Wall clock time and date at job start Mon Mar 30 2020 07:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 N 1.46906 * 109.47059 * 120.00107 * 2 1 3 5 5 C 1.46901 * 110.99817 * 171.13548 * 4 2 1 6 6 C 1.50704 * 109.46748 * 278.87377 * 5 4 2 7 7 H 1.07991 * 120.00049 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99729 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99971 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47503 * 59.99138 * 10 8 6 12 12 H 1.48496 * 109.47213 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46987 * 299.99534 * 10 8 6 14 14 C 1.46906 * 110.99719 * 295.08250 * 4 2 1 15 15 C 1.53007 * 110.05395 * 48.26751 * 14 4 2 16 16 C 1.54370 * 110.06648 * 169.72100 * 14 4 2 17 17 C 1.54894 * 104.19260 * 95.63252 * 16 14 4 18 18 C 1.54883 * 102.74949 * 37.96612 * 17 16 14 19 19 C 1.53870 * 110.03464 * 286.85235 * 14 4 2 20 20 C 1.52994 * 110.03560 * 121.43265 * 19 14 4 21 21 O 1.42895 * 110.03326 * 0.04658 * 19 14 4 22 22 H 1.09004 * 109.46864 * 310.17525 * 1 2 3 23 23 H 1.08994 * 109.46792 * 70.17587 * 1 2 3 24 24 H 1.09001 * 109.47278 * 190.17727 * 1 2 3 25 25 H 1.08997 * 109.47425 * 239.99726 * 2 1 3 26 26 H 1.09002 * 109.46994 * 189.43006 * 3 2 1 27 27 H 1.09001 * 109.47185 * 309.42864 * 3 2 1 28 28 H 1.08998 * 109.47387 * 69.43040 * 3 2 1 29 29 H 1.08998 * 109.47368 * 38.87015 * 5 4 2 30 30 H 1.09002 * 109.47104 * 158.87245 * 5 4 2 31 31 H 0.96999 * 119.99925 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.46853 * 275.44806 * 15 14 4 33 33 H 1.08997 * 109.46935 * 35.44995 * 15 14 4 34 34 H 1.08997 * 109.47112 * 155.44877 * 15 14 4 35 35 H 1.09001 * 110.46725 * 336.96386 * 16 14 4 36 36 H 1.09004 * 110.62152 * 214.37019 * 16 14 4 37 37 H 1.09002 * 110.75422 * 279.65217 * 17 16 14 38 38 H 1.08999 * 110.75468 * 156.28673 * 17 16 14 39 39 H 1.09002 * 110.48468 * 203.37882 * 18 17 16 40 40 H 1.08998 * 110.59987 * 80.79867 * 18 17 16 41 41 H 1.09004 * 109.46781 * 311.57152 * 20 19 14 42 42 H 1.08998 * 109.47451 * 191.57506 * 20 19 14 43 43 H 1.09002 * 109.47210 * 71.57082 * 20 19 14 44 44 H 0.96703 * 114.00444 * 185.74415 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4727 -0.8979 1.1324 6 6 3.7705 -2.1065 0.2829 7 1 2.9614 -2.6662 -0.1623 8 6 5.0760 -2.4981 0.0749 9 7 6.0614 -1.8167 0.6174 10 14 5.4452 -3.9958 -0.9788 11 1 4.9124 -3.7812 -2.3482 12 1 6.9140 -4.2042 -1.0454 13 1 4.8027 -5.1931 -0.3796 14 6 1.6470 0.0381 2.4182 15 6 0.1632 0.4092 2.3745 16 6 1.9400 -0.8252 3.6639 17 6 3.3388 -0.3533 4.1327 18 6 3.2884 1.1732 3.8756 19 6 2.5042 1.3087 2.5540 20 6 1.6046 2.5452 2.6029 21 8 3.4114 1.4070 1.4544 22 1 -0.3633 0.6630 0.7853 23 1 -0.3633 0.3485 -0.9667 24 1 -0.3634 -1.0115 0.1816 25 1 1.8934 -0.5139 -0.8899 26 1 3.1169 1.4471 -0.1684 27 1 1.5458 2.0026 -0.7938 28 1 1.8207 1.9054 0.9621 29 1 3.9440 -0.0192 0.6920 30 1 3.8643 -1.0548 2.1375 31 1 6.9799 -2.0921 0.4708 32 1 0.0373 1.3382 1.8186 33 1 -0.3960 -0.3869 1.8830 34 1 -0.2086 0.5405 3.3906 35 1 1.9632 -1.8821 3.3983 36 1 1.1964 -0.6441 4.4401 37 1 4.1235 -0.8196 3.5369 38 1 3.4817 -0.5620 5.1929 39 1 4.2956 1.5748 3.7644 40 1 2.7634 1.6812 4.6845 41 1 0.8771 2.4975 1.7925 42 1 2.2136 3.4423 2.4919 43 1 1.0819 2.5768 3.5589 44 1 4.0393 2.1389 1.5266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313178213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:14 Heat of formation + Delta-G solvation = 78.500796 kcal Electronic energy + Delta-G solvation = -22395.481192 eV Core-core repulsion = 19546.240797 eV Total energy + Delta-G solvation = -2849.240395 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.58842 -37.08277 -36.37453 -35.13855 -33.18984 -31.31449 -30.66582 -28.40023 -27.92583 -25.65498 -24.84256 -23.55468 -22.19310 -21.10674 -19.28186 -18.33795 -17.59984 -17.19666 -16.73387 -16.04500 -15.90111 -15.60059 -15.07954 -14.78044 -14.31017 -14.09276 -13.89821 -13.68012 -13.35692 -12.96856 -12.73475 -12.62953 -12.54173 -12.42822 -12.25179 -12.04983 -11.94360 -11.74852 -11.70902 -11.45142 -11.33649 -11.15024 -10.84294 -10.71217 -10.31641 -10.17173 -9.51536 -8.41339 -7.98533 -6.07788 1.36092 1.38258 1.45883 2.44902 3.21033 3.32062 3.66946 3.78078 3.93491 4.05625 4.28357 4.40909 4.45175 4.52583 4.55117 4.63162 4.70272 4.76481 4.85899 4.92123 5.00457 5.01726 5.08213 5.10561 5.15350 5.16373 5.25658 5.28868 5.36131 5.45479 5.48734 5.53653 5.57301 5.68017 5.71638 5.94243 5.97775 6.20718 6.39279 6.81423 7.00502 7.13069 7.20326 7.57235 9.02823 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023714 B = 0.008944 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.443761 B = 3129.905023 C = 3519.239814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.082 3.918 3 C -0.188 4.188 4 N -0.525 5.525 5 C 0.184 3.816 6 C -0.519 4.519 7 H 0.035 0.965 8 C 0.003 3.997 9 N -0.928 5.928 10 Si 0.948 3.052 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.275 1.275 14 C 0.111 3.889 15 C -0.166 4.166 16 C -0.107 4.107 17 C -0.135 4.135 18 C -0.134 4.134 19 C 0.075 3.925 20 C -0.178 4.178 21 O -0.522 6.522 22 H 0.123 0.877 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.013 0.987 28 H 0.132 0.868 29 H 0.036 0.964 30 H 0.028 0.972 31 H 0.257 0.743 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 10.602 7.109 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.027 4.027 3 C -0.244 4.244 4 N -0.249 5.249 5 C 0.059 3.941 6 C -0.558 4.558 7 H 0.053 0.947 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.774 3.226 11 H -0.203 1.203 12 H -0.207 1.207 13 H -0.201 1.201 14 C 0.021 3.979 15 C -0.221 4.221 16 C -0.145 4.145 17 C -0.172 4.172 18 C -0.171 4.171 19 C 0.034 3.966 20 C -0.235 4.235 21 O -0.332 6.332 22 H 0.140 0.860 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.032 0.968 28 H 0.149 0.851 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.140 9.600 6.931 16.257 hybrid contribution 1.748 -0.244 -0.871 1.968 sum -9.392 9.356 6.060 14.576 Atomic orbital electron populations 1.23316 0.94425 1.02718 1.03341 1.21396 0.95261 0.93562 0.92461 1.24028 0.99924 0.96829 1.03585 1.62451 1.16262 1.45658 1.00493 1.20195 0.83333 0.94191 0.96417 1.21822 0.91201 1.12821 1.29928 0.94676 1.25629 0.96297 0.99652 0.97774 1.70063 0.98997 1.41320 1.46620 0.85781 0.76810 0.80582 0.79432 1.20262 1.20711 1.20061 1.21852 0.94911 0.89997 0.91167 1.23195 0.93663 1.02585 1.02692 1.22464 0.96852 0.98937 0.96240 1.22684 0.97552 0.96649 1.00292 1.22979 1.00129 0.95937 0.98101 1.22766 0.90995 0.96177 0.86670 1.22822 1.00620 0.96615 1.03415 1.88593 1.49108 1.55923 1.39531 0.85954 0.93756 0.93673 0.96039 0.92385 0.96809 0.85060 0.94690 0.95414 0.93442 0.88892 0.90624 0.90837 0.93799 0.88878 0.93722 0.90851 0.92391 0.88827 0.89790 0.91490 0.89720 0.80555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.73 7.56 71.98 0.54 -5.19 16 2 C 0.08 3.34 2.83 44.91 0.13 3.46 16 3 C -0.19 -6.67 6.91 71.98 0.50 -6.17 16 4 N -0.53 -22.91 4.26 -821.98 -3.50 -26.41 16 5 C 0.18 9.78 3.28 85.56 0.28 10.06 16 6 C -0.52 -31.44 8.85 25.60 0.23 -31.22 16 7 H 0.03 2.18 7.81 -2.92 -0.02 2.16 16 8 C 0.00 0.19 5.46 84.65 0.46 0.65 16 9 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 10 Si 0.95 47.48 29.54 68.60 2.03 49.50 16 11 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 13 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 14 C 0.11 3.69 0.69 4.29 0.00 3.69 16 15 C -0.17 -4.13 5.77 71.98 0.42 -3.72 16 16 C -0.11 -3.58 5.56 31.71 0.18 -3.40 16 17 C -0.13 -4.60 6.34 31.88 0.20 -4.40 16 18 C -0.13 -3.74 6.08 31.67 0.19 -3.55 16 19 C 0.07 2.18 0.64 -10.07 -0.01 2.17 16 20 C -0.18 -3.64 6.80 71.98 0.49 -3.15 16 21 O -0.52 -18.60 3.34 -148.98 -0.50 -19.10 16 22 H 0.12 3.11 3.13 -24.67 -0.08 3.04 16 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.04 1.50 7.53 -2.39 -0.02 1.48 16 25 H 0.02 1.05 7.69 -2.39 -0.02 1.03 16 26 H 0.06 2.44 5.30 52.00 0.28 2.71 16 27 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 28 H 0.13 3.84 0.73 17.08 0.01 3.85 16 29 H 0.04 2.03 4.40 35.90 0.16 2.18 16 30 H 0.03 1.57 3.69 -2.39 -0.01 1.56 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.09 2.03 2.86 -2.39 -0.01 2.03 16 33 H 0.08 2.05 5.31 -2.39 -0.01 2.03 16 34 H 0.07 1.43 7.52 -2.39 -0.02 1.41 16 35 H 0.04 1.76 8.04 -2.39 -0.02 1.74 16 36 H 0.09 2.41 7.48 -2.39 -0.02 2.39 16 37 H 0.04 2.01 5.49 -2.39 -0.01 2.00 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 1.69 7.98 -2.39 -0.02 1.67 16 40 H 0.09 2.01 7.65 -2.39 -0.02 1.99 16 41 H 0.08 1.72 4.13 -2.38 -0.01 1.71 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 1.37 7.70 -2.39 -0.02 1.36 16 44 H 0.34 10.28 8.97 86.82 0.78 11.06 16 Total: -1.00 -69.93 292.77 4.12 -65.81 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 2.20 Total: 28.17 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 3.61 Total: -40.76 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -3.22 Total: -83.62 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.50 Total: -19.10 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -69.93 4.12 -65.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313178213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.307 kcal (2) G-P(sol) polarization free energy of solvation -69.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds