Wall clock time and date at job start Mon Mar 30 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47269 * 2 1 4 4 H 1.09003 * 109.54235 * 303.85885 * 3 2 1 5 5 C 1.53094 * 109.50929 * 63.96729 * 3 2 1 6 6 O 1.43019 * 109.26182 * 176.78124 * 5 3 2 7 7 C 1.43010 * 113.73946 * 301.33348 * 6 5 3 8 8 H 1.09004 * 109.50716 * 298.73370 * 7 6 5 9 9 C 1.53002 * 109.54485 * 178.62414 * 7 6 5 10 10 C 1.53096 * 109.26017 * 58.66653 * 7 6 5 11 11 N 1.47015 * 109.25981 * 303.15131 * 10 7 6 12 12 C 1.46898 * 111.00271 * 182.38804 * 11 10 7 13 13 C 1.53005 * 109.47113 * 67.28034 * 12 11 10 14 14 C 1.52996 * 109.47129 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46894 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47345 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99698 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00315 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99940 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99959 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47366 * 89.99874 * 20 18 16 22 22 H 1.48505 * 109.47142 * 210.00241 * 20 18 16 23 23 H 1.48502 * 109.47147 * 330.00083 * 20 18 16 24 24 H 1.09002 * 109.47158 * 293.77296 * 1 2 3 25 25 H 1.09000 * 109.47210 * 53.76893 * 1 2 3 26 26 H 1.08994 * 109.47521 * 173.77180 * 1 2 3 27 27 H 1.09004 * 109.47223 * 239.99709 * 2 1 3 28 28 H 1.08999 * 109.47178 * 120.00033 * 2 1 3 29 29 H 1.09010 * 109.50391 * 56.85229 * 5 3 2 30 30 H 1.08991 * 109.54582 * 296.74324 * 5 3 2 31 31 H 1.09001 * 109.46783 * 300.19911 * 9 7 6 32 32 H 1.09004 * 109.46963 * 60.19320 * 9 7 6 33 33 H 1.08998 * 109.47238 * 180.19655 * 9 7 6 34 34 H 1.08996 * 109.50971 * 183.21458 * 10 7 6 35 35 H 1.09004 * 109.54319 * 63.10891 * 10 7 6 36 36 H 1.09003 * 109.47232 * 307.28637 * 12 11 10 37 37 H 1.08994 * 109.47539 * 187.28289 * 12 11 10 38 38 H 1.09004 * 109.46818 * 59.99708 * 13 12 11 39 39 H 1.08998 * 109.46778 * 300.00149 * 13 12 11 40 40 H 1.08998 * 109.47487 * 299.99806 * 14 13 12 41 41 H 1.09003 * 109.47149 * 60.00644 * 14 13 12 42 42 H 1.09009 * 109.47285 * 299.99958 * 15 14 13 43 43 H 1.09001 * 109.47472 * 60.00061 * 15 14 13 44 44 H 0.96996 * 119.99985 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6220 1.9770 -0.8530 5 6 1.6133 2.1356 1.2966 6 8 2.1559 3.4585 1.3250 7 6 3.5829 3.4975 1.2392 8 1 4.0133 2.9723 2.0919 9 6 4.0564 4.9524 1.2432 10 6 4.0296 2.8182 -0.0581 11 7 3.5074 1.4443 -0.0907 12 6 3.9612 0.7370 -1.2956 13 6 5.4741 0.5212 -1.2208 14 6 5.9467 -0.2159 -2.4754 15 6 7.4595 -0.4323 -2.4004 16 6 7.9252 -1.1578 -3.6364 17 1 7.2133 -1.4364 -4.3994 18 6 9.2599 -1.4660 -3.7932 19 7 9.6661 -2.0997 -4.8716 20 14 10.4911 -0.9836 -2.4739 21 1 10.6096 -2.0822 -1.4819 22 1 11.8152 -0.7362 -3.0991 23 1 10.0273 0.2513 -1.7918 24 1 -0.3633 0.4143 0.9405 25 1 -0.3633 0.6074 -0.8289 26 1 -0.3634 -1.0215 -0.1115 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9865 1.5708 2.1511 30 1 0.5256 2.1873 1.3416 31 1 3.6244 5.4774 0.3912 32 1 3.7381 5.4355 2.1671 33 1 5.1438 4.9809 1.1743 34 1 5.1184 2.7948 -0.1005 35 1 3.6440 3.3745 -0.9125 36 1 3.7222 1.3314 -2.1775 37 1 3.4594 -0.2283 -1.3610 38 1 5.7132 -0.0730 -0.3389 39 1 5.9760 1.4866 -1.1554 40 1 5.4449 -1.1813 -2.5404 41 1 5.7076 0.3780 -3.3576 42 1 7.9618 0.5330 -2.3352 43 1 7.6983 -1.0264 -1.5183 44 1 10.6051 -2.3161 -4.9821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385236626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:40 Heat of formation + Delta-G solvation = -88.208583 kcal Electronic energy + Delta-G solvation = -19582.156192 eV Core-core repulsion = 16725.686736 eV Total energy + Delta-G solvation = -2856.469456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01641 -37.80299 -36.34985 -35.24199 -34.09932 -32.57682 -30.82070 -28.38469 -27.58480 -25.81320 -24.41999 -22.64456 -22.16422 -21.69162 -20.97134 -18.86856 -17.68430 -17.25739 -16.71648 -16.36297 -16.00487 -15.79291 -15.51163 -15.15157 -14.85374 -14.64451 -14.12778 -13.98796 -13.63607 -13.51635 -13.32415 -13.23985 -12.98936 -12.77520 -12.42664 -12.40367 -12.25378 -12.10422 -11.80926 -11.77155 -11.69877 -11.43590 -11.30922 -11.22094 -11.17195 -10.76706 -10.47745 -9.40557 -8.30042 -6.34277 1.35771 1.37529 1.49999 2.36268 2.67420 2.81375 3.05418 3.69381 3.80229 3.85399 4.03243 4.11079 4.15849 4.20769 4.30606 4.40544 4.45372 4.51699 4.52609 4.61623 4.65508 4.68225 4.75542 4.79625 4.83842 4.86664 5.00746 5.05863 5.11964 5.12671 5.19557 5.23778 5.26173 5.27662 5.38775 5.55855 5.62952 5.67803 5.97727 6.01638 6.21875 6.28769 6.73950 7.30668 8.87051 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.004147 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.268364 B = 6750.287379 C = 7612.710377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.049 3.951 4 H 0.037 0.963 5 C 0.070 3.930 6 O -0.399 6.399 7 C 0.088 3.912 8 H 0.066 0.934 9 C -0.141 4.141 10 C 0.021 3.979 11 N -0.539 5.539 12 C 0.058 3.942 13 C -0.102 4.102 14 C -0.094 4.094 15 C -0.011 4.011 16 C -0.535 4.535 17 H 0.029 0.971 18 C 0.002 3.998 19 N -0.953 5.953 20 Si 0.953 3.047 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.246 1.246 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.033 0.967 36 H 0.027 0.973 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.324 11.188 15.907 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.060 4.060 4 H 0.055 0.945 5 C -0.006 4.006 6 O -0.319 6.319 7 C 0.031 3.969 8 H 0.084 0.916 9 C -0.199 4.199 10 C -0.107 4.107 11 N -0.264 5.264 12 C -0.069 4.069 13 C -0.140 4.140 14 C -0.132 4.132 15 C -0.049 4.049 16 C -0.573 4.573 17 H 0.048 0.952 18 C -0.195 4.195 19 N -0.594 5.594 20 Si 0.776 3.224 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.170 1.170 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.119 11.046 16.247 26.059 hybrid contribution 0.692 -0.073 -1.073 1.279 sum -16.427 10.973 15.174 24.910 Atomic orbital electron populations 1.21783 0.93877 1.02558 1.02430 1.21593 0.96904 0.94132 1.02888 1.22399 0.87336 0.97860 0.98376 0.94457 1.22836 0.99604 0.82551 0.95635 1.87948 1.21138 1.28270 1.94525 1.22249 0.80882 0.97792 0.96015 0.91586 1.21755 1.02006 0.92919 1.03183 1.22902 1.01492 0.88436 0.97880 1.62259 1.09428 1.15363 1.39352 1.22169 0.95924 0.98986 0.89835 1.21501 0.94442 1.00301 0.97769 1.21285 0.95793 0.99196 0.96959 1.19530 0.94612 0.95801 0.94917 1.21565 0.93669 1.36877 1.05235 0.95249 1.26068 1.00859 0.94472 0.98064 1.70076 1.16799 1.42767 1.29787 0.85608 0.77469 0.80234 0.79043 1.19052 1.20897 1.16971 0.91367 0.92761 0.91674 0.91944 0.90955 0.92132 0.86706 0.92240 0.90942 0.89591 0.89186 0.94903 0.95482 0.89671 0.91539 0.92228 0.93301 0.93772 0.96377 0.96355 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.49 71.98 0.68 -1.32 16 2 C -0.12 -2.10 5.26 30.59 0.16 -1.94 16 3 C 0.05 1.01 2.07 44.92 0.09 1.10 16 4 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 5 C 0.07 1.31 5.94 72.01 0.43 1.74 16 6 O -0.40 -8.91 10.47 -148.98 -1.56 -10.47 16 7 C 0.09 1.80 3.42 30.63 0.10 1.91 16 8 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 9 C -0.14 -2.28 9.57 71.98 0.69 -1.59 16 10 C 0.02 0.48 4.73 86.31 0.41 0.89 16 11 N -0.54 -12.99 4.53 -870.00 -3.94 -16.93 16 12 C 0.06 1.55 4.76 86.31 0.41 1.96 16 13 C -0.10 -3.17 5.17 30.59 0.16 -3.01 16 14 C -0.09 -3.70 5.15 30.59 0.16 -3.55 16 15 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 16 C -0.54 -31.74 9.66 25.60 0.25 -31.50 16 17 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 18 C 0.00 0.10 5.47 84.65 0.46 0.57 16 19 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 20 Si 0.95 44.95 27.47 68.60 1.88 46.83 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 24 H 0.07 0.75 6.94 -2.39 -0.02 0.73 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 1.24 5.95 -2.39 -0.01 1.23 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.12 1.66 6.85 -2.39 -0.02 1.65 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 2.06 6.42 -2.39 -0.02 2.04 16 35 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.03 0.75 8.11 -2.39 -0.02 0.73 16 37 H 0.09 2.20 5.64 -2.39 -0.01 2.19 16 38 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.06 1.80 6.55 -2.39 -0.02 1.78 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.02 0.84 7.20 -2.38 -0.02 0.83 16 43 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 44 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -67.15 335.28 1.68 -65.47 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.87 Total: 10.90 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 4.12 Total: -35.15 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -3.64 Total: -77.58 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -1.56 Total: -10.47 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -67.15 1.68 -65.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385236626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.740 kcal (2) G-P(sol) polarization free energy of solvation -67.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds