Wall clock time and date at job start Mon Mar 30 2020 06:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46881 * 2 1 4 4 H 1.09002 * 109.47145 * 52.60898 * 3 2 1 5 5 C 1.50704 * 109.47106 * 172.60991 * 3 2 1 6 6 H 1.07993 * 120.00081 * 120.00064 * 5 3 2 7 7 C 1.37882 * 119.99800 * 299.99924 * 5 3 2 8 8 N 1.31511 * 119.99744 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99945 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46971 * 60.00282 * 9 7 5 11 11 H 1.48500 * 109.47088 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47046 * 299.99933 * 9 7 5 13 13 N 1.46906 * 109.47566 * 292.60540 * 3 2 1 14 14 C 1.46899 * 110.99869 * 133.64933 * 13 3 2 15 15 C 1.52994 * 109.47457 * 291.17044 * 14 13 3 16 16 O 1.42897 * 109.47064 * 66.18920 * 15 14 13 17 17 C 1.52998 * 109.46952 * 51.17484 * 14 13 3 18 18 C 1.53000 * 109.47041 * 179.97438 * 17 14 13 19 19 C 1.52998 * 109.47161 * 299.99570 * 18 17 14 20 20 C 1.52994 * 109.47147 * 59.99886 * 19 18 17 21 21 H 1.09001 * 109.46959 * 60.00263 * 20 19 18 22 22 C 1.53000 * 109.47379 * 179.97438 * 20 19 18 23 23 C 1.52998 * 109.47010 * 171.16907 * 14 13 3 24 24 H 1.08996 * 109.47075 * 56.65301 * 1 2 3 25 25 H 1.09002 * 109.46768 * 176.65139 * 1 2 3 26 26 H 1.08999 * 109.46770 * 296.65133 * 1 2 3 27 27 H 1.09003 * 109.46780 * 240.00391 * 2 1 3 28 28 H 1.08989 * 109.47302 * 119.99911 * 2 1 3 29 29 H 0.97007 * 119.99986 * 179.97438 * 8 7 5 30 30 H 1.00904 * 110.99521 * 9.70029 * 13 3 2 31 31 H 1.09001 * 109.47329 * 186.18779 * 15 14 13 32 32 H 1.08994 * 109.47198 * 306.18553 * 15 14 13 33 33 H 0.96707 * 114.00247 * 183.69076 * 16 15 14 34 34 H 1.09006 * 109.46896 * 299.99129 * 17 14 13 35 35 H 1.09001 * 109.47457 * 59.99381 * 17 14 13 36 36 H 1.08993 * 109.47243 * 59.99818 * 18 17 14 37 37 H 1.09011 * 109.46929 * 179.97438 * 18 17 14 38 38 H 1.09003 * 109.47464 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.46977 * 300.00159 * 19 18 17 40 40 H 1.09001 * 109.46614 * 60.00353 * 22 20 19 41 41 H 1.09004 * 109.47345 * 179.97438 * 22 20 19 42 42 H 1.08994 * 109.47697 * 300.00334 * 22 20 19 43 43 H 1.09006 * 109.47421 * 300.00408 * 23 14 13 44 44 H 1.09004 * 109.47112 * 60.00002 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5727 1.9931 0.8165 5 6 3.5359 1.4465 0.1828 6 1 4.1713 1.8804 -0.5750 7 6 4.0932 0.8961 1.3175 8 7 3.3194 0.3673 2.2400 9 14 5.9475 0.9004 1.5437 10 1 6.4429 2.3004 1.5435 11 1 6.2899 0.2550 2.8366 12 1 6.5835 0.1499 0.4314 13 7 1.7013 2.0817 -1.2786 14 6 1.1280 3.4171 -1.0640 15 6 -0.2519 3.2819 -0.4173 16 8 -0.1106 2.7417 0.8981 17 6 2.0458 4.2241 -0.1435 18 6 1.4491 5.6152 0.0795 19 6 1.3148 6.3340 -1.2644 20 6 0.3972 5.5270 -2.1849 21 1 -0.5861 5.4311 -1.7244 22 6 0.2623 6.2461 -3.5286 23 6 0.9933 4.1362 -2.4077 24 1 -0.3633 0.5649 -0.8584 25 1 -0.3633 -1.0260 -0.0600 26 1 -0.3633 0.4610 0.9185 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.7115 -0.0202 3.0382 30 1 1.0758 1.5021 -1.8181 31 1 -0.7233 4.2629 -0.3584 32 1 -0.8714 2.6166 -1.0187 33 1 -0.9507 2.5755 1.3474 34 1 2.1418 3.7118 0.8139 35 1 3.0290 4.3204 -0.6042 36 1 0.4659 5.5192 0.5401 37 1 2.1028 6.1900 0.7357 38 1 0.8901 7.3252 -1.1055 39 1 2.2981 6.4300 -1.7249 40 1 1.2455 6.3425 -3.9893 41 1 -0.3911 5.6710 -4.1846 42 1 -0.1630 7.2370 -3.3695 43 1 1.9765 4.2326 -2.8685 44 1 0.3395 3.5613 -3.0635 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226678737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:19 Heat of formation + Delta-G solvation = -85.827917 kcal Electronic energy + Delta-G solvation = -21396.376948 eV Core-core repulsion = 18540.010725 eV Total energy + Delta-G solvation = -2856.366222 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.00005 -37.67037 -36.54334 -34.33870 -33.28003 -32.55582 -29.99571 -27.89091 -27.09575 -26.57341 -24.52214 -22.99215 -21.79914 -20.81830 -19.38943 -18.53803 -17.85253 -16.80083 -16.44190 -16.14215 -15.65961 -15.23247 -15.08983 -14.81249 -14.55810 -14.05305 -13.86301 -13.63774 -13.18543 -13.01506 -12.94678 -12.88284 -12.71792 -12.60934 -12.39269 -12.26468 -12.07534 -11.83505 -11.67557 -11.54819 -11.34044 -11.16542 -10.94582 -10.83239 -10.64006 -10.55557 -10.17237 -8.63750 -7.91408 -6.00024 1.40423 1.41146 1.48577 2.49529 3.29113 3.47634 3.63650 3.89978 4.06166 4.24663 4.29837 4.38161 4.39776 4.51355 4.65731 4.66285 4.68969 4.73159 4.80240 4.82955 4.88040 4.91379 5.00949 5.11074 5.17885 5.23958 5.29911 5.32769 5.44785 5.47631 5.53193 5.54731 5.56878 5.69021 5.79225 5.79797 6.04443 6.15947 6.55303 6.88293 7.02955 7.15904 7.26708 7.66150 9.08755 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.007774 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.243550 B = 3601.096739 C = 4200.097398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.129 4.129 3 C 0.211 3.789 4 H 0.060 0.940 5 C -0.496 4.496 6 H 0.035 0.965 7 C 0.007 3.993 8 N -0.917 5.917 9 Si 0.939 3.061 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.687 5.687 14 C 0.122 3.878 15 C 0.053 3.947 16 O -0.563 6.563 17 C -0.087 4.087 18 C -0.114 4.114 19 C -0.108 4.108 20 C -0.088 4.088 21 H 0.077 0.923 22 C -0.141 4.141 23 C -0.091 4.091 24 H 0.046 0.954 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.016 0.984 28 H 0.061 0.939 29 H 0.254 0.746 30 H 0.320 0.680 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.371 0.629 34 H 0.041 0.959 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 10.251 -7.464 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.168 4.168 3 C 0.104 3.896 4 H 0.078 0.922 5 C -0.535 4.535 6 H 0.054 0.946 7 C -0.190 4.190 8 N -0.559 5.559 9 Si 0.767 3.233 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.317 5.317 14 C 0.031 3.969 15 C -0.026 4.026 16 O -0.370 6.370 17 C -0.125 4.125 18 C -0.152 4.152 19 C -0.146 4.146 20 C -0.107 4.107 21 H 0.095 0.905 22 C -0.198 4.198 23 C -0.129 4.129 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.138 0.862 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.220 0.780 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.313 10.435 -7.556 15.897 hybrid contribution 0.048 -0.848 0.878 1.222 sum -9.265 9.587 -6.678 14.912 Atomic orbital electron populations 1.21693 0.96154 0.99602 1.00883 1.21748 0.94580 1.00687 0.99798 1.19349 0.92753 0.90004 0.87491 0.92250 1.21622 0.94209 1.35141 1.02537 0.94640 1.25533 1.00858 0.96301 0.96271 1.70003 1.35221 1.41202 1.09476 0.85909 0.82614 0.77880 0.76916 1.20467 1.21068 1.20404 1.60750 1.46454 1.03220 1.21242 1.21003 0.91028 0.90356 0.94560 1.23152 0.97978 0.97255 0.84209 1.86891 1.34515 1.86023 1.29550 1.21304 0.97193 0.95139 0.98817 1.21551 1.00739 0.94977 0.97913 1.21585 0.99735 0.98716 0.94516 1.21170 0.99015 0.93775 0.96726 0.90466 1.21780 1.01804 1.00472 0.95752 1.21490 1.01068 0.95545 0.94793 0.93473 0.94090 0.92924 0.96561 0.92036 0.93680 0.86204 0.92119 0.93944 0.78049 0.94006 0.94955 0.91694 0.92767 0.90369 0.92823 0.93093 0.92108 0.91486 0.92577 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.78 71.98 0.63 -4.17 16 2 C -0.13 -6.30 5.16 30.60 0.16 -6.14 16 3 C 0.21 10.60 0.96 44.17 0.04 10.64 16 4 H 0.06 3.20 3.49 -2.39 -0.01 3.20 16 5 C -0.50 -28.66 8.10 25.60 0.21 -28.45 16 6 H 0.04 2.13 7.81 -2.91 -0.02 2.11 16 7 C 0.01 0.42 5.28 84.66 0.45 0.87 16 8 N -0.92 -54.67 11.29 21.45 0.24 -54.43 16 9 Si 0.94 46.51 29.54 68.60 2.03 48.54 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 13 N -0.69 -29.11 5.91 -452.10 -2.67 -31.78 16 14 C 0.12 4.26 0.69 3.52 0.00 4.26 16 15 C 0.05 1.59 4.83 71.98 0.35 1.93 16 16 O -0.56 -19.50 7.60 -148.98 -1.13 -20.64 16 17 C -0.09 -3.42 3.85 30.59 0.12 -3.30 16 18 C -0.11 -3.40 5.65 30.59 0.17 -3.23 16 19 C -0.11 -2.57 5.20 30.59 0.16 -2.41 16 20 C -0.09 -1.93 2.44 -10.81 -0.03 -1.96 16 21 H 0.08 1.57 6.30 -2.39 -0.02 1.55 16 22 C -0.14 -2.47 9.19 71.98 0.66 -1.80 16 23 C -0.09 -2.55 4.33 30.58 0.13 -2.42 16 24 H 0.05 1.59 5.59 -2.39 -0.01 1.58 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 2.00 6.64 -2.39 -0.02 1.98 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 3.45 5.91 -2.39 -0.01 3.44 16 29 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 30 H 0.32 12.60 6.79 -89.69 -0.61 11.99 16 31 H 0.06 1.53 4.84 -2.39 -0.01 1.52 16 32 H 0.04 1.17 7.20 -2.39 -0.02 1.15 16 33 H 0.37 9.58 8.94 -74.05 -0.66 8.92 16 34 H 0.04 2.04 5.69 -2.38 -0.01 2.02 16 35 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.83 6.57 -2.39 -0.02 1.82 16 37 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -65.25 313.80 1.23 -64.02 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.28 Total: 30.47 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 3.05 Total: -36.18 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -2.43 Total: -86.21 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.13 Total: -20.64 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -65.25 1.23 -64.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226678737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.810 kcal (2) G-P(sol) polarization free energy of solvation -65.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds