Wall clock time and date at job start Mon Mar 30 2020 07:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.05234 * 2 1 4 4 C 1.54262 * 110.03499 * 238.58032 * 2 1 3 5 5 C 1.54892 * 104.19554 * 264.32855 * 4 2 1 6 6 C 1.54900 * 102.74702 * 322.05693 * 5 4 2 7 7 C 1.53879 * 110.02781 * 121.41315 * 2 1 3 8 8 O 1.42897 * 110.07685 * 359.97438 * 7 2 1 9 9 C 1.53004 * 110.02703 * 238.56979 * 7 2 1 10 10 N 1.46904 * 109.46826 * 186.37791 * 9 7 2 11 11 C 1.46896 * 111.00095 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99685 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00129 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46879 * 60.00177 * 19 17 15 21 21 H 1.48494 * 109.47196 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47151 * 300.00589 * 19 17 15 23 23 H 1.08999 * 109.47304 * 298.58824 * 1 2 3 24 24 H 1.09007 * 109.46935 * 58.58834 * 1 2 3 25 25 H 1.09001 * 109.47075 * 178.58494 * 1 2 3 26 26 H 1.09003 * 110.48553 * 145.64826 * 4 2 1 27 27 H 1.09003 * 110.59765 * 23.05573 * 4 2 1 28 28 H 1.08998 * 110.75892 * 203.74664 * 5 4 2 29 29 H 1.08993 * 110.76091 * 80.36996 * 5 4 2 30 30 H 1.09003 * 110.48193 * 279.26841 * 6 5 4 31 31 H 1.09000 * 110.48504 * 156.62160 * 6 5 4 32 32 H 0.96697 * 114.00431 * 179.28096 * 8 7 2 33 33 H 1.09001 * 109.46906 * 66.38701 * 9 7 2 34 34 H 1.08996 * 109.47710 * 306.38081 * 9 7 2 35 35 H 1.00902 * 111.00383 * 303.95801 * 10 9 7 36 36 H 1.08996 * 109.47194 * 60.00616 * 11 10 9 37 37 H 1.09001 * 109.47271 * 300.00180 * 11 10 9 38 38 H 1.09001 * 109.47502 * 60.00479 * 12 11 10 39 39 H 1.09001 * 109.47289 * 300.00275 * 12 11 10 40 40 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 41 41 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 42 42 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 43 43 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 44 44 H 0.96999 * 119.99910 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0586 -0.7555 -1.2368 5 6 2.3281 -2.1902 -0.7189 6 6 2.8875 -1.9406 0.7038 7 6 2.0571 -0.7535 1.2338 8 8 0.9641 -1.2328 2.0198 9 6 2.9408 0.1705 2.0742 10 7 3.5589 -0.5993 3.1621 11 6 4.4170 0.2572 3.9915 12 6 5.0421 -0.5781 5.1106 13 6 5.9354 0.3142 5.9749 14 6 6.5609 -0.5213 7.0936 15 6 7.4413 0.3574 7.9444 16 1 7.5440 1.4068 7.7109 17 6 8.1148 -0.1782 9.0218 18 7 7.9893 -1.4561 9.3065 19 14 9.2055 0.9110 10.0769 20 1 8.3905 2.0018 10.6696 21 1 9.8128 0.1002 11.1626 22 1 10.2807 1.4971 9.2368 23 1 -0.3634 0.4917 0.9024 24 1 -0.3633 0.5356 -0.8771 25 1 -0.3633 -1.0274 -0.0254 26 1 2.9812 -0.3001 -1.5965 27 1 1.3079 -0.7700 -2.0270 28 1 3.0677 -2.6932 -1.3419 29 1 1.4032 -2.7652 -0.6749 30 1 3.9440 -1.6765 0.6573 31 1 2.7401 -2.8196 1.3313 32 1 1.2322 -1.7264 2.8068 33 1 2.3324 0.9707 2.4956 34 1 3.7201 0.5997 1.4445 35 1 2.8578 -1.0603 3.7225 36 1 3.8193 1.0583 4.4261 37 1 5.2066 0.6866 3.3747 38 1 5.6400 -1.3790 4.6757 39 1 4.2528 -1.0078 5.7274 40 1 6.7247 0.7441 5.3583 41 1 5.3372 1.1148 6.4098 42 1 5.7719 -0.9517 7.7103 43 1 7.1592 -1.3217 6.6583 44 1 8.4635 -1.8330 10.0641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385335129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:32 Heat of formation + Delta-G solvation = -111.736069 kcal Electronic energy + Delta-G solvation = -18999.123550 eV Core-core repulsion = 16141.633866 eV Total energy + Delta-G solvation = -2857.489684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.69441 -37.68979 -36.10235 -35.56936 -33.96177 -31.95134 -30.89492 -28.83143 -26.85766 -25.99322 -23.88041 -22.92709 -21.80453 -21.54889 -20.29414 -18.46630 -17.61237 -17.06049 -16.63379 -16.53999 -16.42098 -15.55436 -15.31023 -14.78443 -14.44414 -14.13183 -14.02597 -13.83095 -13.58784 -13.41180 -13.28291 -13.12301 -12.83548 -12.64758 -12.36547 -12.21248 -12.11671 -12.07896 -11.80557 -11.50095 -11.47683 -11.38445 -11.34706 -11.27458 -10.97502 -10.69454 -10.55393 -9.42719 -8.20374 -6.31973 1.39078 1.42441 1.50470 2.40493 3.05612 3.12244 3.27720 3.63677 3.78308 3.86289 4.09830 4.17232 4.28214 4.39825 4.48248 4.49951 4.52729 4.62186 4.66375 4.70615 4.74534 4.81935 4.90195 4.93031 5.03836 5.08123 5.11728 5.20867 5.23212 5.26406 5.28845 5.35063 5.38680 5.47473 5.54357 5.57971 5.77510 5.86271 5.98094 6.25294 6.37244 6.82976 6.85558 7.37330 8.91335 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.053510 B = 0.002785 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.143730 B =10052.496351 C =10141.073025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 H 0.080 0.920 4 C -0.117 4.117 5 C -0.124 4.124 6 C -0.132 4.132 7 C 0.137 3.863 8 O -0.565 6.565 9 C 0.039 3.961 10 N -0.688 5.688 11 C 0.072 3.928 12 C -0.104 4.104 13 C -0.098 4.098 14 C 0.023 3.977 15 C -0.547 4.547 16 H 0.059 0.941 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.266 1.266 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.380 0.620 33 H 0.031 0.969 34 H 0.081 0.919 35 H 0.341 0.659 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.049 0.951 42 H -0.010 1.010 43 H -0.011 1.011 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 1.964 -21.106 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.155 4.155 5 C -0.161 4.161 6 C -0.170 4.170 7 C 0.096 3.904 8 O -0.372 6.372 9 C -0.090 4.090 10 N -0.320 5.320 11 C -0.057 4.057 12 C -0.142 4.142 13 C -0.136 4.136 14 C -0.014 4.014 15 C -0.585 4.585 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.191 1.191 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.229 0.771 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.159 0.841 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.908 1.911 -21.849 25.970 hybrid contribution 0.401 0.414 1.942 2.026 sum -13.507 2.325 -19.906 24.168 Atomic orbital electron populations 1.21457 0.94032 1.01633 1.00885 1.21818 0.97064 0.99020 0.92732 0.90144 1.22446 1.01367 0.95121 0.96560 1.22486 1.00762 0.97016 0.95859 1.22832 0.99702 0.97621 0.96797 1.21900 0.85176 0.92894 0.90442 1.86553 1.34038 1.75408 1.41238 1.22704 0.97224 0.95182 0.93913 1.60473 1.25378 1.31758 1.14355 1.21835 0.96166 0.93970 0.93719 1.21454 0.98601 0.98328 0.95854 1.21401 0.97854 0.97938 0.96380 1.19012 0.94257 0.94783 0.93314 1.21731 1.27941 0.96191 1.12638 0.92228 1.26025 0.98423 0.96490 0.99078 1.70096 1.44155 1.13746 1.29468 0.85492 0.78885 0.78560 0.78070 1.19118 1.20750 1.19113 0.93601 0.92179 0.93061 0.90872 0.90495 0.90949 0.91851 0.91054 0.91595 0.77078 0.95100 0.90049 0.84076 0.95160 0.91060 0.92479 0.92755 0.93117 0.93236 0.99209 0.99230 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 8.09 71.98 0.58 -1.43 16 2 C -0.09 -1.39 3.16 -10.07 -0.03 -1.42 16 3 H 0.08 1.21 7.67 -2.38 -0.02 1.19 16 4 C -0.12 -1.61 6.37 31.67 0.20 -1.41 16 5 C -0.12 -1.87 6.91 31.89 0.22 -1.65 16 6 C -0.13 -2.33 5.63 31.67 0.18 -2.15 16 7 C 0.14 2.42 1.10 -10.07 -0.01 2.41 16 8 O -0.57 -10.66 11.12 -148.98 -1.66 -12.32 16 9 C 0.04 0.76 4.51 86.30 0.39 1.15 16 10 N -0.69 -15.12 6.01 -513.89 -3.09 -18.21 16 11 C 0.07 1.90 5.69 86.30 0.49 2.39 16 12 C -0.10 -3.47 5.48 30.60 0.17 -3.30 16 13 C -0.10 -4.03 5.15 30.60 0.16 -3.87 16 14 C 0.02 1.27 4.97 29.85 0.15 1.41 16 15 C -0.55 -31.86 9.11 25.60 0.23 -31.62 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 18 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 19 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H 0.04 0.85 7.87 -2.39 -0.02 0.83 16 24 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.05 0.92 7.87 -2.39 -0.02 0.90 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 0.92 7.85 -2.39 -0.02 0.90 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.39 7.85 -2.39 -0.02 1.37 16 31 H 0.07 1.22 8.05 -2.39 -0.02 1.20 16 32 H 0.38 5.64 7.66 -74.06 -0.57 5.07 16 33 H 0.03 0.63 8.14 -2.39 -0.02 0.62 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 35 H 0.34 6.83 7.34 -89.69 -0.66 6.17 16 36 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 42 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 43 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 44 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -64.94 345.09 0.47 -64.47 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -0.28 Total: 16.08 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 3.19 Total: -39.18 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -2.80 Total: -75.85 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -1.66 Total: -12.32 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -64.94 0.47 -64.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385335129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.266 kcal (2) G-P(sol) polarization free energy of solvation -64.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds