Wall clock time and date at job start Mon Mar 30 2020 07:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47162 * 2 1 4 4 N 1.46895 * 109.47541 * 120.00204 * 2 1 3 5 5 C 1.46904 * 111.00273 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47452 * 286.58715 * 5 4 2 7 7 O 1.42899 * 109.47156 * 66.52947 * 6 5 4 8 8 C 1.42895 * 113.99767 * 184.82138 * 7 6 5 9 9 C 1.50703 * 109.47060 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00055 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99968 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00312 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99830 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47090 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46793 * 119.99868 * 13 11 9 16 16 H 1.48499 * 109.47166 * 239.99691 * 13 11 9 17 17 C 1.46904 * 111.00026 * 304.00605 * 4 2 1 18 18 C 1.54270 * 110.02992 * 277.84354 * 17 4 2 19 19 C 1.54963 * 104.15987 * 217.13185 * 18 17 4 20 20 C 1.54893 * 102.77393 * 37.89171 * 19 18 17 21 21 C 1.53872 * 110.03365 * 160.62626 * 17 4 2 22 22 H 1.08997 * 109.46841 * 308.69516 * 1 2 3 23 23 H 1.09001 * 109.47408 * 68.70379 * 1 2 3 24 24 H 1.09009 * 109.46845 * 188.70315 * 1 2 3 25 25 H 1.09000 * 109.46985 * 240.00310 * 2 1 3 26 26 H 1.08998 * 109.47111 * 172.12411 * 3 2 1 27 27 H 1.09004 * 109.47237 * 292.12632 * 3 2 1 28 28 H 1.08995 * 109.46914 * 52.11997 * 3 2 1 29 29 H 1.09003 * 109.46769 * 46.58629 * 5 4 2 30 30 H 1.08999 * 109.47607 * 166.57901 * 5 4 2 31 31 H 1.08998 * 109.47319 * 186.53755 * 6 5 4 32 32 H 1.09000 * 109.46197 * 306.53375 * 6 5 4 33 33 H 1.09005 * 109.47432 * 300.00045 * 8 7 6 34 34 H 1.08999 * 109.47223 * 60.00414 * 8 7 6 35 35 H 0.96996 * 120.00673 * 179.97438 * 12 11 9 36 36 H 1.08994 * 110.01395 * 39.23500 * 17 4 2 37 37 H 1.08993 * 110.48742 * 335.78656 * 18 17 4 38 38 H 1.09004 * 110.48093 * 98.42938 * 18 17 4 39 39 H 1.08997 * 110.72348 * 279.57791 * 19 18 17 40 40 H 1.09000 * 110.92125 * 156.29648 * 19 18 17 41 41 H 1.08995 * 110.48674 * 203.40187 * 20 19 18 42 42 H 1.09002 * 110.59894 * 80.81389 * 20 19 18 43 43 H 1.08998 * 110.03378 * 238.57227 * 21 17 4 44 44 H 1.09005 * 110.03245 * 0.02562 * 21 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.4882 -0.7115 1.2336 6 6 4.0097 -1.7094 0.1975 7 8 3.6992 -1.2387 -1.1155 8 6 4.0474 -2.1522 -2.1577 9 6 3.6783 -1.5565 -3.4919 10 1 3.2230 -0.5783 -3.5391 11 6 3.9210 -2.2606 -4.6522 12 7 4.4750 -3.4520 -4.5947 13 14 3.4628 -1.5225 -6.3059 14 1 2.8592 -0.1816 -6.0992 15 1 4.6814 -1.3923 -7.1445 16 1 2.4843 -2.4066 -6.9886 17 6 1.4721 -0.0840 2.4191 18 6 2.2984 1.1601 2.8058 19 6 2.3384 1.1222 4.3545 20 6 2.4735 -0.3909 4.6567 21 6 1.5830 -1.0697 3.5955 22 1 -0.3633 0.6425 0.8021 23 1 -0.3634 0.3732 -0.9575 24 1 -0.3633 -1.0159 0.1555 25 1 1.8933 -0.5138 -0.8900 26 1 3.1208 1.4457 0.1408 27 1 1.7962 1.9141 -0.9520 28 1 1.5662 1.9954 0.8111 29 1 3.8699 0.2833 1.0040 30 1 3.8248 -1.0095 2.2265 31 1 5.0900 -1.8099 0.3015 32 1 3.5375 -2.6787 0.3572 33 1 5.1202 -2.3435 -2.1300 34 1 3.5076 -3.0884 -2.0157 35 1 4.6454 -3.9475 -5.4109 36 1 0.4300 0.1940 2.2619 37 1 3.3061 1.0911 2.3964 38 1 1.8057 2.0682 2.4583 39 1 1.4139 1.5189 4.7740 40 1 3.2001 1.6706 4.7351 41 1 2.1091 -0.6137 5.6595 42 1 3.5092 -0.7127 4.5479 43 1 0.5948 -1.2694 4.0097 44 1 2.0436 -1.9994 3.2614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339032011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:36 Heat of formation + Delta-G solvation = -66.985432 kcal Electronic energy + Delta-G solvation = -20472.947413 eV Core-core repulsion = 17617.398262 eV Total energy + Delta-G solvation = -2855.549151 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99111 -38.44129 -36.60942 -34.91872 -32.91686 -30.52852 -29.72925 -28.93560 -27.87508 -27.08182 -24.53560 -23.40861 -21.66872 -21.32096 -19.54469 -18.53792 -17.66099 -17.44171 -17.07155 -16.46357 -15.99534 -15.53336 -15.43143 -14.98231 -14.61700 -14.46438 -14.02735 -13.64931 -13.44644 -13.28241 -13.02997 -12.85495 -12.68722 -12.58491 -12.44841 -12.25498 -12.16296 -11.95467 -11.84382 -11.78294 -11.67022 -11.36824 -11.25652 -11.20310 -11.07852 -10.75438 -10.05809 -9.01486 -8.30712 -6.42337 1.39438 1.40684 1.55127 2.34843 3.03028 3.03434 3.26211 3.78058 3.83326 3.94128 4.19974 4.25514 4.29324 4.38304 4.49738 4.58093 4.59300 4.64731 4.69267 4.76630 4.79020 4.80182 4.86056 4.89021 4.93005 4.96141 4.99520 5.10366 5.14333 5.21355 5.25173 5.28207 5.41624 5.46553 5.48677 5.52673 5.56710 5.65032 5.99082 6.30603 6.47163 6.57338 6.85866 7.29624 8.82021 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.034373 B = 0.004867 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.400690 B = 5751.218285 C = 6121.766897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.062 3.938 3 C -0.173 4.173 4 N -0.528 5.528 5 C 0.065 3.935 6 C 0.057 3.943 7 O -0.391 6.391 8 C 0.210 3.790 9 C -0.539 4.539 10 H 0.062 0.938 11 C 0.006 3.994 12 N -0.932 5.932 13 Si 0.980 3.020 14 H -0.264 1.264 15 H -0.273 1.273 16 H -0.273 1.273 17 C 0.071 3.929 18 C -0.161 4.161 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.116 4.116 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.043 0.957 32 H 0.036 0.964 33 H -0.019 1.019 34 H -0.020 1.020 35 H 0.269 0.731 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 8.895 17.367 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.046 4.046 3 C -0.232 4.232 4 N -0.252 5.252 5 C -0.062 4.062 6 C -0.020 4.020 7 O -0.311 6.311 8 C 0.135 3.865 9 C -0.577 4.577 10 H 0.080 0.920 11 C -0.192 4.192 12 N -0.572 5.572 13 Si 0.803 3.197 14 H -0.188 1.188 15 H -0.198 1.198 16 H -0.198 1.198 17 C -0.037 4.037 18 C -0.200 4.200 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.154 4.154 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.054 0.946 33 H -0.002 1.002 34 H -0.002 1.002 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.329 8.419 17.200 20.169 hybrid contribution 0.566 0.319 -1.035 1.222 sum -5.763 8.738 16.165 19.258 Atomic orbital electron populations 1.21841 0.94037 1.01772 1.01670 1.21897 0.95562 0.93022 0.94088 1.22547 1.01096 0.97669 1.01866 1.62443 1.07129 1.53385 1.02193 1.22170 0.88760 0.97713 0.97578 1.22602 0.97752 0.97705 0.83977 1.87831 1.83716 1.45113 1.14462 1.19754 0.92498 0.88295 0.85923 1.21371 1.41309 1.04052 0.90936 0.92024 1.25931 0.94555 0.95130 1.03592 1.70079 1.43762 1.13344 1.29983 0.85179 0.78271 0.78670 0.77557 1.18759 1.19781 1.19783 1.22572 0.99141 0.92664 0.89288 1.23359 1.00927 0.98544 0.97162 1.22450 1.02144 0.96362 0.94595 1.22367 0.99572 0.95233 0.98799 1.22182 1.00483 0.98323 0.94405 0.91343 0.92571 0.92861 0.90333 0.93343 0.93503 0.90767 0.93214 0.88245 0.93859 0.94560 1.00174 1.00218 0.92172 0.89418 0.91542 0.91256 0.90784 0.91243 0.90591 0.92107 0.91005 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.65 71.98 0.62 -3.13 16 2 C 0.06 2.04 2.67 44.92 0.12 2.16 16 3 C -0.17 -5.08 7.82 71.98 0.56 -4.52 16 4 N -0.53 -15.67 4.31 -841.68 -3.63 -19.29 16 5 C 0.07 1.98 3.86 86.30 0.33 2.32 16 6 C 0.06 2.21 6.24 71.98 0.45 2.66 16 7 O -0.39 -19.03 7.34 -148.98 -1.09 -20.13 16 8 C 0.21 12.03 5.69 71.24 0.41 12.43 16 9 C -0.54 -32.29 9.43 25.60 0.24 -32.05 16 10 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 11 C 0.01 0.36 5.46 84.66 0.46 0.82 16 12 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 13 Si 0.98 44.88 29.54 68.60 2.03 46.91 16 14 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 C 0.07 1.62 2.55 45.64 0.12 1.73 16 18 C -0.16 -3.21 4.40 31.70 0.14 -3.07 16 19 C -0.12 -1.85 6.91 31.91 0.22 -1.63 16 20 C -0.12 -1.99 6.67 31.67 0.21 -1.77 16 21 C -0.12 -2.31 5.89 31.32 0.18 -2.13 16 22 H 0.07 1.54 6.37 -2.39 -0.02 1.53 16 23 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.08 3.39 5.39 -2.39 -0.01 3.38 16 26 H 0.05 1.52 5.65 -2.39 -0.01 1.50 16 27 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.07 1.78 5.18 -2.39 -0.01 1.77 16 29 H 0.05 1.54 4.27 -2.39 -0.01 1.53 16 30 H 0.10 2.54 6.82 -2.39 -0.02 2.52 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H -0.02 -1.17 8.14 -2.38 -0.02 -1.19 16 34 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.09 1.93 5.54 -2.39 -0.01 1.92 16 37 H 0.07 1.49 4.99 -2.39 -0.01 1.48 16 38 H 0.07 1.33 6.27 -2.38 -0.01 1.32 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.02 8.00 -2.39 -0.02 1.01 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.06 1.39 7.63 -2.38 -0.02 1.38 16 Total: -1.00 -64.72 323.81 2.61 -62.11 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.96 Total: 13.19 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 4.07 Total: -26.18 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -3.34 Total: -75.89 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -1.09 Total: -20.13 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.72 2.61 -62.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339032011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.879 kcal (2) G-P(sol) polarization free energy of solvation -64.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds