Wall clock time and date at job start Mon Mar 30 2020 07:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46897 * 2 1 4 4 N 1.46503 * 109.46905 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00029 * 87.81140 * 4 3 2 6 6 H 1.07995 * 120.00061 * 218.40128 * 5 4 3 7 7 C 1.38818 * 120.00044 * 38.40209 * 5 4 3 8 8 N 1.31618 * 119.99724 * 23.48518 * 7 5 4 9 9 Si 1.86804 * 119.99739 * 203.48528 * 7 5 4 10 10 H 1.48497 * 109.47026 * 60.00296 * 9 7 5 11 11 H 1.48505 * 109.46723 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47140 * 299.99547 * 9 7 5 13 13 C 1.46501 * 120.00298 * 267.80517 * 4 3 2 14 14 H 1.09005 * 110.43223 * 46.11467 * 13 4 3 15 15 C 1.54809 * 110.49017 * 168.79627 * 13 4 3 16 16 C 1.55003 * 102.08975 * 97.79909 * 15 13 4 17 17 C 1.52998 * 110.62026 * 278.52447 * 16 15 13 18 18 C 1.52999 * 110.61542 * 155.52414 * 16 15 13 19 19 O 1.44384 * 103.48803 * 37.02375 * 16 15 13 20 20 C 1.43739 * 106.97511 * 319.94048 * 19 16 15 21 21 C 1.53001 * 109.87817 * 267.08458 * 20 19 16 22 22 C 1.53001 * 110.00183 * 146.01040 * 20 19 16 23 23 H 1.09000 * 109.47205 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47242 * 299.99991 * 1 2 3 25 25 H 1.08999 * 109.47007 * 60.00322 * 1 2 3 26 26 H 1.09005 * 109.47242 * 240.00009 * 2 1 3 27 27 H 1.08999 * 109.47007 * 119.99678 * 2 1 3 28 28 H 1.08998 * 109.47681 * 60.00386 * 3 2 1 29 29 H 1.09003 * 109.47447 * 299.99933 * 3 2 1 30 30 H 0.97003 * 119.99301 * 180.02562 * 8 7 5 31 31 H 1.08996 * 110.91063 * 215.99462 * 15 13 4 32 32 H 1.08997 * 110.90562 * 339.60709 * 15 13 4 33 33 H 1.09000 * 109.47162 * 167.71684 * 17 16 15 34 34 H 1.08998 * 109.47039 * 287.71865 * 17 16 15 35 35 H 1.09003 * 109.46745 * 47.71529 * 17 16 15 36 36 H 1.08998 * 109.47446 * 304.47698 * 18 16 15 37 37 H 1.09002 * 109.46815 * 64.47783 * 18 16 15 38 38 H 1.09005 * 109.46535 * 184.47555 * 18 16 15 39 39 H 1.09004 * 109.47183 * 184.91842 * 21 20 19 40 40 H 1.08992 * 109.47543 * 304.92759 * 21 20 19 41 41 H 1.09006 * 109.46550 * 64.92217 * 21 20 19 42 42 H 1.08995 * 109.47071 * 302.08475 * 22 20 19 43 43 H 1.08997 * 109.47767 * 62.09330 * 22 20 19 44 44 H 1.09006 * 109.46933 * 182.09365 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1901 1.3970 -1.1841 6 1 5.0949 0.8126 -1.2625 7 6 3.7217 2.1022 -2.2843 8 7 2.9363 3.1442 -2.1124 9 14 4.2062 1.5720 -4.0088 10 1 3.7407 0.1824 -4.2485 11 1 3.5789 2.4817 -5.0009 12 1 5.6835 1.6302 -4.1478 13 6 4.2370 1.4913 1.2687 14 1 3.8137 0.7819 1.9799 15 6 5.7399 1.2004 1.0383 16 6 6.3430 2.6275 0.9892 17 6 6.1525 3.2455 -0.3974 18 6 7.8247 2.5996 1.3693 19 8 5.5780 3.3505 1.9775 20 6 4.2132 2.9179 1.8507 21 6 3.4567 3.8530 0.9052 22 6 3.5375 2.9086 3.2234 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 2.6087 3.6367 -2.8812 31 1 6.1575 0.6301 1.8680 32 1 5.8950 0.6800 0.0933 33 1 6.3797 4.3107 -0.3548 34 1 6.8219 2.7592 -1.1070 35 1 5.1200 3.1068 -0.7183 36 1 7.9403 2.1320 2.3471 37 1 8.3799 2.0281 0.6254 38 1 8.2096 3.6188 1.4061 39 1 2.4037 3.5720 0.8818 40 1 3.5509 4.8801 1.2576 41 1 3.8765 3.7731 -0.0976 42 1 4.0916 2.2546 3.8967 43 1 3.5242 3.9203 3.6288 44 1 2.5152 2.5440 3.1227 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123990485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:50 Heat of formation + Delta-G solvation = -31.260409 kcal Electronic energy + Delta-G solvation = -21973.803933 eV Core-core repulsion = 19119.803935 eV Total energy + Delta-G solvation = -2853.999998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.39462 -37.46448 -34.94182 -34.17939 -33.39658 -31.48891 -29.83848 -28.55799 -27.63400 -26.76670 -25.21203 -23.12836 -21.83881 -21.08607 -20.24366 -18.16933 -17.24793 -16.51689 -16.02050 -15.91256 -15.65838 -15.32005 -14.95765 -14.59252 -13.93627 -13.82748 -13.78364 -13.61858 -13.20840 -12.98478 -12.95086 -12.81492 -12.75025 -12.63186 -12.57493 -12.42848 -12.27378 -12.09845 -11.89506 -11.67165 -11.35269 -11.28361 -11.17604 -10.98972 -10.84936 -10.35017 -10.08893 -8.40017 -7.67938 -5.27036 1.48986 1.54665 1.56773 2.56548 3.08709 3.33595 3.66814 3.97573 4.05749 4.26090 4.35668 4.39851 4.46983 4.50071 4.55403 4.63569 4.74805 4.78389 4.84477 4.87850 4.93637 4.97613 5.09302 5.10605 5.15061 5.17143 5.20261 5.30099 5.32582 5.36266 5.39957 5.42258 5.45976 5.63154 5.65092 5.82958 5.97625 5.97907 6.38657 6.50566 6.59088 7.29899 7.95608 8.51604 9.21379 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016547 B = 0.011820 C = 0.008337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.697641 B = 2368.340653 C = 3357.869769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.152 3.848 4 N -0.581 5.581 5 C -0.244 4.244 6 H 0.062 0.938 7 C -0.017 4.017 8 N -0.896 5.896 9 Si 0.927 3.073 10 H -0.286 1.286 11 H -0.300 1.300 12 H -0.279 1.279 13 C 0.147 3.853 14 H 0.058 0.942 15 C -0.143 4.143 16 C 0.104 3.896 17 C -0.199 4.199 18 C -0.131 4.131 19 O -0.388 6.388 20 C 0.073 3.927 21 C -0.153 4.153 22 C -0.131 4.131 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.249 0.751 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.022 0.978 34 H 0.046 0.954 35 H 0.135 0.865 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.010 0.990 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.637 -3.718 6.781 7.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.027 3.973 4 N -0.301 5.301 5 C -0.374 4.374 6 H 0.079 0.921 7 C -0.216 4.216 8 N -0.539 5.539 9 Si 0.757 3.243 10 H -0.212 1.212 11 H -0.227 1.227 12 H -0.205 1.205 13 C 0.039 3.961 14 H 0.076 0.924 15 C -0.181 4.181 16 C 0.065 3.935 17 C -0.256 4.256 18 C -0.188 4.188 19 O -0.309 6.309 20 C 0.031 3.969 21 C -0.210 4.210 22 C -0.189 4.189 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.152 0.848 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.029 0.971 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.653 -3.442 6.813 7.810 hybrid contribution 0.018 0.095 -1.394 1.398 sum 1.671 -3.347 5.418 6.584 Atomic orbital electron populations 1.21636 0.95368 1.01400 1.01240 1.21942 0.95526 0.99682 1.00032 1.20908 0.83072 0.93459 0.99909 1.43945 1.01036 1.84794 1.00363 1.18889 1.08923 1.21605 0.87987 0.92055 1.25464 1.00730 0.95109 1.00264 1.70068 1.37693 1.16749 1.29377 0.85984 0.78003 0.77444 0.82857 1.21236 1.22675 1.20520 1.21929 0.92485 0.92980 0.88682 0.92381 1.23296 0.95023 0.96913 1.02846 1.22381 0.92418 0.90336 0.88320 1.23049 1.08687 0.97551 0.96263 1.21733 0.92554 1.02220 1.02260 1.88735 1.19423 1.66241 1.56468 1.22963 0.82192 0.96202 0.95522 1.22462 1.00306 0.95143 1.03059 1.21812 1.00053 1.01852 0.95150 0.92106 0.92459 0.93951 0.94424 0.93295 0.95204 0.92107 0.94161 0.90200 0.89642 0.95921 0.93495 0.84771 0.91340 0.90400 0.92645 0.93231 0.97139 0.87803 0.91625 0.92915 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.91 71.98 0.71 -3.49 16 2 C -0.13 -4.85 6.25 30.59 0.19 -4.66 16 3 C 0.15 6.45 3.96 86.38 0.34 6.80 16 4 N -0.58 -25.43 1.33 -672.55 -0.89 -26.32 16 5 C -0.24 -11.59 5.27 84.04 0.44 -11.15 16 6 H 0.06 2.96 5.74 -2.91 -0.02 2.94 16 7 C -0.02 -0.83 4.07 84.86 0.35 -0.49 16 8 N -0.90 -46.61 9.87 21.65 0.21 -46.40 16 9 Si 0.93 41.70 29.61 68.60 2.03 43.73 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 C 0.15 5.76 3.14 45.98 0.14 5.91 16 14 H 0.06 2.15 7.70 -2.38 -0.02 2.14 16 15 C -0.14 -5.26 5.52 31.90 0.18 -5.08 16 16 C 0.10 3.95 1.25 -10.11 -0.01 3.93 16 17 C -0.20 -8.55 7.32 71.98 0.53 -8.03 16 18 C -0.13 -3.95 9.01 71.98 0.65 -3.30 16 19 O -0.39 -15.90 10.36 -148.98 -1.54 -17.44 16 20 C 0.07 2.88 1.11 -10.42 -0.01 2.87 16 21 C -0.15 -6.85 7.28 71.98 0.52 -6.32 16 22 C -0.13 -4.31 8.67 71.98 0.62 -3.68 16 23 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.04 1.51 8.14 -2.38 -0.02 1.50 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.03 1.23 6.46 -2.39 -0.02 1.21 16 29 H 0.06 2.99 5.65 -2.39 -0.01 2.97 16 30 H 0.25 12.97 8.31 -92.71 -0.77 12.20 16 31 H 0.08 2.53 8.05 -2.39 -0.02 2.51 16 32 H 0.09 3.35 5.27 -2.39 -0.01 3.34 16 33 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.13 6.42 1.30 -2.39 0.00 6.41 16 36 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.05 2.24 5.48 -2.38 -0.01 2.23 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.10 5.18 2.59 -2.38 -0.01 5.18 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -52.33 315.78 5.42 -46.91 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.96 Total: 26.22 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 4.65 Total: -26.69 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -0.68 Total: -72.72 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -1.54 Total: -17.44 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -52.33 5.42 -46.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123990485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.645 kcal (2) G-P(sol) polarization free energy of solvation -52.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds