90864 0.90981 0.92504 0.91336 0.91823 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.63 16 2 O -0.40 -9.62 9.00 -148.98 -1.34 -10.96 16 3 C 0.10 2.37 2.92 30.59 0.09 2.46 16 4 H 0.07 1.51 7.79 -2.39 -0.02 1.49 16 5 C -0.14 -2.96 5.63 30.59 0.17 -2.79 16 6 C -0.10 -2.35 5.78 30.59 0.18 -2.17 16 7 C -0.16 -4.74 3.04 30.59 0.09 -4.65 16 8 C 0.09 3.03 1.57 44.92 0.07 3.10 16 9 H 0.09 3.01 5.53 -2.39 -0.01 3.00 16 10 N -0.54 -22.66 4.73 -850.41 -4.02 -26.68 16 11 C 0.17 8.19 2.46 85.56 0.21 8.40 16 12 C -0.50 -29.35 8.25 25.60 0.21 -29.14 16 13 H 0.03 2.02 7.65 -2.91 -0.02 2.00 16 14 C 0.01 0.48 5.47 84.66 0.46 0.94 16 15 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 16 Si 0.94 44.69 27.38 68.60 1.88 46.56 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.25 -10.95 6.68 99.48 0.66 -10.28 16 20 C 0.09 3.53 2.80 44.92 0.13 3.66 16 21 C -0.18 -6.92 7.32 71.98 0.53 -6.40 16 22 C -0.14 -4.30 7.76 71.98 0.56 -3.75 16 23 C -0.11 -3.59 4.73 30.60 0.14 -3.45 16 24 H 0.05 0.69 7.87 -2.39 -0.02 0.67 16 25 H 0.04 0.67 8.09 -2.38 -0.02 0.65 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.38 7.87 -2.38 -0.02 1.36 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.58 7.68 -2.38 -0.02 1.56 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 2.29 3.96 -2.39 -0.01 2.28 16 32 H 0.04 1.50 6.46 -2.39 -0.02 1.48 16 33 H 0.02 1.15 5.25 -2.39 -0.01 1.14 16 34 H 0.00 0.05 3.90 -2.39 -0.01 0.04 16 35 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.04 1.97 7.74 -2.39 -0.02 1.95 16 37 H 0.07 2.09 8.02 -2.39 -0.02 2.07 16 38 H 0.03 1.63 6.75 -2.38 -0.02 1.61 16 39 H 0.07 2.59 3.74 -2.39 -0.01 2.58 16 40 H 0.07 1.94 5.03 -2.39 -0.01 1.93 16 41 H 0.06 1.70 7.69 -2.39 -0.02 1.68 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 2.20 6.21 -2.39 -0.01 2.19 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -67.37 310.76 1.81 -65.56 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.93 Total: 18.04 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 4.07 Total: -32.14 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -3.72 Total: -87.06 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.34 Total: -10.96 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.56 kcal Total: -67.37 1.81 -65.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070329032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.156 kcal (2) G-P(sol) polarization free energy of solvation -67.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds