Wall clock time and date at job start Mon Mar 30 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47234 * 2 1 4 4 H 1.08996 * 109.46758 * 305.43936 * 3 2 1 5 5 C 1.50700 * 109.46931 * 185.44468 * 3 2 1 6 6 H 1.08000 * 119.99733 * 240.00015 * 5 3 2 7 7 C 1.37879 * 120.00374 * 59.99588 * 5 3 2 8 8 N 1.31511 * 119.99518 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99891 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47354 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47138 * 120.00281 * 9 7 5 12 12 H 1.48500 * 109.46798 * 240.00057 * 9 7 5 13 13 N 1.46893 * 109.47249 * 65.44254 * 3 2 1 14 14 C 1.46906 * 111.00081 * 205.26922 * 13 3 2 15 15 H 1.08998 * 110.98301 * 324.18761 * 14 13 3 16 16 C 1.55303 * 111.12528 * 88.38242 * 14 13 3 17 17 C 1.54375 * 102.25123 * 152.05690 * 16 14 13 18 18 C 1.52995 * 109.83420 * 98.15658 * 17 16 14 19 19 C 1.53006 * 109.83148 * 219.04013 * 17 16 14 20 20 O 1.43236 * 107.58912 * 338.64096 * 17 16 14 21 21 C 1.43647 * 109.97277 * 358.29245 * 20 17 16 22 22 C 1.53006 * 110.30893 * 265.51309 * 21 20 17 23 23 C 1.52997 * 110.31143 * 143.34098 * 21 20 17 24 24 H 1.08996 * 109.47324 * 179.57407 * 1 2 3 25 25 H 1.08997 * 109.47737 * 299.57315 * 1 2 3 26 26 H 1.09001 * 109.47096 * 59.57333 * 1 2 3 27 27 H 1.08997 * 109.47523 * 239.99565 * 2 1 3 28 28 H 1.09004 * 109.46608 * 119.99727 * 2 1 3 29 29 H 0.97009 * 119.99489 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99816 * 329.21861 * 13 3 2 31 31 H 1.09003 * 110.85069 * 270.24494 * 16 14 13 32 32 H 1.08998 * 110.85041 * 33.86358 * 16 14 13 33 33 H 1.09007 * 109.47122 * 60.00188 * 18 17 16 34 34 H 1.09007 * 109.47495 * 179.97438 * 18 17 16 35 35 H 1.08996 * 109.47194 * 300.00348 * 18 17 16 36 36 H 1.09003 * 109.47140 * 59.99467 * 19 17 16 37 37 H 1.09002 * 109.47218 * 180.02562 * 19 17 16 38 38 H 1.09000 * 109.46824 * 299.99887 * 19 17 16 39 39 H 1.08998 * 109.46973 * 175.71172 * 22 21 20 40 40 H 1.09005 * 109.46545 * 295.70950 * 22 21 20 41 41 H 1.08996 * 109.46851 * 55.70954 * 22 21 20 42 42 H 1.09001 * 109.47215 * 304.28780 * 23 21 20 43 43 H 1.08998 * 109.47463 * 64.28871 * 23 21 20 44 44 H 1.09004 * 109.46762 * 184.28877 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9836 -0.8373 5 6 3.5409 1.4446 -0.1348 6 1 4.1519 1.8871 0.6380 7 6 4.1343 0.8814 -1.2447 8 7 3.3903 0.3421 -2.1855 9 14 5.9948 0.8834 -1.4114 10 1 6.5972 1.5457 -0.2265 11 1 6.4853 -0.5154 -1.5000 12 1 6.3808 1.6222 -2.6403 13 7 1.6605 2.0961 1.2596 14 6 1.5743 3.5529 1.0918 15 1 2.3360 3.9118 0.3996 16 6 0.1539 3.9803 0.6316 17 6 0.0425 5.4116 1.1990 18 6 0.3651 6.4305 0.1042 19 6 -1.3724 5.6509 1.7299 20 8 0.9903 5.5290 2.2666 21 6 1.6722 4.2792 2.4569 22 6 0.9804 3.4573 3.5464 23 6 3.1370 4.5240 2.8244 24 1 -0.3634 -1.0276 -0.0076 25 1 -0.3634 0.5072 0.8937 26 1 -0.3633 0.5204 -0.8861 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8077 -0.0538 -2.9666 30 1 0.7937 1.7211 1.6147 31 1 0.0843 3.9877 -0.4562 32 1 -0.6063 3.3307 1.0655 33 1 -0.3392 6.3140 -0.7196 34 1 0.2843 7.4387 0.5108 35 1 1.3794 6.2650 -0.2588 36 1 -1.5903 4.9323 2.5200 37 1 -1.4446 6.6629 2.1285 38 1 -2.0903 5.5281 0.9190 39 1 1.4614 2.4825 3.6267 40 1 1.0573 3.9801 4.4998 41 1 -0.0703 3.3239 3.2888 42 1 3.6055 5.1419 2.0584 43 1 3.1900 5.0349 3.7858 44 1 3.6593 3.5695 2.8909 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086927376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:18 Heat of formation + Delta-G solvation = -65.313025 kcal Electronic energy + Delta-G solvation = -21011.719614 eV Core-core repulsion = 18156.242984 eV Total energy + Delta-G solvation = -2855.476630 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04199 -36.15527 -34.02846 -32.77914 -31.56499 -30.06690 -28.03039 -27.48767 -26.63753 -26.01876 -23.09952 -22.15288 -20.27882 -19.57446 -18.86368 -16.21944 -15.79555 -15.37894 -14.74743 -14.63861 -13.91385 -13.77583 -13.57746 -13.17764 -12.92237 -12.58069 -12.54937 -12.29089 -11.97474 -11.81841 -11.72351 -11.54237 -11.52029 -11.48212 -11.18412 -11.05185 -10.90593 -10.61239 -10.46982 -10.36485 -10.20022 -9.95921 -9.67348 -9.53809 -9.16213 -9.03335 -8.36392 -7.23612 -5.98264 -4.02147 3.30391 3.38800 3.43733 4.04355 4.43816 4.82441 5.04193 5.11707 5.19202 5.31812 5.36408 5.50096 5.55403 5.69450 5.74320 5.80631 5.88335 5.95350 6.05229 6.07135 6.11593 6.13762 6.14454 6.27732 6.29372 6.31866 6.38509 6.41664 6.48116 6.57409 6.74383 6.79263 6.81787 7.06161 7.14484 7.45149 7.58103 7.76141 7.91019 8.26866 8.37338 8.72320 9.06343 9.63103 11.07091 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.007017 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.333654 B = 3989.551598 C = 4359.533488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.492 4.492 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.669 5.669 14 C 0.082 3.918 15 H 0.096 0.904 16 C -0.177 4.177 17 C 0.104 3.896 18 C -0.150 4.150 19 C -0.150 4.150 20 O -0.371 6.371 21 C 0.107 3.893 22 C -0.152 4.152 23 C -0.132 4.132 24 H 0.037 0.963 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.100 0.900 28 H 0.041 0.959 29 H 0.258 0.742 30 H 0.320 0.680 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 7.089 6.303 11.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.530 4.530 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.299 5.299 14 C -0.030 4.030 15 H 0.114 0.886 16 C -0.217 4.217 17 C 0.064 3.936 18 C -0.208 4.208 19 C -0.208 4.208 20 O -0.291 6.291 21 C 0.068 3.932 22 C -0.209 4.209 23 C -0.189 4.189 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.590 7.177 6.489 11.707 hybrid contribution -0.002 -0.150 -0.900 0.913 sum -6.592 7.028 5.589 11.139 Atomic orbital electron populations 1.21880 0.99677 0.99575 0.99571 1.21773 0.91154 1.00420 1.03116 1.19158 0.95435 0.89872 0.84280 0.97970 1.21255 0.91221 1.36293 1.04274 0.91942 1.24952 0.98027 0.95672 0.95888 1.69882 1.34576 1.39545 1.09613 0.86523 0.85922 0.77589 0.77869 1.19750 1.21166 1.21298 1.60653 1.35820 1.00694 1.32768 1.23099 0.94396 0.90823 0.94653 0.88590 1.23906 1.00149 0.95677 1.01924 1.21856 0.89166 0.94991 0.87564 1.22055 1.02313 0.98855 0.97551 1.22101 0.95562 1.02020 1.01104 1.88416 1.53943 1.33702 1.53058 1.22268 0.92365 0.83271 0.95340 1.22071 1.00055 1.01044 0.97756 1.21735 0.93875 1.02633 1.00679 0.94419 0.94727 0.93907 0.88216 0.94052 0.93176 0.86162 0.90492 0.91166 0.91989 0.92445 0.91948 0.92432 0.92416 0.92044 0.90069 0.93238 0.93427 0.92577 0.93220 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.74 37.15 0.36 -2.44 16 2 C -0.13 -2.87 5.36 -26.73 -0.14 -3.01 16 3 C 0.22 5.20 1.92 -68.87 -0.13 5.07 16 4 H 0.00 0.07 7.82 -51.93 -0.41 -0.34 16 5 C -0.49 -13.09 8.56 -34.44 -0.29 -13.39 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.00 11.29 55.43 0.63 -24.38 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 N -0.67 -13.28 5.11 -98.61 -0.50 -13.79 16 14 C 0.08 1.51 2.35 -65.46 -0.15 1.35 16 15 H 0.10 2.03 7.68 -51.93 -0.40 1.63 16 16 C -0.18 -2.83 5.29 -24.79 -0.13 -2.96 16 17 C 0.10 1.53 1.26 -89.90 -0.11 1.42 16 18 C -0.15 -2.04 8.73 37.15 0.32 -1.71 16 19 C -0.15 -1.87 8.75 37.16 0.33 -1.55 16 20 O -0.37 -6.15 10.05 -35.23 -0.35 -6.50 16 21 C 0.11 1.77 1.13 -89.59 -0.10 1.67 16 22 C -0.15 -2.28 8.05 37.16 0.30 -1.98 16 23 C -0.13 -2.15 8.95 37.16 0.33 -1.81 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.03 0.58 6.46 -51.93 -0.34 0.24 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.32 5.88 5.35 -39.29 -0.21 5.67 16 31 H 0.08 1.27 7.82 -51.93 -0.41 0.87 16 32 H 0.07 1.08 7.17 -51.93 -0.37 0.70 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.72 7.93 -51.93 -0.41 0.30 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.26 7.32 -51.93 -0.38 0.88 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.68 7.31 -51.93 -0.38 0.30 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -27.10 337.33 -7.92 -35.02 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.23 Total: 6.33 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 0.48 Total: -17.96 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.12 Total: -38.16 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.35 Total: -6.50 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.10 -7.92 -35.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086927376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.298 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds