Wall clock time and date at job start Mon Mar 30 2020 06:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46912 * 2 1 4 4 H 1.09009 * 109.47059 * 57.21434 * 3 2 1 5 5 C 1.50700 * 109.47359 * 177.21343 * 3 2 1 6 6 H 1.08000 * 119.99959 * 119.99716 * 5 3 2 7 7 C 1.37878 * 119.99845 * 300.27939 * 5 3 2 8 8 N 1.31508 * 120.00154 * 359.72153 * 7 5 3 9 9 Si 1.86796 * 119.99697 * 179.72090 * 7 5 3 10 10 H 1.48501 * 109.47378 * 60.00430 * 9 7 5 11 11 H 1.48497 * 109.47042 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47419 * 299.99999 * 9 7 5 13 13 N 1.46900 * 109.47509 * 297.21978 * 3 2 1 14 14 C 1.47637 * 110.99578 * 296.11877 * 13 3 2 15 15 C 1.50901 * 108.77034 * 153.51097 * 14 13 3 16 16 C 1.53615 * 111.71594 * 91.01066 * 15 14 13 17 17 O 1.44084 * 112.55150 * 318.63379 * 16 15 14 18 18 C 1.40623 * 116.73313 * 318.11590 * 17 16 15 19 19 H 1.09008 * 109.58581 * 333.97365 * 18 17 16 20 20 C 1.52998 * 109.52945 * 213.79976 * 18 17 16 21 21 C 1.53001 * 109.47370 * 60.34993 * 20 18 17 22 22 C 1.52997 * 109.47062 * 180.35229 * 20 18 17 23 23 C 1.40444 * 111.00382 * 167.82100 * 13 3 2 24 24 H 1.08999 * 109.47863 * 59.99794 * 1 2 3 25 25 H 1.08998 * 109.46995 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47365 * 299.99838 * 1 2 3 27 27 H 1.09005 * 109.47133 * 240.00874 * 2 1 3 28 28 H 1.08991 * 109.47547 * 120.00165 * 2 1 3 29 29 H 0.96998 * 120.00541 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.59260 * 273.29336 * 14 13 3 31 31 H 1.09000 * 109.58888 * 33.72611 * 14 13 3 32 32 H 1.09002 * 109.02486 * 330.43094 * 15 14 13 33 33 H 1.09000 * 109.03238 * 211.58870 * 15 14 13 34 34 H 1.09002 * 108.86603 * 197.84843 * 16 15 14 35 35 H 1.08993 * 108.86898 * 79.43310 * 16 15 14 36 36 H 1.09000 * 109.47098 * 300.35074 * 20 18 17 37 37 H 1.09000 * 109.46944 * 59.99986 * 21 20 18 38 38 H 1.08999 * 109.46812 * 179.97438 * 21 20 18 39 39 H 1.08996 * 109.46835 * 300.00083 * 21 20 18 40 40 H 1.09002 * 109.47407 * 180.02562 * 22 20 18 41 41 H 1.08996 * 109.47434 * 299.99601 * 22 20 18 42 42 H 1.09004 * 109.47779 * 59.99800 * 22 20 18 43 43 H 1.08996 * 109.03085 * 308.86675 * 23 13 3 44 44 H 1.08997 * 109.03745 * 67.80091 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6363 1.9706 0.8640 5 6 3.5453 1.4432 0.0691 6 1 4.1220 1.8979 -0.7228 7 6 4.1865 0.8582 1.1404 8 7 3.4843 0.3045 2.1046 9 14 6.0527 0.8522 1.2221 10 1 6.5526 2.2505 1.2248 11 1 6.4915 0.1679 2.4648 12 1 6.5976 0.1340 0.0421 13 7 1.6059 2.1154 -1.2316 14 6 2.2093 1.4824 -2.4211 15 6 1.3052 1.7157 -3.6065 16 6 1.6760 3.0021 -4.3597 17 8 1.9984 4.0894 -3.4708 18 6 1.1775 4.2466 -2.3400 19 1 0.1903 3.8322 -2.5446 20 6 1.0484 5.7337 -2.0045 21 6 0.4188 6.4709 -3.1882 22 6 0.1622 5.9027 -0.7687 23 6 1.8122 3.5020 -1.1471 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.9354 -0.1074 2.8581 30 1 3.1866 1.9247 -2.6143 31 1 2.3180 0.4115 -2.2496 32 1 0.2751 1.7919 -3.2582 33 1 1.3868 0.8688 -4.2879 34 1 0.8354 3.2977 -4.9875 35 1 2.5365 2.8014 -4.9978 36 1 2.0363 6.1477 -1.8025 37 1 -0.5691 6.0569 -3.3902 38 1 0.3264 7.5302 -2.9489 39 1 1.0502 6.3505 -4.0685 40 1 0.0698 6.9622 -0.5299 41 1 -0.8257 5.4887 -0.9707 42 1 0.6107 5.3776 0.0747 43 1 1.3706 3.8714 -0.2216 44 1 2.8837 3.7019 -1.1340 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378864852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:29 Heat of formation + Delta-G solvation = -55.648277 kcal Electronic energy + Delta-G solvation = -21081.485405 eV Core-core repulsion = 18226.427870 eV Total energy + Delta-G solvation = -2855.057535 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.46857 -36.61799 -35.10390 -32.98270 -31.51259 -31.21425 -27.79961 -26.94390 -25.76086 -25.49035 -23.02548 -21.17344 -20.62747 -19.75014 -18.74968 -16.66369 -16.16461 -15.73990 -14.87422 -14.68348 -14.66852 -13.90451 -13.79227 -13.43539 -12.90757 -12.71097 -12.31751 -12.06478 -11.99046 -11.77844 -11.62131 -11.51480 -11.19237 -11.11566 -10.86652 -10.83505 -10.78954 -10.59346 -10.26593 -10.26080 -9.89600 -9.79236 -9.61131 -9.37379 -9.13037 -8.73687 -8.34260 -7.02457 -5.96422 -4.09534 3.29681 3.34483 3.37975 4.07512 4.41729 4.91897 5.12903 5.17182 5.27359 5.33422 5.41235 5.47875 5.64888 5.73315 5.77325 5.93943 5.96680 5.99533 6.03755 6.12000 6.20514 6.26842 6.33291 6.38505 6.44245 6.47085 6.53209 6.63338 6.67337 6.75064 6.89520 6.92488 7.13824 7.19846 7.40569 7.65492 7.78776 7.85456 8.03279 8.19909 8.44678 8.65154 9.01284 9.58095 11.02470 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.007099 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.640364 B = 3943.461591 C = 4149.433681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.221 3.779 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.551 5.551 14 C 0.074 3.926 15 C -0.154 4.154 16 C 0.070 3.930 17 O -0.386 6.386 18 C 0.101 3.899 19 H 0.058 0.942 20 C -0.093 4.093 21 C -0.140 4.140 22 C -0.147 4.147 23 C 0.058 3.942 24 H 0.047 0.953 25 H 0.024 0.976 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.092 0.908 29 H 0.261 0.739 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.419 6.252 -8.859 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.115 3.885 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.274 5.274 14 C -0.053 4.053 15 C -0.192 4.192 16 C -0.007 4.007 17 O -0.305 6.305 18 C 0.042 3.958 19 H 0.076 0.924 20 C -0.112 4.112 21 C -0.198 4.198 22 C -0.204 4.204 23 C -0.073 4.073 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.728 6.218 -8.750 12.669 hybrid contribution 1.760 -0.174 0.213 1.781 sum -4.968 6.045 -8.537 11.580 Atomic orbital electron populations 1.21698 0.98928 0.98301 1.00513 1.21634 0.92143 0.99307 1.01888 1.19233 0.92634 0.90901 0.85734 0.94643 1.21734 0.92713 1.37168 1.06376 0.92719 1.24897 0.97869 0.95083 0.95551 1.69858 1.35009 1.37733 1.09955 0.86748 0.86320 0.78198 0.77280 1.20390 1.21275 1.20373 1.59646 1.60572 1.02564 1.04617 1.21496 0.94780 1.00123 0.88931 1.22116 1.01976 0.96866 0.98265 1.22830 0.99735 0.86881 0.91241 1.87407 1.56854 1.49853 1.36388 1.22106 0.93767 0.93957 0.85936 0.92367 1.21144 0.99965 0.94628 0.95427 1.21746 1.00317 0.99252 0.98454 1.21890 0.99607 1.01242 0.97641 1.21432 0.99091 0.89689 0.97039 0.93411 0.95702 0.94334 0.94809 0.89025 0.92884 0.94616 0.90465 0.91046 0.91623 0.94273 0.90357 0.90769 0.93294 0.93189 0.92256 0.92810 0.92723 0.91560 0.90984 0.95227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.78 37.16 0.36 -2.38 16 2 C -0.11 -2.60 5.11 -26.73 -0.14 -2.74 16 3 C 0.22 5.37 1.69 -68.86 -0.12 5.26 16 4 H 0.04 0.96 7.81 -51.92 -0.41 0.56 16 5 C -0.54 -14.50 7.32 -34.44 -0.25 -14.75 16 6 H 0.05 1.51 6.41 -52.49 -0.34 1.17 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.89 -24.86 11.29 55.43 0.63 -24.23 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.55 -11.47 3.37 -232.95 -0.79 -12.25 16 14 C 0.07 1.46 4.17 -4.47 -0.02 1.44 16 15 C -0.15 -2.41 5.41 -27.47 -0.15 -2.55 16 16 C 0.07 1.02 6.72 37.48 0.25 1.27 16 17 O -0.39 -6.59 9.09 -34.27 -0.31 -6.90 16 18 C 0.10 1.66 1.80 -26.07 -0.05 1.62 16 19 H 0.06 0.96 7.11 -51.92 -0.37 0.59 16 20 C -0.09 -1.31 2.72 -90.62 -0.25 -1.56 16 21 C -0.14 -1.70 9.05 37.16 0.34 -1.37 16 22 C -0.15 -1.89 8.90 37.16 0.33 -1.56 16 23 C 0.06 1.15 4.23 -6.50 -0.03 1.12 16 24 H 0.05 0.92 7.68 -51.93 -0.40 0.52 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.78 6.04 -51.93 -0.31 0.46 16 28 H 0.09 2.41 5.99 -51.93 -0.31 2.09 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.04 0.77 6.91 -51.93 -0.36 0.41 16 31 H 0.08 1.60 5.68 -51.93 -0.29 1.31 16 32 H 0.07 1.15 7.39 -51.93 -0.38 0.76 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.75 7.70 -51.93 -0.40 0.35 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.94 6.09 -51.93 -0.32 0.62 16 43 H 0.07 1.43 5.36 -51.93 -0.28 1.15 16 44 H 0.03 0.68 7.26 -51.93 -0.38 0.30 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -27.44 323.97 -8.32 -35.76 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.91 Total: 0.88 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 0.19 Total: -14.45 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.16 Total: -36.49 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.31 Total: -6.90 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.44 -8.32 -35.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378864852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.891 kcal (2) G-P(sol) polarization free energy of solvation -27.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds