Wall clock time and date at job start Mon Mar 30 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47144 * 2 1 4 4 H 1.08999 * 109.47099 * 305.66789 * 3 2 1 5 5 C 1.50696 * 109.46870 * 185.66721 * 3 2 1 6 6 H 1.08007 * 119.99878 * 239.99907 * 5 3 2 7 7 C 1.37875 * 120.00232 * 59.99959 * 5 3 2 8 8 N 1.31509 * 119.99979 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00133 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46640 * 60.00149 * 9 7 5 11 11 H 1.48496 * 109.46942 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47271 * 300.00205 * 9 7 5 13 13 N 1.46895 * 109.46957 * 65.66606 * 3 2 1 14 14 C 1.46908 * 111.00008 * 203.16106 * 13 3 2 15 15 C 1.52997 * 109.47021 * 185.58913 * 14 13 3 16 16 O 1.42898 * 109.47255 * 299.99309 * 15 14 13 17 17 C 1.52998 * 109.47601 * 59.99899 * 15 14 13 18 18 C 1.52996 * 109.47081 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.47283 * 299.99731 * 18 17 15 20 20 C 1.52998 * 109.46842 * 60.00123 * 19 18 17 21 21 H 1.09003 * 109.47319 * 60.00281 * 20 19 18 22 22 C 1.52999 * 109.46984 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47384 * 300.00231 * 20 19 18 24 24 H 1.09000 * 109.46841 * 176.81977 * 1 2 3 25 25 H 1.09006 * 109.47008 * 296.81500 * 1 2 3 26 26 H 1.08991 * 109.46917 * 56.81591 * 1 2 3 27 27 H 1.08997 * 109.46920 * 239.99996 * 2 1 3 28 28 H 1.09000 * 109.47092 * 119.99984 * 2 1 3 29 29 H 0.96998 * 120.00148 * 179.97438 * 8 7 5 30 30 H 1.00899 * 111.00678 * 327.11267 * 13 3 2 31 31 H 1.08997 * 109.47064 * 65.58504 * 14 13 3 32 32 H 1.09003 * 109.46687 * 305.58544 * 14 13 3 33 33 H 0.96708 * 113.99922 * 60.00368 * 16 15 14 34 34 H 1.08994 * 109.47027 * 59.99550 * 17 15 14 35 35 H 1.09003 * 109.46502 * 299.99914 * 17 15 14 36 36 H 1.08997 * 109.47015 * 179.97438 * 18 17 15 37 37 H 1.09003 * 109.47273 * 59.99692 * 18 17 15 38 38 H 1.09003 * 109.46934 * 300.00169 * 19 18 17 39 39 H 1.08998 * 109.47032 * 180.02562 * 19 18 17 40 40 H 1.09010 * 109.47232 * 180.02562 * 22 20 19 41 41 H 1.09007 * 109.47158 * 299.99434 * 22 20 19 42 42 H 1.08990 * 109.47491 * 59.99714 * 22 20 19 43 43 H 1.09005 * 109.47734 * 180.02562 * 23 20 19 44 44 H 1.09007 * 109.46871 * 299.99778 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5962 1.9848 -0.8349 5 6 3.5405 1.4448 -0.1403 6 1 4.1543 1.8864 0.6309 7 6 4.1297 0.8832 -1.2531 8 7 3.3823 0.3450 -2.1919 9 14 5.9896 0.8866 -1.4274 10 1 6.5946 0.1481 -0.2898 11 1 6.3684 0.2269 -2.7027 12 1 6.4842 2.2868 -1.4277 13 7 1.6652 2.0944 1.2619 14 6 1.6271 3.5550 1.1090 15 6 1.3712 4.2038 2.4707 16 8 0.1205 3.7464 2.9889 17 6 2.4941 3.8214 3.4370 18 6 2.2385 4.4708 4.7985 19 6 2.1992 5.9920 4.6387 20 6 1.0763 6.3744 3.6724 21 1 0.1222 6.0258 4.0679 22 6 1.0374 7.8954 3.5121 23 6 1.3318 5.7249 2.3109 24 1 -0.3633 -1.0261 -0.0570 25 1 -0.3633 0.4636 0.9172 26 1 -0.3633 0.5624 -0.8600 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7968 -0.0498 -2.9750 30 1 0.7826 1.7433 1.6021 31 1 0.8271 3.8274 0.4206 32 1 2.5811 3.9039 0.7137 33 1 0.0739 2.7889 3.1158 34 1 3.4481 4.1703 3.0418 35 1 2.5223 2.7377 3.5505 36 1 3.0382 4.1980 5.4870 37 1 1.2844 4.1223 5.1940 38 1 3.1533 6.3405 4.2433 39 1 2.0175 6.4546 5.6088 40 1 0.2371 8.1680 2.8240 41 1 0.8554 8.3585 4.4820 42 1 1.9914 8.2437 3.1166 43 1 0.5321 5.9977 1.6223 44 1 2.2859 6.0736 1.9154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226620828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:00 Heat of formation + Delta-G solvation = -103.478987 kcal Electronic energy + Delta-G solvation = -20407.526154 eV Core-core repulsion = 17550.394523 eV Total energy + Delta-G solvation = -2857.131630 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70502 -37.99702 -36.40067 -34.31026 -33.20070 -32.78979 -30.93328 -28.58801 -27.21606 -25.88668 -24.27194 -22.87365 -21.47694 -21.29744 -20.60881 -18.37211 -17.43373 -16.88537 -16.62889 -16.12071 -15.85985 -15.41937 -15.05911 -14.76186 -14.54665 -14.19210 -13.81975 -13.60172 -13.45090 -13.14833 -13.09518 -12.93868 -12.74509 -12.73493 -12.64724 -12.55881 -12.08937 -11.97169 -11.80224 -11.61863 -11.52969 -11.49635 -11.27581 -11.06864 -10.72962 -10.47711 -10.39944 -9.03312 -8.07330 -6.19180 1.41215 1.42277 1.49953 2.43020 3.17857 3.33547 3.49931 3.86410 3.91657 4.00510 4.15945 4.33420 4.45679 4.47732 4.56242 4.57619 4.64603 4.68177 4.71315 4.78437 4.84798 4.90792 4.94688 5.03411 5.09127 5.12545 5.21314 5.23968 5.25578 5.36791 5.40246 5.44327 5.46629 5.55877 5.59640 5.68558 5.73833 5.88605 6.33788 6.44722 6.84857 6.92724 6.97315 7.49601 8.95986 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022561 B = 0.005766 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.775422 B = 4854.577964 C = 5500.055731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.226 3.774 4 H -0.038 1.038 5 C -0.509 4.509 6 H 0.051 0.949 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.674 5.674 14 C 0.047 3.953 15 C 0.150 3.850 16 O -0.564 6.564 17 C -0.128 4.128 18 C -0.111 4.111 19 C -0.111 4.111 20 C -0.081 4.081 21 H 0.067 0.933 22 C -0.144 4.144 23 C -0.100 4.100 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.260 0.740 30 H 0.326 0.674 31 H 0.009 0.991 32 H 0.056 0.944 33 H 0.380 0.620 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.711 9.501 12.126 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C 0.118 3.882 4 H -0.021 1.021 5 C -0.548 4.548 6 H 0.069 0.931 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.307 5.307 14 C -0.083 4.083 15 C 0.109 3.891 16 O -0.371 6.371 17 C -0.166 4.166 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.100 4.100 21 H 0.086 0.914 22 C -0.202 4.202 23 C -0.138 4.138 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.144 0.856 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.229 0.771 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.187 10.042 12.176 16.329 hybrid contribution 0.385 -0.806 -1.360 1.627 sum -3.802 9.236 10.815 14.722 Atomic orbital electron populations 1.21754 0.96336 1.01158 1.00430 1.21573 0.94140 0.98804 1.01300 1.18902 0.94091 0.90700 0.84529 1.02063 1.21400 0.92674 1.36586 1.04143 0.93098 1.25670 1.02171 0.95379 0.95630 1.69995 1.36285 1.39911 1.09861 0.85679 0.80910 0.78189 0.77233 1.19751 1.21018 1.20060 1.60596 1.34984 1.03420 1.31683 1.22465 0.99343 0.89700 0.96807 1.21103 0.83767 0.93863 0.90324 1.86424 1.35573 1.28248 1.86839 1.21955 0.97704 1.01244 0.95716 1.21455 1.01795 0.95620 0.95993 1.21593 0.98306 0.95494 0.99421 1.20982 0.99243 0.95523 0.94235 0.91421 1.21822 1.01823 0.94422 1.02103 1.21582 1.01932 0.91838 0.98472 0.92329 0.92147 0.94902 0.91542 0.94163 0.93110 0.85567 0.97285 0.92545 0.77150 0.92747 0.91588 0.91658 0.91753 0.92240 0.90827 0.92845 0.91603 0.92548 0.92308 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 9.69 71.98 0.70 -4.48 16 2 C -0.12 -5.58 5.37 30.60 0.16 -5.42 16 3 C 0.23 11.28 2.02 44.17 0.09 11.37 16 4 H -0.04 -2.17 7.89 -2.39 -0.02 -2.19 16 5 C -0.51 -28.17 8.44 25.60 0.22 -27.95 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 7 C 0.01 0.53 5.29 84.65 0.45 0.98 16 8 N -0.92 -53.16 11.29 21.45 0.24 -52.91 16 9 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 N -0.67 -27.24 5.43 -495.45 -2.69 -29.93 16 14 C 0.05 1.79 4.64 86.30 0.40 2.19 16 15 C 0.15 4.50 0.78 -10.79 -0.01 4.49 16 16 O -0.56 -16.09 11.59 -148.98 -1.73 -17.82 16 17 C -0.13 -3.72 4.76 30.59 0.15 -3.57 16 18 C -0.11 -2.59 5.78 30.59 0.18 -2.41 16 19 C -0.11 -2.30 5.20 30.59 0.16 -2.14 16 20 C -0.08 -1.81 2.58 -10.80 -0.03 -1.83 16 21 H 0.07 1.64 7.68 -2.39 -0.02 1.63 16 22 C -0.14 -2.63 9.19 71.98 0.66 -1.97 16 23 C -0.10 -2.68 4.22 30.59 0.13 -2.56 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 1.92 6.56 -2.38 -0.02 1.91 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 3.57 5.94 -2.39 -0.01 3.55 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.33 11.54 5.21 -89.69 -0.47 11.07 16 31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 2.40 7.83 -2.39 -0.02 2.38 16 33 H 0.38 9.51 7.59 -74.05 -0.56 8.95 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 2.10 7.60 -2.39 -0.02 2.08 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.50 7.68 -2.39 -0.02 1.48 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -59.81 333.09 1.03 -58.79 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -0.08 Total: 28.99 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 3.25 Total: -33.31 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -2.45 Total: -82.85 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -1.73 Total: -17.82 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -59.81 1.03 -58.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226620828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.689 kcal (2) G-P(sol) polarization free energy of solvation -59.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds