Wall clock time and date at job start Mon Mar 30 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 H 1.08994 * 109.54498 * 57.54802 * 3 2 1 5 5 C 1.53106 * 109.50491 * 297.43243 * 3 2 1 6 6 O 1.43016 * 109.25749 * 183.22083 * 5 3 2 7 7 C 1.43015 * 113.73977 * 58.66842 * 6 5 3 8 8 H 1.09003 * 109.50672 * 181.39137 * 7 6 5 9 9 C 1.53004 * 109.50319 * 61.26544 * 7 6 5 10 10 C 1.53092 * 109.26194 * 301.33307 * 7 6 5 11 11 N 1.47017 * 109.50374 * 177.65393 * 3 2 1 12 12 C 1.46892 * 111.00187 * 302.32355 * 11 3 2 13 13 C 1.53002 * 109.47306 * 167.59240 * 12 11 3 14 14 C 1.53001 * 109.47471 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47268 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47279 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99672 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00318 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00188 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99888 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46991 * 89.99771 * 20 18 16 22 22 H 1.48506 * 109.47103 * 209.99786 * 20 18 16 23 23 H 1.48504 * 109.47062 * 329.99812 * 20 18 16 24 24 H 1.08994 * 109.47081 * 186.49225 * 1 2 3 25 25 H 1.08999 * 109.46795 * 306.48999 * 1 2 3 26 26 H 1.08997 * 109.46657 * 66.48190 * 1 2 3 27 27 H 1.08994 * 109.47459 * 239.99754 * 2 1 3 28 28 H 1.09005 * 109.47154 * 119.99363 * 2 1 3 29 29 H 1.08997 * 109.50560 * 303.15726 * 5 3 2 30 30 H 1.08996 * 109.50061 * 63.28691 * 5 3 2 31 31 H 1.09003 * 109.46847 * 59.99944 * 9 7 6 32 32 H 1.08997 * 109.47008 * 179.97438 * 9 7 6 33 33 H 1.08997 * 109.47051 * 300.00250 * 9 7 6 34 34 H 1.08996 * 109.50538 * 296.90955 * 10 7 6 35 35 H 1.08999 * 109.50732 * 176.78234 * 10 7 6 36 36 H 1.09001 * 109.47293 * 287.59484 * 12 11 3 37 37 H 1.08998 * 109.46977 * 47.59486 * 12 11 3 38 38 H 1.09001 * 109.47144 * 300.00336 * 13 12 11 39 39 H 1.09007 * 109.46998 * 60.00000 * 13 12 11 40 40 H 1.09002 * 109.46701 * 300.00545 * 14 13 12 41 41 H 1.08998 * 109.46953 * 60.00160 * 14 13 12 42 42 H 1.08991 * 109.47278 * 300.00219 * 15 14 13 43 43 H 1.09007 * 109.47110 * 59.99984 * 15 14 13 44 44 H 0.97003 * 120.00209 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6419 1.9700 0.8667 5 6 1.5836 2.1461 -1.2809 6 8 2.1254 3.4693 -1.3110 7 6 3.5541 3.5077 -1.2578 8 1 3.8906 4.5445 -1.2598 9 6 4.1303 2.7803 -2.4744 10 6 4.0305 2.8179 0.0231 11 7 3.5091 1.4437 0.0567 12 6 3.9907 0.7268 1.2449 13 6 5.4950 0.4790 1.1162 14 6 5.9965 -0.2683 2.3536 15 6 7.5009 -0.5156 2.2251 16 6 7.9950 -1.2511 3.4441 17 1 7.3049 -1.5161 4.2315 18 6 9.3277 -1.5867 3.5538 19 7 9.7588 -2.2290 4.6173 20 14 10.5212 -1.1290 2.1915 21 1 11.0928 0.2140 2.4649 22 1 11.6160 -2.1309 2.1353 23 1 9.8036 -1.1063 0.8916 24 1 -0.3633 -1.0210 0.1162 25 1 -0.3633 0.6111 0.8262 26 1 -0.3632 0.4101 -0.9423 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.9368 1.5883 -2.1482 30 1 0.4950 2.1980 -1.2994 31 1 3.7876 3.2696 -3.3861 32 1 5.2191 2.8104 -2.4335 33 1 3.7946 1.7434 -2.4703 34 1 3.6642 3.3675 0.8902 35 1 5.1201 2.7943 0.0402 36 1 3.7959 1.3258 2.1345 37 1 3.4711 -0.2277 1.3287 38 1 5.6897 -0.1201 0.2267 39 1 6.0146 1.4335 1.0324 40 1 5.8016 0.3304 3.2433 41 1 5.4769 -1.2229 2.4369 42 1 7.6961 -1.1140 1.3353 43 1 8.0202 0.4392 2.1420 44 1 10.6965 -2.4648 4.6946 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385236625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:37 Heat of formation + Delta-G solvation = -85.049384 kcal Electronic energy + Delta-G solvation = -19765.042863 eV Core-core repulsion = 16908.710401 eV Total energy + Delta-G solvation = -2856.332463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.15157 -37.79806 -36.30918 -35.16869 -34.06665 -32.20563 -30.71421 -28.75448 -27.45837 -25.87227 -24.81571 -22.62886 -22.11983 -21.66798 -20.32707 -18.86495 -17.70314 -17.46036 -16.41396 -16.34697 -16.02809 -15.91211 -15.56753 -15.06173 -14.82015 -14.63407 -14.13323 -13.97108 -13.78537 -13.58878 -13.32397 -13.16675 -12.81248 -12.77000 -12.43242 -12.31885 -12.21599 -12.05710 -11.92298 -11.71164 -11.64698 -11.36402 -11.29727 -11.16601 -11.14246 -10.76674 -10.46507 -9.33876 -8.29935 -6.34159 1.35484 1.37642 1.50157 2.36297 2.71582 2.91120 3.05545 3.73903 3.81954 3.90412 4.06166 4.06895 4.17569 4.24799 4.33054 4.41316 4.47628 4.52890 4.54583 4.61609 4.65803 4.70244 4.77607 4.85287 4.87634 4.90035 5.02662 5.09646 5.12914 5.16249 5.20737 5.25009 5.29330 5.37243 5.42837 5.56732 5.64023 5.68056 6.00907 6.05803 6.22612 6.28993 6.74128 7.30815 8.87148 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027612 B = 0.004170 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.803563 B = 6713.676582 C = 7405.859171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.050 3.950 4 H 0.036 0.964 5 C 0.067 3.933 6 O -0.397 6.397 7 C 0.088 3.912 8 H 0.116 0.884 9 C -0.169 4.169 10 C 0.020 3.980 11 N -0.532 5.532 12 C 0.058 3.942 13 C -0.101 4.101 14 C -0.094 4.094 15 C -0.011 4.011 16 C -0.535 4.535 17 H 0.029 0.971 18 C 0.002 3.998 19 N -0.954 5.954 20 Si 0.953 3.047 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.246 1.246 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.019 0.981 43 H 0.016 0.984 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.684 10.566 -15.803 25.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.059 4.059 4 H 0.054 0.946 5 C -0.010 4.010 6 O -0.316 6.316 7 C 0.030 3.970 8 H 0.134 0.866 9 C -0.226 4.226 10 C -0.108 4.108 11 N -0.257 5.257 12 C -0.070 4.070 13 C -0.138 4.138 14 C -0.133 4.133 15 C -0.048 4.048 16 C -0.573 4.573 17 H 0.047 0.953 18 C -0.195 4.195 19 N -0.594 5.594 20 Si 0.776 3.224 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.169 1.169 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.490 10.421 -16.159 25.992 hybrid contribution 0.775 0.000 1.099 1.344 sum -16.715 10.421 -15.060 24.795 Atomic orbital electron populations 1.21783 0.93975 1.02506 1.02406 1.21589 0.96835 0.94246 1.02824 1.22380 0.87441 0.97709 0.98341 0.94567 1.22846 0.99264 0.82939 0.95944 1.88002 1.20885 1.28139 1.94606 1.22381 0.80372 1.00561 0.93674 0.86628 1.22212 1.01734 1.01434 0.97252 1.22868 1.01483 0.88708 0.97757 1.62236 1.08452 1.14831 1.40158 1.22168 0.95829 0.98828 0.90151 1.21480 0.94442 1.00161 0.97764 1.21289 0.95724 0.99112 0.97140 1.19525 0.94581 0.95633 0.95096 1.21566 0.94263 1.36545 1.04952 0.95273 1.26067 1.00578 0.94462 0.98362 1.70077 1.16343 1.42261 1.30764 0.85612 0.78047 0.78388 0.80326 1.19091 1.20899 1.16929 0.91742 0.92758 0.91406 0.90989 0.92000 0.91724 0.87057 0.91814 0.91198 0.91896 0.94978 0.89166 0.95522 0.89780 0.91607 0.92219 0.93823 0.93366 0.96250 0.96515 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.44 71.98 0.68 -1.31 16 2 C -0.12 -2.06 5.24 30.60 0.16 -1.90 16 3 C 0.05 1.00 2.08 44.93 0.09 1.09 16 4 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 5 C 0.07 1.21 5.51 72.02 0.40 1.60 16 6 O -0.40 -8.60 10.64 -148.98 -1.59 -10.19 16 7 C 0.09 1.70 3.92 30.63 0.12 1.82 16 8 H 0.12 1.89 8.14 -2.39 -0.02 1.88 16 9 C -0.17 -3.01 8.88 71.98 0.64 -2.37 16 10 C 0.02 0.44 4.87 86.31 0.42 0.86 16 11 N -0.53 -12.27 3.88 -870.01 -3.38 -15.64 16 12 C 0.06 1.51 4.77 86.31 0.41 1.92 16 13 C -0.10 -3.07 5.20 30.60 0.16 -2.91 16 14 C -0.09 -3.70 5.15 30.59 0.16 -3.54 16 15 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 16 C -0.54 -31.71 9.66 25.60 0.25 -31.46 16 17 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 18 C 0.00 0.10 5.47 84.65 0.46 0.56 16 19 N -0.95 -60.96 13.96 21.44 0.30 -60.66 16 20 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.74 6.92 -2.39 -0.02 0.73 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.21 5.99 -2.38 -0.01 1.20 16 29 H 0.06 1.14 6.49 -2.39 -0.02 1.13 16 30 H 0.11 1.61 6.82 -2.39 -0.02 1.59 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.25 6.13 -2.39 -0.01 1.24 16 34 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 1.99 6.48 -2.39 -0.02 1.97 16 36 H 0.03 0.73 8.09 -2.39 -0.02 0.71 16 37 H 0.08 2.14 5.61 -2.39 -0.01 2.13 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 1.77 6.60 -2.38 -0.02 1.75 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 43 H 0.02 0.77 7.57 -2.38 -0.02 0.75 16 44 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -66.68 330.72 2.17 -64.51 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.88 Total: 11.22 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 4.07 Total: -36.04 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -3.08 Total: -76.30 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -1.59 Total: -10.19 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -66.68 2.17 -64.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385236625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.542 kcal (2) G-P(sol) polarization free energy of solvation -66.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds