Wall clock time and date at job start Mon Mar 30 2020 06:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47227 * 2 1 4 4 C 1.42905 * 114.00008 * 183.17395 * 3 2 1 5 5 C 1.53006 * 110.01589 * 60.58036 * 4 3 2 6 6 N 1.46901 * 109.46930 * 64.39331 * 5 4 3 7 7 C 1.46894 * 110.99973 * 182.50604 * 6 5 4 8 8 H 1.09004 * 109.47212 * 35.54401 * 7 6 5 9 9 C 1.50702 * 109.47364 * 155.53944 * 7 6 5 10 10 H 1.07999 * 119.99696 * 5.07952 * 9 7 6 11 11 C 1.37871 * 120.00359 * 185.07683 * 9 7 6 12 12 N 1.31515 * 120.00036 * 8.71454 * 11 9 7 13 13 Si 1.86804 * 120.00194 * 188.43848 * 11 9 7 14 14 H 1.48497 * 109.46913 * 59.99816 * 13 11 9 15 15 H 1.48498 * 109.47094 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47144 * 300.00126 * 13 11 9 17 17 C 1.52997 * 109.47425 * 275.54206 * 7 6 5 18 18 C 1.52998 * 109.46911 * 296.13483 * 17 7 6 19 19 C 1.54264 * 110.07403 * 181.99819 * 4 3 2 20 20 C 1.54884 * 104.19539 * 95.69916 * 19 4 3 21 21 C 1.54888 * 102.74927 * 37.94103 * 20 19 4 22 22 C 1.53876 * 110.03412 * 299.19307 * 4 3 2 23 23 H 1.09003 * 109.46655 * 299.99985 * 1 2 3 24 24 H 1.09003 * 109.46872 * 59.99989 * 1 2 3 25 25 H 1.08995 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47393 * 240.00035 * 2 1 3 27 27 H 1.09000 * 109.47293 * 119.99712 * 2 1 3 28 28 H 1.09002 * 109.47186 * 304.39915 * 5 4 3 29 29 H 1.08999 * 109.46939 * 184.39236 * 5 4 3 30 30 H 1.00904 * 110.99877 * 58.55404 * 6 5 4 31 31 H 0.97003 * 119.99716 * 5.01562 * 12 11 9 32 32 H 1.08994 * 109.47077 * 56.13354 * 17 7 6 33 33 H 1.09005 * 109.47479 * 176.13565 * 17 7 6 34 34 H 1.09005 * 109.47543 * 305.78703 * 18 17 7 35 35 H 1.09004 * 109.46983 * 65.79009 * 18 17 7 36 36 H 1.09003 * 109.47014 * 185.78786 * 18 17 7 37 37 H 1.09000 * 110.48490 * 214.37628 * 19 4 3 38 38 H 1.08997 * 110.48541 * 337.01957 * 19 4 3 39 39 H 1.09009 * 110.75480 * 279.62629 * 20 19 4 40 40 H 1.09000 * 110.75769 * 156.26094 * 20 19 4 41 41 H 1.09004 * 110.48814 * 203.37852 * 21 20 19 42 42 H 1.09001 * 110.48282 * 80.74138 * 21 20 19 43 43 H 1.09003 * 110.02887 * 359.94527 * 22 4 3 44 44 H 1.08996 * 110.03444 * 121.38302 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4290 1.4608 -0.0723 5 6 3.9404 0.8216 -1.3650 6 7 3.4254 1.5711 -2.5187 7 6 3.8480 0.9500 -3.7811 8 1 3.8659 -0.1337 -3.6648 9 6 2.8786 1.3220 -4.8733 10 1 2.0805 2.0212 -4.6718 11 6 3.0104 0.7697 -6.1296 12 7 3.8690 -0.2056 -6.3324 13 14 1.9639 1.4014 -7.5422 14 1 2.2384 2.8453 -7.7544 15 1 2.2936 0.6474 -8.7783 16 1 0.5272 1.2134 -7.2166 17 6 5.2473 1.4464 -4.1504 18 6 5.2021 2.9539 -4.4079 19 6 3.8454 2.9451 -0.0160 20 6 4.1732 3.1913 1.4776 21 6 4.8612 1.8691 1.8989 22 6 4.0750 0.7766 1.1453 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.5970 -0.2114 -1.4202 29 1 5.0301 0.8434 -1.3747 30 1 3.7106 2.5381 -2.4783 31 1 4.3567 -0.5857 -5.5850 32 1 5.9347 1.2383 -3.3306 33 1 5.5889 0.9342 -5.0499 34 1 4.4401 3.1720 -5.1563 35 1 4.9603 3.4738 -3.4809 36 1 6.1738 3.2899 -4.7701 37 1 4.7268 3.1177 -0.6336 38 1 3.0227 3.5844 -0.3364 39 1 3.2608 3.3521 2.0520 40 1 4.8550 4.0343 1.5896 41 1 4.7800 1.7231 2.9761 42 1 5.9067 1.8680 1.5907 43 1 3.3032 0.3588 1.7918 44 1 4.7527 -0.0107 0.8152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381836231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:37 Heat of formation + Delta-G solvation = -87.703332 kcal Electronic energy + Delta-G solvation = -20618.894508 eV Core-core repulsion = 17762.446962 eV Total energy + Delta-G solvation = -2856.447547 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82012 -38.26927 -36.82647 -34.56644 -32.68468 -31.86099 -29.89892 -29.40079 -27.35057 -25.49221 -24.83586 -23.67176 -21.78923 -21.25168 -20.46730 -18.79717 -17.90082 -16.85272 -16.36471 -16.04174 -15.90446 -15.58048 -15.46803 -15.16438 -14.83714 -14.20409 -14.12062 -13.87804 -13.46138 -13.42152 -13.16392 -13.02253 -12.62215 -12.51919 -12.22146 -12.18356 -12.02702 -11.97345 -11.95067 -11.89040 -11.83978 -11.70538 -11.44738 -11.30399 -10.71314 -10.41476 -10.16732 -8.97710 -8.51508 -6.19802 1.54586 1.61407 1.80608 2.59525 2.78691 3.24167 3.44857 3.61351 3.72786 3.96720 4.14400 4.20156 4.27085 4.31544 4.35202 4.38714 4.43336 4.47411 4.53734 4.55568 4.62277 4.74164 4.86001 4.86534 4.90543 4.97619 5.03957 5.08503 5.13073 5.13757 5.19885 5.21239 5.23146 5.33611 5.38542 5.44843 5.54711 5.98812 6.20603 6.45195 6.55758 6.79572 6.81482 7.54964 8.83834 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.006250 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.260003 B = 4479.233822 C = 5156.148931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.378 6.378 4 C 0.120 3.880 5 C 0.041 3.959 6 N -0.671 5.671 7 C 0.210 3.790 8 H -0.014 1.014 9 C -0.572 4.572 10 H 0.042 0.958 11 C -0.027 4.027 12 N -0.939 5.939 13 Si 1.106 2.894 14 H -0.270 1.270 15 H -0.287 1.287 16 H -0.278 1.278 17 C -0.142 4.142 18 C -0.124 4.124 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.115 4.115 22 C -0.149 4.149 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.027 0.973 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.028 0.972 30 H 0.334 0.666 31 H 0.255 0.745 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 4.319 16.525 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.298 6.298 4 C 0.080 3.920 5 C -0.089 4.089 6 N -0.303 5.303 7 C 0.100 3.900 8 H 0.003 0.997 9 C -0.611 4.611 10 H 0.060 0.940 11 C -0.225 4.225 12 N -0.577 5.577 13 Si 0.929 3.071 14 H -0.196 1.196 15 H -0.213 1.213 16 H -0.204 1.204 17 C -0.182 4.182 18 C -0.181 4.181 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.187 4.187 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.154 0.846 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.198 4.005 14.925 15.454 hybrid contribution 1.431 -0.432 1.115 1.865 sum 1.234 3.573 16.040 16.479 Atomic orbital electron populations 1.21684 0.93052 1.02873 1.02354 1.22468 0.96111 0.84359 0.99363 1.87926 1.20876 1.26585 1.94414 1.22222 0.80993 0.96624 0.92138 1.22594 0.96348 0.97815 0.92169 1.60540 1.63430 1.05459 1.00829 1.19090 0.91294 0.91768 0.87810 0.99650 1.22057 1.14298 1.27857 0.96865 0.93971 1.26957 0.98361 0.94581 1.02594 1.70914 1.27209 1.24989 1.34597 0.83072 0.74660 0.76179 0.73186 1.19567 1.21264 1.20360 1.22045 0.99015 0.97955 0.99144 1.21500 1.00668 0.94760 1.01166 1.22318 1.00724 0.93297 0.98547 1.22471 1.00815 0.98049 0.93920 1.22302 0.99003 0.93576 1.00396 1.22800 1.00189 0.99224 0.96500 0.91141 0.93718 0.89738 0.95499 0.92123 0.93288 0.95446 0.84613 0.93527 0.94555 0.94475 0.93246 0.92827 0.93038 0.90906 0.91452 0.91197 0.89789 0.89843 0.91042 0.90338 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 10.28 71.98 0.74 -3.02 16 2 C 0.05 1.61 5.97 71.98 0.43 2.04 16 3 O -0.38 -12.72 9.91 -148.98 -1.48 -14.19 16 4 C 0.12 3.60 0.78 -10.07 -0.01 3.60 16 5 C 0.04 1.50 3.91 86.30 0.34 1.83 16 6 N -0.67 -29.16 6.12 -495.44 -3.03 -32.20 16 7 C 0.21 10.65 1.96 44.17 0.09 10.74 16 8 H -0.01 -0.82 7.05 -2.38 -0.02 -0.84 16 9 C -0.57 -32.30 7.22 25.60 0.18 -32.11 16 10 H 0.04 2.45 7.83 -2.91 -0.02 2.42 16 11 C -0.03 -1.56 5.24 84.65 0.44 -1.11 16 12 N -0.94 -57.20 12.90 21.45 0.28 -56.93 16 13 Si 1.11 51.20 29.91 68.60 2.05 53.26 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 15 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 17 C -0.14 -6.56 5.49 30.59 0.17 -6.39 16 18 C -0.12 -5.05 9.38 71.98 0.68 -4.37 16 19 C -0.11 -2.98 5.06 31.67 0.16 -2.82 16 20 C -0.12 -2.31 6.91 31.88 0.22 -2.09 16 21 C -0.12 -2.16 6.83 31.67 0.22 -1.95 16 22 C -0.15 -3.51 5.70 31.32 0.18 -3.33 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.03 0.96 6.22 -2.39 -0.01 0.94 16 27 H 0.06 1.53 6.52 -2.39 -0.02 1.51 16 28 H 0.05 1.95 6.17 -2.39 -0.01 1.93 16 29 H 0.03 0.98 7.40 -2.39 -0.02 0.96 16 30 H 0.33 13.67 5.27 -89.69 -0.47 13.20 16 31 H 0.25 15.75 6.22 -92.71 -0.58 15.18 16 32 H 0.04 1.52 7.38 -2.39 -0.02 1.50 16 33 H 0.04 1.92 6.51 -2.38 -0.02 1.91 16 34 H 0.05 2.26 6.89 -2.38 -0.02 2.24 16 35 H 0.05 1.93 6.63 -2.38 -0.02 1.91 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.93 7.51 -2.39 -0.02 1.92 16 38 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 39 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.76 6.47 -2.39 -0.02 1.74 16 44 H 0.07 1.58 7.67 -2.39 -0.02 1.56 16 Total: -1.00 -64.60 329.84 2.33 -62.27 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.68 Total: 26.78 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 3.83 Total: -38.99 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -2.76 Total: -89.12 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -1.48 Total: -14.19 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.26 kcal Total: -64.60 2.33 -62.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381836231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.435 kcal (2) G-P(sol) polarization free energy of solvation -64.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds