Wall clock time and date at job start Mon Mar 30 2020 07:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.05234 * 2 1 4 4 C 1.54262 * 110.03499 * 238.58032 * 2 1 3 5 5 C 1.54892 * 104.19554 * 264.32855 * 4 2 1 6 6 C 1.54900 * 102.74702 * 322.05693 * 5 4 2 7 7 C 1.53879 * 110.02781 * 121.41315 * 2 1 3 8 8 O 1.42897 * 110.07685 * 359.97438 * 7 2 1 9 9 C 1.53004 * 110.02703 * 238.56979 * 7 2 1 10 10 N 1.46904 * 109.46826 * 186.37791 * 9 7 2 11 11 C 1.46896 * 111.00095 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99685 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00129 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46879 * 60.00177 * 19 17 15 21 21 H 1.48494 * 109.47196 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47151 * 300.00589 * 19 17 15 23 23 H 1.08999 * 109.47304 * 298.58824 * 1 2 3 24 24 H 1.09007 * 109.46935 * 58.58834 * 1 2 3 25 25 H 1.09001 * 109.47075 * 178.58494 * 1 2 3 26 26 H 1.09003 * 110.48553 * 145.64826 * 4 2 1 27 27 H 1.09003 * 110.59765 * 23.05573 * 4 2 1 28 28 H 1.08998 * 110.75892 * 203.74664 * 5 4 2 29 29 H 1.08993 * 110.76091 * 80.36996 * 5 4 2 30 30 H 1.09003 * 110.48193 * 279.26841 * 6 5 4 31 31 H 1.09000 * 110.48504 * 156.62160 * 6 5 4 32 32 H 0.96697 * 114.00431 * 179.28096 * 8 7 2 33 33 H 1.09001 * 109.46906 * 66.38701 * 9 7 2 34 34 H 1.08996 * 109.47710 * 306.38081 * 9 7 2 35 35 H 1.00902 * 111.00383 * 303.95801 * 10 9 7 36 36 H 1.08996 * 109.47194 * 60.00616 * 11 10 9 37 37 H 1.09001 * 109.47271 * 300.00180 * 11 10 9 38 38 H 1.09001 * 109.47502 * 60.00479 * 12 11 10 39 39 H 1.09001 * 109.47289 * 300.00275 * 12 11 10 40 40 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 41 41 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 42 42 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 43 43 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 44 44 H 0.96999 * 119.99910 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0586 -0.7555 -1.2368 5 6 2.3281 -2.1902 -0.7189 6 6 2.8875 -1.9406 0.7038 7 6 2.0571 -0.7535 1.2338 8 8 0.9641 -1.2328 2.0198 9 6 2.9408 0.1705 2.0742 10 7 3.5589 -0.5993 3.1621 11 6 4.4170 0.2572 3.9915 12 6 5.0421 -0.5781 5.1106 13 6 5.9354 0.3142 5.9749 14 6 6.5609 -0.5213 7.0936 15 6 7.4413 0.3574 7.9444 16 1 7.5440 1.4068 7.7109 17 6 8.1148 -0.1782 9.0218 18 7 7.9893 -1.4561 9.3065 19 14 9.2055 0.9110 10.0769 20 1 8.3905 2.0018 10.6696 21 1 9.8128 0.1002 11.1626 22 1 10.2807 1.4971 9.2368 23 1 -0.3634 0.4917 0.9024 24 1 -0.3633 0.5356 -0.8771 25 1 -0.3633 -1.0274 -0.0254 26 1 2.9812 -0.3001 -1.5965 27 1 1.3079 -0.7700 -2.0270 28 1 3.0677 -2.6932 -1.3419 29 1 1.4032 -2.7652 -0.6749 30 1 3.9440 -1.6765 0.6573 31 1 2.7401 -2.8196 1.3313 32 1 1.2322 -1.7264 2.8068 33 1 2.3324 0.9707 2.4956 34 1 3.7201 0.5997 1.4445 35 1 2.8578 -1.0603 3.7225 36 1 3.8193 1.0583 4.4261 37 1 5.2066 0.6866 3.3747 38 1 5.6400 -1.3790 4.6757 39 1 4.2528 -1.0078 5.7274 40 1 6.7247 0.7441 5.3583 41 1 5.3372 1.1148 6.4098 42 1 5.7719 -0.9517 7.7103 43 1 7.1592 -1.3217 6.6583 44 1 8.4635 -1.8330 10.0641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385335129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:32 Heat of formation + Delta-G solvation = -92.235868 kcal Electronic energy + Delta-G solvation = -18998.277958 eV Core-core repulsion = 16141.633866 eV Total energy + Delta-G solvation = -2856.644092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.94633 -36.51068 -35.17166 -33.97707 -32.14305 -31.24860 -29.54804 -27.50489 -25.99729 -24.41958 -22.87260 -21.50344 -20.89976 -19.99911 -19.58538 -16.81107 -16.26140 -16.12457 -15.86961 -15.42421 -14.52595 -14.35074 -14.17571 -13.90234 -13.31386 -13.13921 -12.74295 -12.69212 -12.58620 -12.34334 -11.89133 -11.67981 -11.46287 -11.39813 -11.12527 -10.98962 -10.83417 -10.77622 -10.61778 -10.56291 -10.45526 -10.39536 -9.97830 -9.63131 -9.24945 -9.00612 -8.46535 -8.31966 -5.97352 -3.99662 3.34368 3.38584 3.41141 3.97049 3.99386 4.33133 4.47491 4.53890 4.62068 4.93019 5.13114 5.17924 5.19731 5.30638 5.37512 5.38359 5.39719 5.47556 5.57216 5.63108 5.69695 5.74584 5.78719 5.87863 5.88409 5.98428 6.09227 6.13379 6.15869 6.22806 6.27523 6.49878 6.81171 6.92552 6.98953 7.21009 7.29278 7.51211 7.71029 7.87048 8.03592 8.46406 9.07640 9.64082 11.14001 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.053510 B = 0.002785 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.143730 B =10052.496351 C =10141.073025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.084 4.084 3 H 0.076 0.924 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.133 4.133 7 C 0.134 3.866 8 O -0.556 6.556 9 C 0.034 3.966 10 N -0.688 5.688 11 C 0.060 3.940 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.022 3.978 15 C -0.521 4.521 16 H 0.053 0.947 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.373 0.627 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.334 0.666 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.014 0.986 43 H 0.015 0.985 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.017 0.761 -20.238 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.103 4.103 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.171 4.171 7 C 0.093 3.907 8 O -0.362 6.362 9 C -0.095 4.095 10 N -0.319 5.319 11 C -0.068 4.068 12 C -0.153 4.153 13 C -0.147 4.147 14 C -0.015 4.015 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.221 0.779 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.152 0.848 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.783 0.707 -20.969 25.103 hybrid contribution 0.392 0.837 1.671 1.909 sum -13.392 1.544 -19.298 23.540 Atomic orbital electron populations 1.21507 0.93958 1.02167 1.00835 1.21755 0.97137 0.98697 0.92684 0.90611 1.22448 1.00796 0.95772 0.96812 1.22494 1.00783 0.96523 0.96468 1.22871 1.00221 0.97902 0.96060 1.21894 0.85401 0.93000 0.90364 1.86562 1.33654 1.75244 1.40725 1.22708 0.97204 0.95238 0.94383 1.60546 1.24990 1.32012 1.14369 1.22076 0.95805 0.94408 0.94546 1.21638 0.99320 0.98924 0.95429 1.21591 0.97324 0.98187 0.97622 1.19082 0.95335 0.94997 0.92129 1.21257 1.27304 0.95542 1.11866 0.92836 1.25037 0.96898 0.94995 0.97590 1.69958 1.43102 1.11770 1.28749 0.86666 0.80858 0.80488 0.80029 1.20280 1.21282 1.20256 0.92442 0.93527 0.92211 0.91542 0.91435 0.91688 0.91552 0.90218 0.91065 0.77938 0.94739 0.90244 0.84801 0.95515 0.91230 0.91633 0.92761 0.93454 0.93690 0.96750 0.96618 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.09 37.16 0.30 -0.83 16 2 C -0.08 -0.74 3.16 -89.50 -0.28 -1.02 16 3 H 0.08 0.64 7.67 -51.93 -0.40 0.24 16 4 C -0.12 -0.95 6.37 -25.07 -0.16 -1.10 16 5 C -0.13 -1.04 6.91 -24.73 -0.17 -1.21 16 6 C -0.13 -1.25 5.63 -25.07 -0.14 -1.39 16 7 C 0.13 1.28 1.10 -89.50 -0.10 1.18 16 8 O -0.56 -5.53 11.12 -35.23 -0.39 -5.92 16 9 C 0.03 0.36 4.51 -3.82 -0.02 0.34 16 10 N -0.69 -8.01 6.01 -113.78 -0.68 -8.69 16 11 C 0.06 0.83 5.69 -3.83 -0.02 0.81 16 12 C -0.12 -1.94 5.48 -26.73 -0.15 -2.09 16 13 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 14 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 15 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.48 7.85 -51.93 -0.41 0.07 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 31 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 32 H 0.37 2.93 7.66 45.56 0.35 3.28 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.33 3.56 7.34 -39.29 -0.29 3.27 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 345.09 15.07 5.20 5.20 Total: -1.00 -30.53 345.09 -9.43 -39.97 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.85 Total: 0.30 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -1.42 Total: -21.13 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.05 Total: -35.33 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.39 Total: -5.92 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.53 -9.43 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385335129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.268 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds