Wall clock time and date at job start Mon Mar 30 2020 07:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46658 * 2 1 4 4 C 1.53004 * 109.47130 * 240.00291 * 2 1 3 5 5 C 1.52997 * 109.46917 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47468 * 59.99990 * 5 4 2 7 7 C 1.52997 * 109.46815 * 299.99889 * 6 5 4 8 8 H 1.08999 * 109.47705 * 299.99660 * 7 6 5 9 9 C 1.53000 * 109.46890 * 179.97438 * 7 6 5 10 10 N 1.46899 * 109.46901 * 65.00182 * 9 7 6 11 11 C 1.46906 * 111.00141 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47215 * 179.97438 * 11 10 9 13 13 O 1.42897 * 109.46795 * 65.00306 * 12 11 10 14 14 C 1.42905 * 113.99899 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47179 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.52997 * 109.47310 * 60.00071 * 7 6 5 24 24 H 1.09000 * 109.46658 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47068 * 299.99430 * 1 2 3 26 26 H 1.08994 * 109.47567 * 60.00029 * 1 2 3 27 27 H 1.08998 * 109.46712 * 59.99581 * 4 2 1 28 28 H 1.08992 * 109.46897 * 299.99699 * 4 2 1 29 29 H 1.09006 * 109.47420 * 299.99823 * 5 4 2 30 30 H 1.08998 * 109.46855 * 180.02562 * 5 4 2 31 31 H 1.08999 * 109.47327 * 179.97438 * 6 5 4 32 32 H 1.09006 * 109.46937 * 59.99537 * 6 5 4 33 33 H 1.09003 * 109.47375 * 304.99985 * 9 7 6 34 34 H 1.09002 * 109.46990 * 184.99976 * 9 7 6 35 35 H 1.00895 * 111.00221 * 56.04803 * 10 9 7 36 36 H 1.09000 * 109.46758 * 60.00031 * 11 10 9 37 37 H 1.08993 * 109.47047 * 300.00608 * 11 10 9 38 38 H 1.08995 * 109.47274 * 305.00344 * 12 11 10 39 39 H 1.09002 * 109.46559 * 184.99809 * 12 11 10 40 40 H 1.09007 * 109.46810 * 59.99780 * 14 13 12 41 41 H 1.09003 * 109.46936 * 300.00543 * 14 13 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.47794 * 59.99789 * 23 7 6 44 44 H 1.09005 * 109.47217 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0806 -1.4415 -0.0004 7 6 3.5706 -0.7203 1.2488 8 1 3.9335 0.3075 1.2487 9 6 4.0806 -1.4416 2.4980 10 7 5.5446 -1.3378 2.5599 11 6 6.0710 -2.0201 3.7496 12 6 7.5953 -1.8912 3.7789 13 8 7.9540 -0.5175 3.9412 14 6 9.3636 -0.2858 3.9818 15 6 9.6256 1.1880 4.1554 16 1 8.7985 1.8787 4.2279 17 6 10.9213 1.6547 4.2217 18 7 11.9285 0.8136 4.1339 19 14 11.2461 3.4817 4.4361 20 1 12.7109 3.7225 4.4785 21 1 10.6543 4.2268 3.2960 22 1 10.6314 3.9482 5.7048 23 6 2.0406 -0.7209 1.2492 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6766 -0.2073 -2.1392 28 1 1.6767 -1.7488 -1.2493 29 1 3.9330 0.3072 -1.2498 30 1 3.9333 -1.2340 -2.1398 31 1 5.1706 -1.4415 -0.0008 32 1 3.7176 -2.4694 -0.0002 33 1 3.7923 -2.4919 2.4544 34 1 3.6460 -0.9821 3.3858 35 1 5.8401 -0.3734 2.5362 36 1 5.7965 -3.0744 3.7150 37 1 5.6501 -1.5644 4.6458 38 1 8.0097 -2.2669 2.8434 39 1 7.9930 -2.4714 4.6116 40 1 9.8151 -0.6284 3.0507 41 1 9.7977 -0.8328 4.8188 42 1 12.8401 1.1420 4.1802 43 1 1.6775 -1.7487 1.2494 44 1 1.6772 -0.2075 2.1395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385865025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:09 Heat of formation + Delta-G solvation = -92.567532 kcal Electronic energy + Delta-G solvation = -18999.707257 eV Core-core repulsion = 16143.048783 eV Total energy + Delta-G solvation = -2856.658474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.17615 -37.12574 -35.44317 -32.90677 -32.45615 -31.45552 -28.60019 -26.77061 -26.41675 -24.27019 -22.34479 -22.06343 -21.28391 -20.43118 -19.79631 -16.43082 -15.89695 -15.52232 -15.34687 -14.83146 -14.63745 -14.58100 -14.35203 -14.07002 -13.64628 -13.31132 -13.08529 -12.51876 -12.37028 -12.11864 -11.88880 -11.70415 -11.63691 -11.44304 -11.18691 -11.04974 -10.85473 -10.80886 -10.72960 -10.58188 -10.45111 -10.10088 -10.04351 -9.88853 -9.10662 -8.80619 -8.15573 -8.13135 -6.09813 -4.11667 3.32629 3.35289 3.39060 4.30007 4.35783 4.55148 4.63569 4.76618 4.95209 4.98960 5.10967 5.25321 5.26476 5.32225 5.40759 5.43781 5.48873 5.54154 5.57075 5.64770 5.72626 5.76433 5.77370 5.81858 5.90095 5.93971 6.07779 6.13497 6.15707 6.19698 6.23268 6.28488 6.38255 6.47899 6.50360 7.13004 7.28870 7.45596 7.70925 7.79766 8.16713 8.59568 9.01272 9.53059 11.01691 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.003448 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.558963 B = 8118.669196 C = 8620.107166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.105 4.105 7 C -0.085 4.085 8 H 0.070 0.930 9 C 0.063 3.937 10 N -0.686 5.686 11 C 0.066 3.934 12 C 0.062 3.938 13 O -0.399 6.399 14 C 0.198 3.802 15 C -0.515 4.515 16 H 0.065 0.935 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.274 1.274 22 H -0.275 1.275 23 C -0.107 4.107 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.354 0.646 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.006 0.994 41 H 0.003 0.997 42 H 0.264 0.736 43 H 0.060 0.940 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.383 -5.171 -7.936 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.143 4.143 7 C -0.104 4.104 8 H 0.088 0.912 9 C -0.066 4.066 10 N -0.318 5.318 11 C -0.063 4.063 12 C -0.016 4.016 13 O -0.320 6.320 14 C 0.123 3.877 15 C -0.554 4.554 16 H 0.083 0.917 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.735 3.265 20 H -0.212 1.212 21 H -0.200 1.200 22 H -0.201 1.201 23 C -0.145 4.145 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.174 0.826 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.024 0.976 41 H 0.021 0.979 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.198 -5.571 -8.323 22.545 hybrid contribution 0.283 1.251 0.854 1.540 sum -19.915 -4.320 -7.469 21.704 Atomic orbital electron populations 1.21832 0.95568 1.01592 1.01445 1.21125 0.95033 0.99769 0.95145 0.91291 1.21593 0.96004 1.00328 0.97117 1.21575 0.95115 1.01012 0.98286 1.21469 1.01722 0.98298 0.92768 1.21148 0.94411 0.99905 0.94887 0.91195 1.21982 0.88499 1.00112 0.96053 1.60470 1.08678 1.22097 1.40598 1.21932 0.94553 0.98518 0.91317 1.22293 0.93598 0.86372 0.99300 1.87784 1.27840 1.22128 1.94199 1.20163 0.75176 0.96945 0.95372 1.21019 0.92304 0.91909 1.50135 0.91690 1.24953 0.95664 0.98681 0.95211 1.69956 0.98952 1.34603 1.50259 0.86396 0.76965 0.84225 0.78880 1.21157 1.19988 1.20066 1.21606 0.95152 1.00503 0.97274 0.92854 0.92831 0.92897 0.92501 0.92244 0.92087 0.92283 0.90471 0.92630 0.91582 0.95715 0.82622 0.90864 0.94947 0.93586 0.94268 0.97630 0.97873 0.92600 0.92090 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.20 37.16 0.34 -0.76 16 2 C -0.09 -0.80 2.72 -90.62 -0.25 -1.05 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.11 -0.97 5.20 -26.73 -0.14 -1.11 16 5 C -0.12 -1.20 5.92 -26.73 -0.16 -1.35 16 6 C -0.11 -1.15 5.09 -26.73 -0.14 -1.29 16 7 C -0.08 -0.93 2.33 -90.62 -0.21 -1.14 16 8 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 9 C 0.06 0.77 5.07 -3.82 -0.02 0.75 16 10 N -0.69 -10.28 5.96 -113.78 -0.68 -10.96 16 11 C 0.07 1.02 6.11 -3.82 -0.02 1.00 16 12 C 0.06 1.18 6.28 37.16 0.23 1.42 16 13 O -0.40 -9.65 9.85 -35.23 -0.35 -10.00 16 14 C 0.20 5.49 5.69 36.00 0.20 5.70 16 15 C -0.52 -15.30 9.43 -34.44 -0.32 -15.62 16 16 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 19 Si 0.91 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.11 -1.00 4.48 -26.73 -0.12 -1.12 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.35 5.95 8.29 -39.29 -0.33 5.62 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.01 0.17 8.14 -51.92 -0.42 -0.25 16 41 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -30.07 347.94 -9.49 -39.57 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.73 Total: -1.34 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.70 Total: -13.05 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.06 Total: -37.37 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.35 Total: -10.00 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.07 -9.49 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385865025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.002 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds