Wall clock time and date at job start Mon Mar 30 2020 06:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47149 * 2 1 4 4 H 1.09003 * 109.47364 * 306.17114 * 3 2 1 5 5 C 1.50700 * 109.47351 * 186.17051 * 3 2 1 6 6 H 1.07993 * 120.00051 * 244.70272 * 5 3 2 7 7 C 1.37873 * 119.99616 * 64.69574 * 5 3 2 8 8 N 1.31516 * 120.00041 * 195.80623 * 7 5 3 9 9 Si 1.86800 * 120.00163 * 15.81508 * 7 5 3 10 10 H 1.48499 * 109.47224 * 93.88976 * 9 7 5 11 11 H 1.48503 * 109.46815 * 213.89017 * 9 7 5 12 12 H 1.48500 * 109.47241 * 333.88562 * 9 7 5 13 13 N 1.46907 * 109.46868 * 66.16952 * 3 2 1 14 14 C 1.46901 * 111.00138 * 264.27587 * 13 3 2 15 15 C 1.52997 * 109.46886 * 275.05854 * 14 13 3 16 16 H 1.08997 * 109.47764 * 57.37201 * 15 14 13 17 17 C 1.52998 * 109.47311 * 297.36568 * 15 14 13 18 18 C 1.52999 * 109.47594 * 300.00856 * 17 15 14 19 19 C 1.53005 * 109.46849 * 299.99722 * 18 17 15 20 20 C 1.53002 * 109.47264 * 59.99575 * 19 18 17 21 21 H 1.09002 * 109.46741 * 60.00335 * 20 19 18 22 22 C 1.52996 * 109.47117 * 180.02562 * 20 19 18 23 23 O 1.42898 * 109.47031 * 295.00290 * 22 20 19 24 24 C 1.52999 * 109.47380 * 300.00542 * 20 19 18 25 25 H 1.08994 * 109.47324 * 59.19887 * 1 2 3 26 26 H 1.09000 * 109.47281 * 179.20526 * 1 2 3 27 27 H 1.09002 * 109.47170 * 299.19812 * 1 2 3 28 28 H 1.08994 * 109.46824 * 240.00305 * 2 1 3 29 29 H 1.08997 * 109.47016 * 120.00503 * 2 1 3 30 30 H 0.96996 * 120.00226 * 180.02562 * 8 7 5 31 31 H 1.00895 * 110.99655 * 28.23510 * 13 3 2 32 32 H 1.08998 * 109.46771 * 155.05742 * 14 13 3 33 33 H 1.09000 * 109.47085 * 35.05747 * 14 13 3 34 34 H 1.09002 * 109.47150 * 180.02562 * 17 15 14 35 35 H 1.08999 * 109.46544 * 60.00939 * 17 15 14 36 36 H 1.09002 * 109.46874 * 59.99352 * 18 17 15 37 37 H 1.08992 * 109.47402 * 179.97438 * 18 17 15 38 38 H 1.08994 * 109.47235 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.46968 * 300.00049 * 19 18 17 40 40 H 1.08991 * 109.47349 * 55.00572 * 22 20 19 41 41 H 1.09001 * 109.46937 * 175.00662 * 22 20 19 42 42 H 0.96705 * 113.99738 * 180.02562 * 23 22 20 43 43 H 1.08998 * 109.46948 * 179.97438 * 24 20 19 44 44 H 1.09002 * 109.47014 * 299.99625 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5893 1.9872 -0.8296 5 6 3.5392 1.4453 -0.1527 6 1 4.1628 1.8153 0.6475 7 6 4.1147 0.9752 -1.3141 8 7 5.3969 0.6840 -1.3416 9 14 3.0732 0.7521 -2.8487 10 1 3.1631 1.9727 -3.6897 11 1 3.5697 -0.4169 -3.6182 12 1 1.6589 0.5231 -2.4581 13 7 1.6756 2.0906 1.2670 14 6 0.4285 2.8545 1.1280 15 6 0.7424 4.2479 0.5797 16 1 1.2641 4.1546 -0.3728 17 6 1.6283 5.0000 1.5749 18 6 0.8961 5.1310 2.9119 19 6 -0.4084 5.9034 2.7053 20 6 -1.2944 5.1514 1.7101 21 1 -1.5180 4.1587 2.1008 22 6 -2.5985 5.9242 1.5031 23 8 -3.3380 5.9467 2.7257 24 6 -0.5621 5.0203 0.3731 25 1 -0.3633 0.5262 -0.8827 26 1 -0.3634 -1.0276 -0.0143 27 1 -0.3633 0.5013 0.8971 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.8018 0.3536 -2.1587 31 1 1.6041 1.4138 2.0118 32 1 -0.0513 2.9469 2.1023 33 1 -0.2405 2.3359 0.4412 34 1 1.8515 5.9929 1.1844 35 1 2.5576 4.4497 1.7219 36 1 0.6725 4.1382 3.3024 37 1 1.5274 5.6664 3.6209 38 1 -0.9299 5.9972 3.6579 39 1 -0.1848 6.8962 2.3147 40 1 -2.3712 6.9453 1.1972 41 1 -3.1910 5.4363 0.7291 42 1 -4.1788 6.4209 2.6681 43 1 -1.1931 4.4842 -0.3357 44 1 -0.3385 6.0131 -0.0175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380778281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:27 Heat of formation + Delta-G solvation = -77.119364 kcal Electronic energy + Delta-G solvation = -20418.555702 eV Core-core repulsion = 17562.567111 eV Total energy + Delta-G solvation = -2855.988591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.36490 -37.03535 -36.00133 -32.54644 -31.70636 -31.09692 -29.84666 -27.51813 -25.46000 -24.05350 -22.37473 -21.88993 -20.94904 -19.86347 -18.23609 -17.26107 -16.74913 -15.55529 -15.32943 -14.93739 -14.49865 -14.09594 -13.89515 -13.71357 -13.47121 -12.82888 -12.71977 -12.51759 -12.24608 -11.87460 -11.80521 -11.61000 -11.46125 -11.11867 -10.94542 -10.82003 -10.77060 -10.66658 -10.31473 -10.13791 -9.92698 -9.81353 -9.70721 -9.53952 -9.35504 -9.21425 -8.32193 -7.25333 -6.02229 -3.92836 3.29702 3.39280 3.41630 4.11491 4.47112 4.76992 4.89178 5.02821 5.17558 5.25294 5.30661 5.36360 5.55683 5.62530 5.67289 5.71415 5.79421 5.82613 5.84329 5.87930 5.94138 6.04783 6.11250 6.17377 6.19752 6.32826 6.36168 6.40675 6.51663 6.61900 6.63682 6.75801 6.83752 6.90172 6.93359 7.03323 7.25583 7.47695 7.83044 8.04120 8.45724 8.78225 9.15527 9.65538 11.11472 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028113 B = 0.005554 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.755604 B = 5039.813383 C = 5300.078854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.151 4.151 3 C 0.193 3.807 4 H 0.025 0.975 5 C -0.496 4.496 6 H 0.079 0.921 7 C 0.071 3.929 8 N -0.896 5.896 9 Si 0.857 3.143 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.256 1.256 13 N -0.670 5.670 14 C 0.056 3.944 15 C -0.078 4.078 16 H 0.074 0.926 17 C -0.103 4.103 18 C -0.118 4.118 19 C -0.107 4.107 20 C -0.087 4.087 21 H 0.078 0.922 22 C 0.079 3.921 23 O -0.573 6.573 24 C -0.108 4.108 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.261 0.739 31 H 0.327 0.673 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.374 0.626 43 H 0.057 0.943 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.766 8.927 4.992 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.190 4.190 3 C 0.084 3.916 4 H 0.043 0.957 5 C -0.534 4.534 6 H 0.097 0.903 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.685 3.315 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.181 1.181 13 N -0.298 5.298 14 C -0.074 4.074 15 C -0.097 4.097 16 H 0.092 0.908 17 C -0.140 4.140 18 C -0.155 4.155 19 C -0.144 4.144 20 C -0.105 4.105 21 H 0.096 0.904 22 C 0.001 3.999 23 O -0.378 6.378 24 C -0.146 4.146 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.220 0.780 43 H 0.076 0.924 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.679 9.057 4.974 17.951 hybrid contribution -1.621 -0.591 -1.396 2.219 sum -16.301 8.466 3.579 18.713 Atomic orbital electron populations 1.21985 0.98647 1.00002 1.00580 1.22626 0.92687 1.01995 1.01715 1.19604 0.96580 0.87908 0.87520 0.95672 1.20986 0.89331 1.40636 1.02481 0.90270 1.24891 0.94664 0.94860 0.98592 1.69979 1.11687 1.44264 1.27525 0.87277 0.82149 0.77688 0.84406 1.20853 1.21572 1.18067 1.60483 1.30891 1.30475 1.07987 1.22159 0.91868 0.94125 0.99221 1.21049 0.94274 0.94550 0.99812 0.90799 1.21388 0.99750 0.98925 0.93961 1.21549 0.95696 1.00232 0.98053 1.21503 0.95838 0.98366 0.98717 1.21182 0.92703 0.99809 0.96835 0.90357 1.22314 0.92926 0.98976 0.85689 1.86505 1.36682 1.79487 1.35096 1.21574 0.97082 1.00428 0.95555 0.93705 0.94198 0.93392 0.92392 0.92556 0.92909 0.85586 0.92355 0.95208 0.93591 0.89719 0.91729 0.92775 0.92085 0.92771 0.93923 0.93978 0.77987 0.92442 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.64 37.16 0.32 -2.38 16 2 C -0.15 -3.18 4.57 -26.73 -0.12 -3.30 16 3 C 0.19 4.38 1.55 -68.86 -0.11 4.28 16 4 H 0.03 0.60 5.73 -51.93 -0.30 0.31 16 5 C -0.50 -13.74 9.27 -34.44 -0.32 -14.06 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 7 C 0.07 2.03 5.32 -17.82 -0.09 1.94 16 8 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 9 Si 0.86 21.18 25.77 -169.99 -4.38 16.80 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.26 -5.94 5.55 56.52 0.31 -5.63 16 13 N -0.67 -13.04 5.44 -107.95 -0.59 -13.63 16 14 C 0.06 0.92 3.58 -3.83 -0.01 0.91 16 15 C -0.08 -1.23 2.78 -90.62 -0.25 -1.48 16 16 H 0.07 1.36 7.57 -51.93 -0.39 0.97 16 17 C -0.10 -1.59 5.32 -26.73 -0.14 -1.73 16 18 C -0.12 -1.59 5.65 -26.73 -0.15 -1.74 16 19 C -0.11 -1.31 5.10 -26.73 -0.14 -1.45 16 20 C -0.09 -1.05 2.15 -90.62 -0.20 -1.24 16 21 H 0.08 1.04 6.49 -51.93 -0.34 0.70 16 22 C 0.08 0.80 6.43 37.16 0.24 1.04 16 23 O -0.57 -5.94 13.20 -35.23 -0.46 -6.40 16 24 C -0.11 -1.39 4.73 -26.73 -0.13 -1.52 16 25 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.76 6.30 -51.93 -0.33 0.44 16 28 H 0.06 1.32 5.07 -51.93 -0.26 1.06 16 29 H 0.06 1.17 8.00 -51.93 -0.42 0.76 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.33 6.07 8.31 -39.29 -0.33 5.74 16 32 H 0.06 0.87 4.81 -51.93 -0.25 0.62 16 33 H 0.03 0.50 5.60 -51.93 -0.29 0.21 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.55 7.68 -51.93 -0.40 1.15 16 36 H 0.06 0.91 6.37 -51.93 -0.33 0.58 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.76 7.82 -51.93 -0.41 0.36 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.37 2.10 9.12 45.56 0.42 2.51 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -30.32 321.63 -7.98 -38.30 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.07 Total: 7.43 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -1.10 Total: -20.74 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.19 Total: -40.23 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.46 Total: -6.40 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.38 Total: 16.80 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.32 -7.98 -38.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380778281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.817 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds