Wall clock time and date at job start Mon Mar 30 2020 06:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42904 * 109.47038 * 2 1 4 4 C 1.42899 * 113.99737 * 179.97438 * 3 2 1 5 5 H 1.08994 * 112.85513 * 341.19656 * 4 3 2 6 6 C 1.53783 * 113.69017 * 112.47038 * 4 3 2 7 7 C 1.53775 * 87.08476 * 89.11928 * 6 4 3 8 8 H 1.08994 * 113.69326 * 270.87258 * 7 6 4 9 9 N 1.46898 * 113.61160 * 139.97890 * 7 6 4 10 10 C 1.46906 * 110.99888 * 107.50459 * 9 7 6 11 11 H 1.08999 * 109.46727 * 325.00012 * 10 9 7 12 12 C 1.50706 * 109.47211 * 204.99964 * 10 9 7 13 13 H 1.08001 * 119.99930 * 0.02562 * 12 10 9 14 14 C 1.37871 * 119.99762 * 180.02562 * 12 10 9 15 15 N 1.31518 * 120.00279 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99682 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47299 * 60.00109 * 16 14 12 18 18 H 1.48506 * 109.47208 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47183 * 299.99603 * 16 14 12 20 20 C 1.52995 * 109.46889 * 85.00162 * 10 9 7 21 21 C 1.52997 * 109.47150 * 295.00004 * 20 10 9 22 22 C 1.53779 * 87.08100 * 25.43529 * 7 6 4 23 23 C 1.53000 * 113.61827 * 89.11453 * 22 7 6 24 24 C 1.53000 * 113.61580 * 220.01879 * 22 7 6 25 25 H 1.08999 * 109.47511 * 60.00037 * 1 2 3 26 26 H 1.09005 * 109.47063 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47486 * 299.99648 * 1 2 3 28 28 H 1.09002 * 109.47650 * 239.99825 * 2 1 3 29 29 H 1.09001 * 109.47309 * 119.99469 * 2 1 3 30 30 H 1.09004 * 113.61106 * 334.57178 * 6 4 3 31 31 H 1.08997 * 113.61052 * 203.67728 * 6 4 3 32 32 H 1.00902 * 111.00533 * 343.54865 * 9 7 6 33 33 H 0.96995 * 120.00082 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.47321 * 55.00188 * 20 10 9 35 35 H 1.09004 * 109.47114 * 174.99982 * 20 10 9 36 36 H 1.09007 * 109.47386 * 180.02562 * 21 20 10 37 37 H 1.09000 * 109.47158 * 300.00283 * 21 20 10 38 38 H 1.09004 * 109.47334 * 60.00501 * 21 20 10 39 39 H 1.08993 * 109.47234 * 60.00024 * 23 22 7 40 40 H 1.08999 * 109.47218 * 180.02562 * 23 22 7 41 41 H 1.09007 * 109.46970 * 299.99975 * 23 22 7 42 42 H 1.08995 * 109.47071 * 59.99510 * 24 22 7 43 43 H 1.08997 * 109.47467 * 179.97438 * 24 22 7 44 44 H 1.09005 * 109.46749 * 299.99730 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9277 0.5458 0.3247 6 6 4.0048 2.0452 -1.3006 7 6 3.8416 3.4320 -0.6565 8 1 2.8677 3.8870 -0.8373 9 7 4.9582 4.3451 -0.9346 10 6 4.5582 5.3920 -1.8844 11 1 3.8544 4.9779 -2.6064 12 6 5.7762 5.9058 -2.6081 13 1 6.7500 5.4954 -2.3850 14 6 5.6473 6.8998 -3.5547 15 7 4.4614 7.3993 -3.8267 16 14 7.1569 7.5362 -4.4522 17 1 7.8017 6.4200 -5.1895 18 1 6.7526 8.5946 -5.4122 19 1 8.1166 8.0996 -3.4688 20 6 3.8930 6.5419 -1.1254 21 6 2.5897 6.0494 -0.4934 22 6 3.9482 2.7254 0.7051 23 6 5.3838 2.5974 1.2185 24 6 2.9859 3.2770 1.7590 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.3649 1.8891 -2.1691 31 1 5.0430 1.7680 -1.4832 32 1 5.7635 3.8393 -1.2720 33 1 4.3707 8.0983 -4.4929 34 1 4.5642 6.8977 -0.3437 35 1 3.6765 7.3564 -1.8168 36 1 2.1155 6.8687 0.0470 37 1 1.9185 5.6936 -1.2751 38 1 2.8062 5.2350 0.1981 39 1 5.8188 3.5902 1.3324 40 1 5.3810 2.0888 2.1826 41 1 5.9745 2.0214 0.5060 42 1 1.9597 3.1594 1.4109 43 1 3.1174 2.7304 2.6927 44 1 3.1948 4.3341 1.9238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082922945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:54 Heat of formation + Delta-G solvation = -51.752709 kcal Electronic energy + Delta-G solvation = -20525.220749 eV Core-core repulsion = 17670.332138 eV Total energy + Delta-G solvation = -2854.888611 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30659 -38.17051 -36.72119 -33.96620 -32.28033 -31.98650 -30.64190 -28.56214 -28.06064 -25.17984 -23.84349 -23.61491 -23.14169 -21.33042 -19.63383 -18.35401 -17.29732 -16.93566 -16.58093 -16.15411 -15.91366 -15.39789 -15.18772 -14.48640 -14.25778 -14.14746 -13.76770 -13.63457 -13.38535 -13.20816 -13.02558 -13.01587 -12.88695 -12.80816 -12.68464 -12.47172 -12.22422 -12.19093 -11.93766 -11.76289 -11.55693 -11.48695 -11.25112 -10.76409 -10.50066 -10.45203 -10.24598 -8.82868 -8.09048 -6.23725 1.42342 1.44253 1.51659 2.42912 2.67894 3.17953 3.61744 3.68147 3.77376 4.00194 4.22285 4.28382 4.32949 4.44601 4.47656 4.52794 4.60669 4.65917 4.69958 4.81925 4.84230 4.86964 4.94111 4.99677 5.06249 5.10183 5.13514 5.21418 5.25133 5.28862 5.35832 5.41157 5.48438 5.61412 5.66908 5.70005 5.77809 5.93878 6.32754 6.42849 6.60011 6.87567 7.10053 7.46768 8.95245 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027911 B = 0.005272 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.934265 B = 5309.557529 C = 5373.849883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.383 6.383 4 C 0.085 3.915 5 H 0.092 0.908 6 C -0.189 4.189 7 C 0.068 3.932 8 H 0.080 0.920 9 N -0.665 5.665 10 C 0.227 3.773 11 H -0.040 1.040 12 C -0.537 4.537 13 H 0.059 0.941 14 C 0.013 3.987 15 N -0.917 5.917 16 Si 0.960 3.040 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.099 4.099 21 C -0.146 4.146 22 C -0.071 4.071 23 C -0.112 4.112 24 C -0.125 4.125 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.331 0.669 33 H 0.261 0.739 34 H 0.029 0.971 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 -14.480 9.688 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.303 6.303 4 C 0.026 3.974 5 H 0.110 0.890 6 C -0.228 4.228 7 C -0.043 4.043 8 H 0.098 0.902 9 N -0.294 5.294 10 C 0.119 3.881 11 H -0.023 1.023 12 C -0.575 4.575 13 H 0.077 0.923 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.786 3.214 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.138 4.138 21 C -0.203 4.203 22 C -0.073 4.073 23 C -0.169 4.169 24 C -0.182 4.182 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.150 0.850 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.906 -13.775 10.120 17.533 hybrid contribution 0.589 0.070 -1.864 1.956 sum -3.318 -13.705 8.255 16.340 Atomic orbital electron populations 1.21758 0.93082 1.03311 1.02449 1.22719 0.96186 0.83076 1.00719 1.87878 1.20173 1.27736 1.94494 1.22967 0.81196 0.97944 0.95287 0.89003 1.24175 1.01362 0.99277 0.97998 1.23305 0.95003 0.89996 0.95984 0.90159 1.60515 1.06320 1.14211 1.48343 1.18818 0.93198 0.88761 0.87361 1.02262 1.21626 0.94326 1.20786 1.20800 0.92260 1.25723 0.98648 0.96633 0.97599 1.70037 1.23992 1.28113 1.33543 0.85584 0.79655 0.77931 0.78252 1.19637 1.21155 1.19617 1.21341 0.94782 1.00023 0.97648 1.22029 0.97390 1.01125 0.99749 1.22263 0.96731 0.93799 0.94459 1.21374 0.92772 1.02330 1.00472 1.21527 0.98685 1.00115 0.97856 0.93091 0.88924 0.92112 0.93274 0.91892 0.93150 0.88653 0.85041 0.93032 0.95179 0.92455 0.93696 0.95541 0.90671 0.92138 0.91344 0.92517 0.92786 0.91590 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.05 0.99 6.50 71.98 0.47 1.45 16 3 O -0.38 -10.60 8.81 -148.98 -1.31 -11.91 16 4 C 0.08 2.25 3.79 31.12 0.12 2.37 16 5 H 0.09 1.98 7.83 -2.39 -0.02 1.96 16 6 C -0.19 -5.99 7.18 31.12 0.22 -5.76 16 7 C 0.07 2.48 2.14 45.44 0.10 2.58 16 8 H 0.08 3.36 5.08 -2.39 -0.01 3.34 16 9 N -0.67 -28.07 5.30 -470.62 -2.49 -30.57 16 10 C 0.23 11.79 2.20 44.17 0.10 11.89 16 11 H -0.04 -2.37 7.84 -2.39 -0.02 -2.39 16 12 C -0.54 -29.89 8.59 25.60 0.22 -29.67 16 13 H 0.06 3.20 7.62 -2.91 -0.02 3.18 16 14 C 0.01 0.73 5.29 84.65 0.45 1.18 16 15 N -0.92 -54.11 11.29 21.45 0.24 -53.86 16 16 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C -0.10 -5.05 5.45 30.59 0.17 -4.88 16 21 C -0.15 -6.28 8.48 71.98 0.61 -5.67 16 22 C -0.07 -2.06 1.35 -51.65 -0.07 -2.13 16 23 C -0.11 -2.87 8.44 71.98 0.61 -2.26 16 24 C -0.12 -3.48 8.24 71.98 0.59 -2.89 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.10 2.80 7.34 -2.39 -0.02 2.78 16 32 H 0.33 13.65 7.61 -89.69 -0.68 12.97 16 33 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 3.27 5.95 -2.38 -0.01 3.26 16 36 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.03 1.15 7.90 -2.39 -0.02 1.13 16 38 H 0.07 2.99 3.56 -2.38 -0.01 2.98 16 39 H 0.06 1.79 7.77 -2.39 -0.02 1.77 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.36 7.34 -2.38 -0.02 1.34 16 42 H 0.05 1.59 6.96 -2.39 -0.02 1.57 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 1.41 7.09 -2.38 -0.02 1.40 16 Total: -1.00 -61.80 333.80 3.05 -58.74 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.27 Total: 27.12 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 4.32 Total: -35.64 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -2.25 Total: -84.43 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.31 Total: -11.91 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -61.80 3.05 -58.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082922945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.988 kcal (2) G-P(sol) polarization free energy of solvation -61.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds