Wall clock time and date at job start Mon Mar 30 2020 07:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 N 1.46906 * 109.47059 * 120.00107 * 2 1 3 5 5 C 1.46901 * 110.99817 * 171.13548 * 4 2 1 6 6 C 1.50704 * 109.46748 * 278.87377 * 5 4 2 7 7 H 1.07991 * 120.00049 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99729 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99971 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47503 * 59.99138 * 10 8 6 12 12 H 1.48496 * 109.47213 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46987 * 299.99534 * 10 8 6 14 14 C 1.46906 * 110.99719 * 295.08250 * 4 2 1 15 15 C 1.53007 * 110.05395 * 48.26751 * 14 4 2 16 16 C 1.54370 * 110.06648 * 169.72100 * 14 4 2 17 17 C 1.54894 * 104.19260 * 95.63252 * 16 14 4 18 18 C 1.54883 * 102.74949 * 37.96612 * 17 16 14 19 19 C 1.53870 * 110.03464 * 286.85235 * 14 4 2 20 20 C 1.52994 * 110.03560 * 121.43265 * 19 14 4 21 21 O 1.42895 * 110.03326 * 0.04658 * 19 14 4 22 22 H 1.09004 * 109.46864 * 310.17525 * 1 2 3 23 23 H 1.08994 * 109.46792 * 70.17587 * 1 2 3 24 24 H 1.09001 * 109.47278 * 190.17727 * 1 2 3 25 25 H 1.08997 * 109.47425 * 239.99726 * 2 1 3 26 26 H 1.09002 * 109.46994 * 189.43006 * 3 2 1 27 27 H 1.09001 * 109.47185 * 309.42864 * 3 2 1 28 28 H 1.08998 * 109.47387 * 69.43040 * 3 2 1 29 29 H 1.08998 * 109.47368 * 38.87015 * 5 4 2 30 30 H 1.09002 * 109.47104 * 158.87245 * 5 4 2 31 31 H 0.96999 * 119.99925 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.46853 * 275.44806 * 15 14 4 33 33 H 1.08997 * 109.46935 * 35.44995 * 15 14 4 34 34 H 1.08997 * 109.47112 * 155.44877 * 15 14 4 35 35 H 1.09001 * 110.46725 * 336.96386 * 16 14 4 36 36 H 1.09004 * 110.62152 * 214.37019 * 16 14 4 37 37 H 1.09002 * 110.75422 * 279.65217 * 17 16 14 38 38 H 1.08999 * 110.75468 * 156.28673 * 17 16 14 39 39 H 1.09002 * 110.48468 * 203.37882 * 18 17 16 40 40 H 1.08998 * 110.59987 * 80.79867 * 18 17 16 41 41 H 1.09004 * 109.46781 * 311.57152 * 20 19 14 42 42 H 1.08998 * 109.47451 * 191.57506 * 20 19 14 43 43 H 1.09002 * 109.47210 * 71.57082 * 20 19 14 44 44 H 0.96703 * 114.00444 * 185.74415 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4727 -0.8979 1.1324 6 6 3.7705 -2.1065 0.2829 7 1 2.9614 -2.6662 -0.1623 8 6 5.0760 -2.4981 0.0749 9 7 6.0614 -1.8167 0.6174 10 14 5.4452 -3.9958 -0.9788 11 1 4.9124 -3.7812 -2.3482 12 1 6.9140 -4.2042 -1.0454 13 1 4.8027 -5.1931 -0.3796 14 6 1.6470 0.0381 2.4182 15 6 0.1632 0.4092 2.3745 16 6 1.9400 -0.8252 3.6639 17 6 3.3388 -0.3533 4.1327 18 6 3.2884 1.1732 3.8756 19 6 2.5042 1.3087 2.5540 20 6 1.6046 2.5452 2.6029 21 8 3.4114 1.4070 1.4544 22 1 -0.3633 0.6630 0.7853 23 1 -0.3633 0.3485 -0.9667 24 1 -0.3634 -1.0115 0.1816 25 1 1.8934 -0.5139 -0.8899 26 1 3.1169 1.4471 -0.1684 27 1 1.5458 2.0026 -0.7938 28 1 1.8207 1.9054 0.9621 29 1 3.9440 -0.0192 0.6920 30 1 3.8643 -1.0548 2.1375 31 1 6.9799 -2.0921 0.4708 32 1 0.0373 1.3382 1.8186 33 1 -0.3960 -0.3869 1.8830 34 1 -0.2086 0.5405 3.3906 35 1 1.9632 -1.8821 3.3983 36 1 1.1964 -0.6441 4.4401 37 1 4.1235 -0.8196 3.5369 38 1 3.4817 -0.5620 5.1929 39 1 4.2956 1.5748 3.7644 40 1 2.7634 1.6812 4.6845 41 1 0.8771 2.4975 1.7925 42 1 2.2136 3.4423 2.4919 43 1 1.0819 2.5768 3.5589 44 1 4.0393 2.1389 1.5266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313178213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:15 Heat of formation + Delta-G solvation = 98.880422 kcal Electronic energy + Delta-G solvation = -22394.597465 eV Core-core repulsion = 19546.240797 eV Total energy + Delta-G solvation = -2848.356668 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.22369 -35.65196 -35.00585 -33.18783 -31.49389 -29.90875 -29.35974 -26.84285 -26.13948 -24.41633 -23.35027 -21.77887 -20.75616 -19.65250 -17.92001 -16.26912 -16.16612 -15.75770 -14.95159 -14.75741 -14.29778 -14.07036 -13.75587 -13.35176 -12.92621 -12.63514 -12.34815 -12.03382 -11.79176 -11.43709 -11.19657 -11.06489 -10.94915 -10.83349 -10.71432 -10.49216 -10.46679 -10.36787 -10.29652 -10.04886 -9.65145 -9.59312 -9.23896 -8.94699 -8.82892 -8.13162 -8.11461 -6.69260 -5.79942 -3.77372 3.42916 3.46306 3.50256 4.55978 4.63641 4.92521 5.01845 5.23066 5.32225 5.48888 5.53866 5.61009 5.70260 5.77597 5.79119 5.87376 6.02698 6.06071 6.10805 6.12558 6.20466 6.26565 6.34752 6.38170 6.47835 6.52839 6.58829 6.60471 6.69366 6.71966 6.84611 6.88382 6.95706 7.20512 7.43671 7.75681 8.01531 8.15061 8.21966 8.50489 8.64507 8.91479 9.33511 9.82670 11.28173 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023714 B = 0.008944 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.443761 B = 3129.905023 C = 3519.239814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.087 3.913 3 C -0.198 4.198 4 N -0.509 5.509 5 C 0.168 3.832 6 C -0.497 4.497 7 H 0.053 0.947 8 C 0.052 3.948 9 N -0.902 5.902 10 Si 0.887 3.113 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.280 1.280 14 C 0.123 3.877 15 C -0.168 4.168 16 C -0.108 4.108 17 C -0.134 4.134 18 C -0.141 4.141 19 C 0.080 3.920 20 C -0.184 4.184 21 O -0.495 6.495 22 H 0.092 0.908 23 H 0.032 0.968 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.004 0.996 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.256 0.744 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 8.870 5.798 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.022 4.022 3 C -0.254 4.254 4 N -0.232 5.232 5 C 0.044 3.956 6 C -0.536 4.536 7 H 0.071 0.929 8 C -0.147 4.147 9 N -0.543 5.543 10 Si 0.716 3.284 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.206 1.206 14 C 0.032 3.968 15 C -0.223 4.223 16 C -0.145 4.145 17 C -0.171 4.171 18 C -0.179 4.179 19 C 0.039 3.961 20 C -0.240 4.240 21 O -0.303 6.303 22 H 0.110 0.890 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.022 0.978 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.155 7.862 5.620 13.312 hybrid contribution 1.126 0.316 -0.506 1.275 sum -8.028 8.178 5.113 12.549 Atomic orbital electron populations 1.23343 0.97550 1.02378 1.01480 1.21388 0.92871 0.93135 0.94804 1.24078 1.01785 0.97922 1.01575 1.62613 1.19017 1.43350 0.98263 1.20554 0.80550 0.96315 0.98160 1.21417 0.91344 1.11483 1.29397 0.92885 1.24892 0.96423 0.96858 0.96520 1.69949 0.98843 1.39942 1.45547 0.86742 0.76686 0.83899 0.81076 1.20630 1.21657 1.20555 1.21610 0.92452 0.89425 0.93312 1.23238 0.96411 1.02284 1.00416 1.22427 0.95975 1.01037 0.95100 1.22803 0.99101 0.95003 1.00150 1.22996 0.99894 0.97758 0.97281 1.22713 0.90901 0.95411 0.87107 1.22915 1.01071 0.98093 1.01955 1.88683 1.48278 1.55022 1.38327 0.88987 0.94883 0.92701 0.91012 0.89494 0.97787 0.87997 0.93009 0.94139 0.93457 0.90471 0.89895 0.93945 0.90203 0.92500 0.88466 0.92836 0.91801 0.92264 0.89954 0.93059 0.92308 0.81810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.14 7.56 37.16 0.28 -2.86 16 2 C 0.09 1.74 2.83 -67.71 -0.19 1.54 16 3 C -0.20 -3.55 6.91 37.16 0.26 -3.29 16 4 N -0.51 -10.83 4.26 -211.16 -0.90 -11.73 16 5 C 0.17 4.24 3.28 -4.97 -0.02 4.22 16 6 C -0.50 -14.29 8.85 -34.44 -0.30 -14.60 16 7 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 9 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 10 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.12 2.14 0.69 -130.42 -0.09 2.04 16 15 C -0.17 -2.42 5.77 37.16 0.21 -2.20 16 16 C -0.11 -1.85 5.56 -25.01 -0.14 -1.99 16 17 C -0.13 -2.30 6.34 -24.74 -0.16 -2.46 16 18 C -0.14 -2.14 6.08 -25.08 -0.15 -2.29 16 19 C 0.08 1.25 0.64 -89.51 -0.06 1.20 16 20 C -0.18 -2.32 6.80 37.15 0.25 -2.07 16 21 O -0.49 -8.79 3.34 -35.23 -0.12 -8.91 16 22 H 0.09 1.33 3.13 -75.66 -0.24 1.09 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.93 7.53 -51.93 -0.39 0.54 16 25 H 0.07 1.66 7.69 -51.93 -0.40 1.26 16 26 H 0.09 1.77 5.30 10.86 0.06 1.83 16 27 H 0.00 0.06 8.12 -51.93 -0.42 -0.36 16 28 H 0.10 1.60 0.73 -32.30 -0.02 1.58 16 29 H 0.05 1.40 4.40 -11.28 -0.05 1.35 16 30 H 0.04 1.07 3.69 -51.93 -0.19 0.88 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.08 1.04 2.86 -51.93 -0.15 0.89 16 33 H 0.08 1.25 5.31 -51.93 -0.28 0.97 16 34 H 0.04 0.53 7.52 -51.93 -0.39 0.14 16 35 H 0.08 1.56 8.04 -51.93 -0.42 1.14 16 36 H 0.06 0.83 7.48 -51.93 -0.39 0.45 16 37 H 0.10 2.08 5.49 -51.93 -0.28 1.79 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.97 7.98 -51.93 -0.41 0.56 16 40 H 0.06 0.78 7.65 -51.93 -0.40 0.38 16 41 H 0.08 1.06 4.13 -51.93 -0.21 0.84 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.67 7.70 -51.93 -0.40 0.27 16 44 H 0.33 4.96 8.97 143.42 1.29 6.25 16 LS Contribution 292.77 15.07 4.41 4.41 Total: -1.00 -30.20 292.77 -5.60 -35.80 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.51 Total: 10.53 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -0.20 Total: -21.34 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.16 Total: -37.89 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.12 Total: -8.91 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.20 -5.60 -35.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313178213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.680 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds