Wall clock time and date at job start Mon Mar 30 2020 07:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47386 * 2 1 4 4 C 1.52998 * 109.46996 * 119.99295 * 2 1 3 5 5 C 1.52999 * 109.47068 * 60.00360 * 4 2 1 6 6 C 1.52998 * 109.47223 * 59.99621 * 5 4 2 7 7 C 1.52998 * 109.47408 * 300.00171 * 6 5 4 8 8 C 1.53000 * 109.47482 * 239.99542 * 2 1 3 9 9 H 1.08997 * 109.47157 * 179.97438 * 8 2 1 10 10 C 1.52998 * 109.46871 * 60.00056 * 8 2 1 11 11 N 1.46900 * 109.47093 * 175.00168 * 10 8 2 12 12 C 1.46905 * 111.00154 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47150 * 180.02562 * 12 11 10 14 14 O 1.42898 * 109.47319 * 64.99949 * 13 12 11 15 15 C 1.42902 * 114.00186 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47205 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00105 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00129 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99722 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00218 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47019 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47128 * 119.99695 * 20 18 16 23 23 H 1.48494 * 109.47116 * 239.99833 * 20 18 16 24 24 H 1.08996 * 109.46893 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46950 * 300.00750 * 1 2 3 26 26 H 1.09004 * 109.46705 * 60.00450 * 1 2 3 27 27 H 1.09007 * 109.47460 * 179.97438 * 4 2 1 28 28 H 1.08997 * 109.47799 * 300.00244 * 4 2 1 29 29 H 1.08994 * 109.47723 * 179.97438 * 5 4 2 30 30 H 1.08997 * 109.47328 * 299.99834 * 5 4 2 31 31 H 1.09007 * 109.47211 * 60.00175 * 6 5 4 32 32 H 1.08996 * 109.47542 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.47409 * 300.00230 * 7 6 5 34 34 H 1.09000 * 109.47517 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.47116 * 55.00156 * 10 8 2 36 36 H 1.08999 * 109.47214 * 295.00297 * 10 8 2 37 37 H 1.00895 * 110.99884 * 56.04570 * 11 10 8 38 38 H 1.09001 * 109.47063 * 59.99499 * 12 11 10 39 39 H 1.09004 * 109.46681 * 300.00124 * 12 11 10 40 40 H 1.09002 * 109.47153 * 304.99641 * 13 12 11 41 41 H 1.09001 * 109.46832 * 184.99832 * 13 12 11 42 42 H 1.09001 * 109.46918 * 299.99649 * 15 14 13 43 43 H 1.08999 * 109.46857 * 59.99535 * 15 14 13 44 44 H 0.96998 * 119.99585 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5300 -2.1636 1.2494 6 6 2.0400 -2.8849 0.0003 7 6 1.5301 -2.1638 -1.2491 8 6 2.0401 -0.7213 -1.2492 9 1 3.1301 -0.7209 -1.2493 10 6 1.5301 -0.0002 -2.4984 11 7 2.1159 -0.6195 -3.6948 12 6 1.6481 0.0490 -4.9164 13 6 2.2777 -0.6228 -6.1384 14 8 1.8053 -1.9677 -6.2389 15 6 2.3359 -2.6884 -7.3529 16 6 1.7739 -4.0867 -7.3603 17 1 1.0810 -4.3943 -6.5910 18 6 2.1449 -4.9735 -8.3486 19 7 2.9889 -4.5991 -9.2851 20 14 1.4487 -6.7070 -8.3574 21 1 0.5285 -6.8767 -7.2044 22 1 0.7054 -6.9354 -9.6225 23 1 2.5594 -7.6870 -8.2521 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.1300 -0.7215 1.2492 28 1 1.6767 -0.2073 2.1393 29 1 1.8936 -2.6775 2.1392 30 1 0.4401 -2.1637 1.2494 31 1 3.1301 -2.8849 0.0002 32 1 1.6764 -3.9124 0.0001 33 1 0.4401 -2.1638 -1.2491 34 1 1.8937 -2.6775 -2.1390 35 1 1.8185 1.0501 -2.4548 36 1 0.4438 -0.0770 -2.5444 37 1 1.9168 -1.6082 -3.7244 38 1 1.9376 1.0995 -4.8893 39 1 0.5626 -0.0272 -4.9793 40 1 3.3625 -0.6256 -6.0328 41 1 2.0016 -0.0725 -7.0379 42 1 2.0614 -2.1812 -8.2778 43 1 3.4219 -2.7341 -7.2720 44 1 3.2496 -5.2229 -9.9806 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385876112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:27 Heat of formation + Delta-G solvation = -85.969708 kcal Electronic energy + Delta-G solvation = -19381.823688 eV Core-core repulsion = 16525.451317 eV Total energy + Delta-G solvation = -2856.372371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.61650 -37.10013 -35.27882 -32.75776 -32.19896 -31.34355 -28.61573 -27.10355 -26.44108 -24.41557 -22.41590 -22.23142 -21.22824 -21.00081 -18.43761 -16.47682 -16.03242 -15.92017 -15.39384 -15.24232 -14.62065 -14.35473 -14.24911 -13.65316 -13.63321 -13.37322 -12.91733 -12.76980 -12.63635 -12.13713 -11.81793 -11.62982 -11.53746 -11.40178 -11.25121 -11.11483 -10.86344 -10.77368 -10.69968 -10.58398 -10.22500 -10.09724 -9.95123 -9.86312 -9.08120 -8.81552 -8.15793 -8.11945 -6.10174 -4.11836 3.29381 3.35801 3.41983 4.34469 4.35978 4.57836 4.62277 4.74800 4.97049 5.11016 5.13666 5.23065 5.26410 5.27371 5.32051 5.40999 5.51299 5.58853 5.60702 5.66762 5.72274 5.77501 5.84000 5.87136 5.91330 6.02644 6.07474 6.10255 6.17499 6.19174 6.23904 6.28712 6.37708 6.42598 6.52477 7.13112 7.30443 7.45548 7.72853 7.80138 8.16538 8.59341 9.01747 9.53096 11.01453 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023645 B = 0.003996 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.890810 B = 7005.772247 C = 7861.795361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.121 4.121 8 C -0.079 4.079 9 H 0.078 0.922 10 C 0.062 3.938 11 N -0.689 5.689 12 C 0.066 3.934 13 C 0.062 3.938 14 O -0.400 6.400 15 C 0.197 3.803 16 C -0.514 4.514 17 H 0.066 0.934 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.282 1.282 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.029 0.971 37 H 0.355 0.645 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.046 0.954 41 H 0.040 0.960 42 H 0.004 0.996 43 H 0.006 0.994 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 9.392 19.153 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.158 4.158 8 C -0.098 4.098 9 H 0.096 0.904 10 C -0.067 4.067 11 N -0.323 5.323 12 C -0.064 4.064 13 C -0.016 4.016 14 O -0.320 6.320 15 C 0.122 3.878 16 C -0.552 4.552 17 H 0.084 0.916 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.734 3.266 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.208 1.208 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.175 0.825 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.022 0.978 43 H 0.024 0.976 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.411 9.599 19.141 21.549 hybrid contribution -0.956 -1.052 -0.487 1.502 sum -3.367 8.548 18.654 20.794 Atomic orbital electron populations 1.21998 0.95573 1.02176 1.01280 1.21082 0.95795 0.98940 0.94578 0.91471 1.21543 1.00533 0.95717 0.97224 1.21576 1.00873 0.95607 0.97799 1.21502 1.00834 0.98761 0.94432 1.21658 1.00654 0.95302 0.98222 1.21153 1.00945 0.94660 0.92996 0.90386 1.22032 0.96314 0.98400 0.89998 1.60502 1.61945 1.08913 1.00906 1.21934 0.97449 0.97494 0.89474 1.22300 0.97929 0.85937 0.95443 1.87783 1.70253 1.22224 1.51701 1.20177 0.93591 0.91005 0.82982 1.21093 1.27095 0.95565 1.11440 0.91588 1.24948 0.95187 0.99240 0.95135 1.69977 1.33453 1.35922 1.14401 0.86297 0.78841 0.83424 0.78030 1.19512 1.20863 1.20819 0.91987 0.93219 0.92595 0.92053 0.92371 0.92508 0.91878 0.92000 0.92162 0.92004 0.91174 0.91678 0.95335 0.82455 0.90843 0.94958 0.93581 0.94233 0.97845 0.97618 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.15 37.16 0.30 -1.06 16 2 C -0.08 -0.78 2.72 -90.62 -0.25 -1.03 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -0.96 5.45 -26.73 -0.15 -1.11 16 5 C -0.12 -1.07 5.65 -26.73 -0.15 -1.22 16 6 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 7 C -0.12 -1.39 4.70 -26.73 -0.13 -1.52 16 8 C -0.08 -0.87 2.17 -90.62 -0.20 -1.06 16 9 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 10 C 0.06 0.76 4.64 -3.83 -0.02 0.74 16 11 N -0.69 -10.55 6.50 -113.77 -0.74 -11.29 16 12 C 0.07 1.03 6.11 -3.82 -0.02 1.01 16 13 C 0.06 1.18 6.28 37.16 0.23 1.42 16 14 O -0.40 -9.69 9.85 -35.23 -0.35 -10.03 16 15 C 0.20 5.47 5.69 36.00 0.20 5.67 16 16 C -0.51 -15.23 9.43 -34.44 -0.32 -15.55 16 17 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 20 Si 0.91 21.94 29.54 -169.99 -5.02 16.91 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 31 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 34 H 0.07 0.94 6.68 -51.93 -0.35 0.59 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.35 6.71 -51.93 -0.35 0.00 16 37 H 0.35 6.03 6.54 -39.29 -0.26 5.77 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 43 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -30.24 335.25 -9.16 -39.40 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.10 Total: -0.15 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.75 Total: -13.53 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.00 Total: -37.66 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.35 Total: -10.03 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.24 -9.16 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385876112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.565 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds