Wall clock time and date at job start Mon Mar 30 2020 07:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.78134 * 2 1 4 4 C 1.50474 * 109.63224 * 120.47923 * 2 1 3 5 5 C 1.54066 * 112.49964 * 213.86169 * 4 2 1 6 6 C 1.54064 * 112.81884 * 318.28142 * 5 4 2 7 7 C 1.50468 * 112.49925 * 318.28706 * 6 5 4 8 8 C 1.54241 * 108.51926 * 94.15076 * 7 6 5 9 9 C 1.45543 * 112.40472 * 280.00684 * 8 7 6 10 10 H 1.09000 * 108.89792 * 301.27899 * 9 8 7 11 11 N 1.46909 * 108.89171 * 182.68991 * 9 8 7 12 12 C 1.46899 * 110.99491 * 85.00125 * 11 9 8 13 13 C 1.53004 * 109.46707 * 179.97438 * 12 11 9 14 14 O 1.42900 * 109.47252 * 65.00000 * 13 12 11 15 15 C 1.42902 * 114.00155 * 179.97438 * 14 13 12 16 16 C 1.50708 * 109.46907 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99917 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99477 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00523 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99584 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47113 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47128 * 119.99902 * 20 18 16 23 23 H 1.48493 * 109.46972 * 239.99870 * 20 18 16 24 24 H 1.08998 * 109.47272 * 299.51452 * 1 2 3 25 25 H 1.09000 * 109.47241 * 59.52348 * 1 2 3 26 26 H 1.09001 * 109.46562 * 179.51596 * 1 2 3 27 27 H 1.08997 * 108.87467 * 93.08397 * 4 2 1 28 28 H 1.09000 * 108.87450 * 334.64195 * 4 2 1 29 29 H 1.09000 * 108.80852 * 79.14685 * 5 4 2 30 30 H 1.09001 * 108.81240 * 197.42128 * 5 4 2 31 31 H 1.09003 * 108.87192 * 79.06023 * 6 5 4 32 32 H 1.08996 * 108.87715 * 197.60394 * 6 5 4 33 33 H 1.09001 * 109.62862 * 213.86057 * 7 6 5 34 34 H 1.09002 * 109.63034 * 334.24616 * 7 6 5 35 35 H 1.08996 * 108.89452 * 40.75972 * 8 7 6 36 36 H 1.09000 * 108.89274 * 159.25717 * 8 7 6 37 37 H 1.00895 * 110.99590 * 321.04673 * 11 9 8 38 38 H 1.08999 * 109.47754 * 299.99365 * 12 11 9 39 39 H 1.08998 * 109.47550 * 59.99977 * 12 11 9 40 40 H 1.09001 * 109.47209 * 185.00177 * 13 12 11 41 41 H 1.08999 * 109.47215 * 305.00290 * 13 12 11 42 42 H 1.08992 * 109.47412 * 299.99995 * 15 14 13 43 43 H 1.09004 * 109.46724 * 60.00317 * 15 14 13 44 44 H 0.96994 * 120.00344 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0355 -0.7189 1.2214 5 6 3.3469 -0.1156 1.7600 6 6 4.3396 0.2518 0.6406 7 6 4.4029 -0.7943 -0.4391 8 6 3.4277 -0.3953 -1.5655 9 6 2.0482 -0.7370 -1.2519 10 1 1.9808 -1.8113 -1.0806 11 7 1.1986 -0.3842 -2.3973 12 6 1.1799 -1.4655 -3.3915 13 6 0.2863 -1.0626 -4.5663 14 8 0.8610 0.0596 -5.2390 15 6 0.1008 0.5178 -6.3589 16 6 0.7954 1.6978 -6.9885 17 1 1.7246 2.0611 -6.5750 18 6 0.2445 2.3135 -8.0923 19 7 -0.8867 1.8708 -8.5961 20 14 1.1058 3.7757 -8.8732 21 1 2.3523 4.0743 -8.1233 22 1 1.4408 3.4571 -10.2844 23 1 0.2087 4.9583 -8.8322 24 1 -0.3634 0.5063 0.8943 25 1 -0.3634 0.5212 -0.8857 26 1 -0.3632 -1.0277 -0.0087 27 1 2.2063 -1.7654 0.9692 28 1 1.2762 -0.6655 2.0016 29 1 3.1120 0.7829 2.3306 30 1 3.8191 -0.8384 2.4253 31 1 4.0349 1.1993 0.1962 32 1 5.3326 0.3694 1.0745 33 1 5.4167 -0.8506 -0.8354 34 1 4.1160 -1.7623 -0.0283 35 1 3.4968 0.6804 -1.7277 36 1 3.7187 -0.9081 -2.4823 37 1 1.4962 0.4851 -2.8140 38 1 2.1929 -1.6466 -3.7506 39 1 0.7891 -2.3739 -2.9331 40 1 0.2010 -1.8981 -5.2612 41 1 -0.7033 -0.7960 -4.1954 42 1 0.0121 -0.2849 -7.0908 43 1 -0.8929 0.8171 -6.0254 44 1 -1.2741 2.3037 -9.3728 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382096372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:45 Heat of formation + Delta-G solvation = -76.312478 kcal Electronic energy + Delta-G solvation = -19635.106537 eV Core-core repulsion = 16779.152935 eV Total energy + Delta-G solvation = -2855.953602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70564 -36.94792 -35.08309 -33.36343 -32.72632 -31.22956 -28.25777 -27.24825 -26.45582 -23.65214 -23.07855 -22.33965 -21.30029 -20.48233 -19.13203 -16.45022 -15.89020 -15.65130 -15.52672 -14.91661 -14.82677 -14.32495 -14.24157 -14.09656 -13.33450 -13.11682 -12.96847 -12.68308 -12.41767 -12.02272 -11.93578 -11.70145 -11.39677 -11.36977 -10.99926 -10.81919 -10.76098 -10.74213 -10.62055 -10.54267 -10.39591 -10.28270 -10.12093 -9.90820 -9.08128 -8.81387 -8.15584 -8.05684 -6.10231 -4.11906 3.29297 3.35746 3.41913 4.30168 4.35749 4.55572 4.66747 4.83294 4.97464 5.02811 5.09342 5.14489 5.22747 5.26355 5.35549 5.46552 5.57033 5.65478 5.72716 5.75441 5.78470 5.84388 5.98066 6.04303 6.04796 6.05837 6.11671 6.13199 6.20212 6.24433 6.30487 6.34874 6.42967 6.53223 6.69065 7.13129 7.33831 7.45589 7.74358 7.80117 8.16553 8.59519 9.01801 9.53063 11.01380 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027832 B = 0.003949 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.782934 B = 7088.538179 C = 7460.833026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.112 4.112 8 C -0.148 4.148 9 C 0.094 3.906 10 H 0.067 0.933 11 N -0.682 5.682 12 C 0.066 3.934 13 C 0.062 3.938 14 O -0.399 6.399 15 C 0.197 3.803 16 C -0.514 4.514 17 H 0.066 0.934 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.282 1.282 24 H 0.037 0.963 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.354 0.646 38 H 0.032 0.968 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.046 0.954 42 H 0.003 0.997 43 H 0.006 0.994 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.963 -6.408 19.109 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.095 4.095 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.150 4.150 8 C -0.187 4.187 9 C -0.016 4.016 10 H 0.085 0.915 11 N -0.313 5.313 12 C -0.063 4.063 13 C -0.015 4.015 14 O -0.319 6.319 15 C 0.123 3.877 16 C -0.552 4.552 17 H 0.084 0.916 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.734 3.266 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.208 1.208 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.173 0.827 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.407 -6.490 19.298 21.345 hybrid contribution 0.983 0.643 -1.077 1.593 sum 7.390 -5.848 18.221 20.514 Atomic orbital electron populations 1.21646 0.94284 1.01446 1.01291 1.20842 0.96448 0.99263 0.92952 0.91408 1.21417 0.96357 0.99788 0.97613 1.21907 0.95441 1.00450 0.97540 1.21347 0.98633 0.99377 0.96322 1.21241 0.98912 0.99105 0.95748 1.21268 0.96409 1.02229 0.98803 1.20456 0.90155 0.99288 0.91716 0.91491 1.60719 1.55036 1.06413 1.09156 1.21968 0.98515 0.94197 0.91648 1.22295 0.96346 0.90273 0.92633 1.87785 1.50957 1.46570 1.46578 1.20170 0.91231 0.94081 0.82244 1.21093 1.08631 1.13290 1.12168 0.91602 1.24946 0.95090 0.97831 0.96638 1.69969 1.18649 1.41397 1.23741 0.86300 0.79567 0.81798 0.78939 1.19526 1.20867 1.20821 0.94349 0.90804 0.93472 0.92424 0.92211 0.92498 0.92689 0.91924 0.92702 0.92232 0.91796 0.91650 0.92139 0.82666 0.94975 0.90950 0.94381 0.93615 0.97893 0.97638 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 8.48 37.16 0.32 -1.19 16 2 C -0.08 -0.83 2.27 -91.24 -0.21 -1.04 16 3 H 0.07 0.78 6.98 -51.93 -0.36 0.42 16 4 C -0.11 -1.05 4.89 -27.44 -0.13 -1.19 16 5 C -0.12 -0.98 5.85 -25.62 -0.15 -1.13 16 6 C -0.12 -1.07 5.31 -27.44 -0.15 -1.22 16 7 C -0.11 -1.07 5.60 -27.35 -0.15 -1.22 16 8 C -0.15 -1.71 4.46 -29.60 -0.13 -1.84 16 9 C 0.09 1.11 1.72 -70.58 -0.12 0.99 16 10 H 0.07 0.79 7.06 -51.93 -0.37 0.43 16 11 N -0.68 -9.95 4.67 -109.79 -0.51 -10.46 16 12 C 0.07 1.00 5.86 -3.82 -0.02 0.98 16 13 C 0.06 1.18 6.28 37.16 0.23 1.41 16 14 O -0.40 -9.56 9.85 -35.23 -0.35 -9.91 16 15 C 0.20 5.45 5.69 36.01 0.20 5.66 16 16 C -0.51 -15.20 9.43 -34.44 -0.32 -15.52 16 17 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 20 Si 0.91 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 25 H 0.07 1.00 7.27 -51.93 -0.38 0.63 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.53 6.64 -51.93 -0.34 0.19 16 28 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.61 6.63 -51.93 -0.34 0.27 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.59 6.99 -51.93 -0.36 0.23 16 35 H 0.06 0.81 7.40 -51.93 -0.38 0.42 16 36 H 0.06 0.77 7.12 -51.93 -0.37 0.40 16 37 H 0.35 5.85 7.94 -39.29 -0.31 5.54 16 38 H 0.03 0.50 7.20 -51.93 -0.37 0.12 16 39 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 43 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -29.82 334.40 -9.02 -38.84 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -8.18 Total: -0.30 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -0.73 Total: -13.78 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.22 Total: -36.81 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.35 Total: -9.91 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.82 -9.02 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382096372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.469 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds