Wall clock time and date at job start Mon Mar 30 2020 06:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46919 * 56.97590 * 3 2 1 5 5 C 1.50705 * 109.47071 * 176.97238 * 3 2 1 6 6 H 1.08002 * 119.99768 * 120.00859 * 5 3 2 7 7 C 1.37872 * 119.99917 * 300.00174 * 5 3 2 8 8 N 1.31519 * 120.00216 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46646 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47342 * 119.99782 * 9 7 5 12 12 H 1.48495 * 109.46932 * 240.00398 * 9 7 5 13 13 N 1.46900 * 109.47483 * 296.97333 * 3 2 1 14 14 C 1.46904 * 110.99805 * 97.46460 * 13 3 2 15 15 H 1.09003 * 109.47150 * 311.84718 * 14 13 3 16 16 C 1.53003 * 109.47136 * 71.84564 * 14 13 3 17 17 C 1.52993 * 109.47053 * 191.84195 * 14 13 3 18 18 C 1.53001 * 109.47047 * 66.51838 * 17 14 13 19 19 O 1.42901 * 112.85374 * 55.32245 * 18 17 14 20 20 C 1.42897 * 114.00678 * 180.02562 * 19 18 17 21 21 C 1.53784 * 113.61574 * 284.12679 * 18 17 14 22 22 C 1.53952 * 87.02203 * 220.04910 * 21 18 17 23 23 C 1.53782 * 87.11390 * 25.36011 * 22 21 18 24 24 H 1.08995 * 109.47226 * 186.48505 * 1 2 3 25 25 H 1.08992 * 109.46964 * 306.49108 * 1 2 3 26 26 H 1.09005 * 109.47088 * 66.49247 * 1 2 3 27 27 H 1.09005 * 109.46978 * 240.00483 * 2 1 3 28 28 H 1.09001 * 109.47484 * 120.00708 * 2 1 3 29 29 H 0.96998 * 119.99863 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99858 * 333.51513 * 13 3 2 31 31 H 1.08994 * 109.47337 * 180.02562 * 16 14 13 32 32 H 1.09007 * 109.47032 * 299.99953 * 16 14 13 33 33 H 1.08997 * 109.47279 * 59.99718 * 16 14 13 34 34 H 1.08995 * 109.47326 * 186.51537 * 17 14 13 35 35 H 1.08995 * 109.47533 * 306.52076 * 17 14 13 36 36 H 1.08996 * 109.47555 * 179.97438 * 20 19 18 37 37 H 1.09004 * 109.46843 * 300.00218 * 20 19 18 38 38 H 1.09002 * 109.46999 * 59.99947 * 20 19 18 39 39 H 1.09003 * 113.61526 * 334.56889 * 21 18 17 40 40 H 1.09003 * 113.61541 * 105.46494 * 21 18 17 41 41 H 1.09007 * 113.53340 * 270.81126 * 22 21 18 42 42 H 1.08998 * 113.74712 * 139.94668 * 22 21 18 43 43 H 1.08994 * 113.61495 * 220.09541 * 23 22 21 44 44 H 1.09001 * 113.68515 * 89.19514 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6331 1.9717 0.8616 5 6 3.5452 1.4431 0.0750 6 1 4.1250 1.8967 -0.7151 7 6 4.1819 0.8646 1.1525 8 7 3.4758 0.3118 2.1145 9 14 6.0476 0.8660 1.2459 10 1 6.6026 1.5458 0.0479 11 1 6.4815 1.5873 2.4692 12 1 6.5417 -0.5335 1.2949 13 7 1.6110 2.1136 -1.2343 14 6 0.3961 2.9075 -1.0069 15 1 -0.3380 2.3037 -0.4732 16 6 0.7427 4.1430 -0.1736 17 6 -0.1855 3.3465 -2.3521 18 6 -0.6816 2.1186 -3.1183 19 8 -1.6210 1.3414 -2.3728 20 6 -2.1004 0.1872 -3.0657 21 6 0.4488 1.2846 -3.7440 22 6 -0.4640 1.1160 -4.9721 23 6 -1.1413 2.4313 -4.5522 24 1 -0.3633 -1.0210 0.1161 25 1 -0.3633 0.6111 0.8261 26 1 -0.3633 0.4099 -0.9424 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.9238 -0.0955 2.8723 30 1 1.4732 1.4471 -1.9792 31 1 -0.1588 4.7319 -0.0045 32 1 1.1572 3.8303 0.7849 33 1 1.4768 4.7468 -0.7072 34 1 -1.0178 4.0296 -2.1826 35 1 0.5857 3.8507 -2.9343 36 1 -2.8078 -0.3487 -2.4330 37 1 -2.5967 0.4959 -3.9858 38 1 -1.2618 -0.4662 -3.3068 39 1 1.3532 1.8580 -3.9476 40 1 0.6477 0.3523 -3.2153 41 1 -1.1204 0.2479 -4.9107 42 1 0.0638 1.1810 -5.9236 43 1 -2.2243 2.4233 -4.6750 44 1 -0.6735 3.3196 -4.9766 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336749779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:13 Heat of formation + Delta-G solvation = -39.113462 kcal Electronic energy + Delta-G solvation = -21169.492728 eV Core-core repulsion = 18315.152197 eV Total energy + Delta-G solvation = -2854.340532 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.63253 -38.56655 -35.94663 -35.21693 -33.43996 -30.88637 -29.68145 -28.31548 -27.02795 -26.64765 -24.68575 -23.63830 -21.58849 -21.01003 -20.54446 -18.36568 -17.57326 -16.86950 -16.71649 -16.37584 -16.03524 -15.43391 -15.09007 -14.58944 -14.55568 -14.33566 -13.78604 -13.52794 -13.42251 -13.12674 -13.05038 -12.96777 -12.89009 -12.80542 -12.55475 -12.52068 -12.26743 -11.93563 -11.84512 -11.67322 -11.59873 -11.38000 -11.15787 -10.89315 -10.64949 -10.37434 -10.19701 -8.74269 -8.03224 -6.14175 1.40828 1.42450 1.54815 2.46167 2.83391 3.22482 3.54436 3.59666 3.76569 3.87821 3.97432 4.32241 4.40205 4.46428 4.52160 4.54223 4.62147 4.67197 4.74545 4.79980 4.81573 4.85339 4.87277 4.95488 5.01307 5.07086 5.10064 5.13054 5.14436 5.18739 5.27730 5.34926 5.42036 5.51907 5.54624 5.63596 5.79270 5.94298 6.40070 6.41722 6.80549 6.99910 7.11124 7.55846 9.00799 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027182 B = 0.006248 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.841805 B = 4480.437340 C = 4578.871222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.225 3.775 4 H -0.002 1.002 5 C -0.508 4.508 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.923 5.923 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.685 5.685 14 C 0.079 3.921 15 H 0.031 0.969 16 C -0.135 4.135 17 C -0.087 4.087 18 C 0.088 3.912 19 O -0.375 6.375 20 C 0.016 3.984 21 C -0.175 4.175 22 C -0.150 4.150 23 C -0.151 4.151 24 H 0.042 0.958 25 H 0.027 0.973 26 H 0.081 0.919 27 H 0.026 0.974 28 H 0.061 0.939 29 H 0.258 0.742 30 H 0.334 0.666 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 2.491 -13.530 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.116 3.884 4 H 0.016 0.984 5 C -0.547 4.547 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.564 5.564 9 Si 0.782 3.218 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.320 5.320 14 C -0.031 4.031 15 H 0.049 0.951 16 C -0.192 4.192 17 C -0.124 4.124 18 C 0.048 3.952 19 O -0.294 6.294 20 C -0.080 4.080 21 C -0.213 4.213 22 C -0.187 4.187 23 C -0.188 4.188 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.100 0.900 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.156 0.844 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.815 2.995 -13.106 17.254 hybrid contribution 0.627 -1.135 0.618 1.437 sum -10.188 1.860 -12.488 16.223 Atomic orbital electron populations 1.21987 0.96453 0.99941 1.02048 1.22016 0.94196 1.01029 1.00458 1.18890 0.93374 0.88736 0.87362 0.98389 1.21605 0.92938 1.34825 1.05285 0.93046 1.25712 1.02406 0.95491 0.95550 1.70037 1.36256 1.39653 1.10490 0.85540 0.80892 0.77533 0.77834 1.19334 1.20910 1.20738 1.60917 1.32338 1.29770 1.08973 1.21520 0.90956 0.94662 0.95965 0.95105 1.21772 1.01007 0.97524 0.98933 1.21569 1.00247 0.95501 0.95104 1.22680 0.89434 0.91734 0.91371 1.87909 1.60171 1.38869 1.42420 1.23190 0.98834 0.87595 0.98373 1.23695 0.98870 1.00547 0.98217 1.23327 0.98735 0.98644 0.97953 1.23493 1.01573 0.99023 0.94727 0.93891 0.95412 0.90013 0.95532 0.92026 0.93288 0.84364 0.91221 0.95606 0.92484 0.89942 0.89322 0.89396 0.91570 0.93631 0.88888 0.92665 0.88355 0.90047 0.90143 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.17 8.46 71.98 0.61 -5.56 16 2 C -0.14 -6.85 5.09 30.59 0.16 -6.69 16 3 C 0.23 11.74 1.98 44.17 0.09 11.83 16 4 H 0.00 -0.10 6.26 -2.39 -0.01 -0.12 16 5 C -0.51 -29.18 8.84 25.60 0.23 -28.95 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.33 5.30 84.65 0.45 0.78 16 8 N -0.92 -55.06 11.30 21.45 0.24 -54.82 16 9 Si 0.96 45.42 29.54 68.60 2.03 47.44 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 N -0.69 -29.49 5.85 -473.30 -2.77 -32.26 16 14 C 0.08 2.91 1.93 44.91 0.09 2.99 16 15 H 0.03 1.25 4.97 -2.39 -0.01 1.24 16 16 C -0.13 -4.92 9.24 71.98 0.67 -4.25 16 17 C -0.09 -2.43 4.59 30.59 0.14 -2.29 16 18 C 0.09 2.24 1.31 -10.26 -0.01 2.22 16 19 O -0.37 -10.44 7.72 -148.98 -1.15 -11.59 16 20 C 0.02 0.33 9.04 113.37 1.02 1.36 16 21 C -0.18 -4.56 4.53 31.18 0.14 -4.42 16 22 C -0.15 -2.82 7.30 31.18 0.23 -2.59 16 23 C -0.15 -2.84 6.90 31.12 0.21 -2.62 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.03 1.20 7.80 -2.39 -0.02 1.18 16 26 H 0.08 3.10 3.93 -2.38 -0.01 3.09 16 27 H 0.03 1.29 8.07 -2.38 -0.02 1.27 16 28 H 0.06 3.49 5.99 -2.39 -0.01 3.48 16 29 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.33 13.42 3.82 -89.69 -0.34 13.08 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.02 1.09 6.70 -2.38 -0.02 1.08 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.09 2.37 8.08 -2.39 -0.02 2.35 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.10 5.85 -2.39 -0.01 1.08 16 38 H 0.05 0.98 5.86 -2.39 -0.01 0.97 16 39 H 0.09 2.54 7.85 -2.39 -0.02 2.52 16 40 H 0.05 1.66 6.81 -2.39 -0.02 1.65 16 41 H 0.10 1.67 4.83 -2.38 -0.01 1.66 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.36 7.48 -2.39 -0.02 1.34 16 44 H 0.10 1.70 8.10 -2.39 -0.02 1.68 16 Total: -1.00 -63.97 317.61 3.00 -60.97 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.63 Total: 28.46 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 4.01 Total: -38.20 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.52 Total: -87.08 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.15 Total: -11.59 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -63.97 3.00 -60.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336749779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.859 kcal (2) G-P(sol) polarization free energy of solvation -63.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds