Wall clock time and date at job start Mon Mar 30 2020 07:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46682 * 2 1 4 4 N 1.46898 * 109.47032 * 119.99946 * 2 1 3 5 5 C 1.46892 * 111.00040 * 166.93400 * 4 2 1 6 6 C 1.50705 * 109.46759 * 293.95366 * 5 4 2 7 7 H 1.07995 * 120.00026 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99819 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99839 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47472 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47315 * 120.00245 * 10 8 6 13 13 H 1.48503 * 109.47318 * 239.99754 * 10 8 6 14 14 C 1.46904 * 111.00091 * 290.88664 * 4 2 1 15 15 C 1.52994 * 109.47468 * 163.76751 * 14 4 2 16 16 C 1.53006 * 109.47116 * 297.05042 * 15 14 4 17 17 C 1.52994 * 109.47116 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.47363 * 59.99529 * 17 16 15 19 19 O 1.42903 * 109.47293 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47302 * 299.99973 * 18 17 16 21 21 C 1.52996 * 109.47363 * 177.04571 * 15 14 4 22 22 H 1.09000 * 109.47201 * 305.70901 * 1 2 3 23 23 H 1.09000 * 109.46774 * 65.71048 * 1 2 3 24 24 H 1.08996 * 109.46657 * 185.70263 * 1 2 3 25 25 H 1.08995 * 109.47149 * 240.00128 * 2 1 3 26 26 H 1.09004 * 109.46986 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47428 * 299.99850 * 3 2 1 28 28 H 1.09007 * 109.46813 * 60.00050 * 3 2 1 29 29 H 1.09000 * 109.47224 * 53.95100 * 5 4 2 30 30 H 1.09006 * 109.47511 * 173.95394 * 5 4 2 31 31 H 0.96993 * 120.00049 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.47093 * 43.76487 * 14 4 2 33 33 H 1.09004 * 109.46762 * 283.76896 * 14 4 2 34 34 H 1.08998 * 109.47075 * 57.04220 * 15 14 4 35 35 H 1.08998 * 109.46477 * 299.99544 * 16 15 14 36 36 H 1.08998 * 109.46982 * 59.99391 * 16 15 14 37 37 H 1.09006 * 109.46859 * 299.99440 * 17 16 15 38 38 H 1.09005 * 109.47082 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.47106 * 60.00546 * 18 17 16 40 40 H 0.96696 * 114.00445 * 300.00891 * 19 18 17 41 41 H 1.08998 * 109.46791 * 300.00140 * 20 18 17 42 42 H 1.08998 * 109.46895 * 180.02562 * 20 18 17 43 43 H 1.08992 * 109.47421 * 299.99998 * 21 15 14 44 44 H 1.09000 * 109.47106 * 60.00546 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4546 -0.9865 1.0886 6 6 3.6789 -1.9844 -0.0182 7 1 2.8393 -2.3627 -0.5825 8 6 4.9558 -2.4153 -0.3097 9 7 5.9781 -1.9551 0.3779 10 14 5.2336 -3.6528 -1.6811 11 1 3.9304 -4.0105 -2.2966 12 1 6.1209 -3.0577 -2.7125 13 1 5.8706 -4.8735 -1.1248 14 6 1.7342 0.0875 2.4111 15 6 1.8777 -0.8105 3.6414 16 6 0.8409 -1.9339 3.5766 17 6 0.9849 -2.8323 4.8066 18 6 0.7602 -2.0033 6.0727 19 8 0.8940 -2.8426 7.2216 20 6 1.7970 -0.8800 6.1376 21 6 1.6527 0.0188 4.9073 22 1 -0.3633 0.5998 0.8344 23 1 -0.3633 0.4227 -0.9367 24 1 -0.3632 -1.0226 0.1021 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 3.9975 -0.0681 0.8653 30 1 3.8144 -1.4014 2.0303 31 1 6.8763 -2.2585 0.1731 32 1 0.7171 0.4763 2.3617 33 1 2.4373 0.9174 2.4830 34 1 2.8789 -1.2410 3.6623 35 1 -0.1602 -1.5034 3.5557 36 1 1.0013 -2.5247 2.6747 37 1 1.9861 -3.2627 4.8269 38 1 0.2459 -3.6323 4.7606 39 1 -0.2410 -1.5730 6.0524 40 1 0.2666 -3.5779 7.2468 41 1 2.7982 -1.3105 6.1580 42 1 1.6372 -0.2898 7.0399 43 1 2.3912 0.8190 4.9535 44 1 0.6514 0.4492 4.8865 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390143039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:32 Heat of formation + Delta-G solvation = -78.286676 kcal Electronic energy + Delta-G solvation = -20393.409215 eV Core-core repulsion = 17537.370006 eV Total energy + Delta-G solvation = -2856.039210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.14079 -37.55951 -35.39243 -32.76190 -31.39465 -30.53888 -29.48874 -26.68551 -26.55836 -24.08942 -22.47091 -22.17257 -21.03666 -19.52188 -18.42886 -17.13947 -16.21191 -15.62381 -14.85747 -14.56418 -14.39990 -14.17916 -13.98049 -13.39053 -13.08070 -12.84180 -12.54114 -12.28205 -12.07501 -11.92452 -11.91412 -11.49839 -11.38682 -11.14967 -10.92341 -10.79335 -10.65088 -10.61654 -10.48659 -10.23306 -10.17002 -9.93331 -9.84053 -9.50623 -9.48863 -9.06885 -8.39817 -7.10686 -5.99922 -4.00153 3.31582 3.39415 3.43735 4.25298 4.44561 4.80474 4.90622 5.06018 5.24242 5.35469 5.39186 5.49353 5.57168 5.61660 5.68766 5.73994 5.81684 5.83716 5.96669 6.05521 6.07988 6.12047 6.19437 6.25343 6.31314 6.32245 6.36716 6.40040 6.47735 6.56076 6.58891 6.82172 6.90069 6.93055 6.94556 7.40011 7.47777 7.68009 7.85612 8.18053 8.30661 8.62750 9.08289 9.63719 11.10899 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.006322 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.607613 B = 4427.586216 C = 5282.272247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.080 3.920 3 C -0.179 4.179 4 N -0.527 5.527 5 C 0.190 3.810 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.060 3.940 15 C -0.085 4.085 16 C -0.098 4.098 17 C -0.151 4.151 18 C 0.105 3.895 19 O -0.574 6.574 20 C -0.109 4.109 21 C -0.110 4.110 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.046 0.954 29 H -0.008 1.008 30 H 0.031 0.969 31 H 0.259 0.741 32 H 0.059 0.941 33 H 0.024 0.976 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.374 0.626 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.518 3.026 7.408 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.238 4.238 4 N -0.250 5.250 5 C 0.065 3.935 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.069 4.069 15 C -0.103 4.103 16 C -0.135 4.135 17 C -0.189 4.189 18 C 0.047 3.953 19 O -0.379 6.379 20 C -0.147 4.147 21 C -0.148 4.148 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.010 0.990 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.220 0.780 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.092 2.986 7.586 13.766 hybrid contribution 0.371 -0.259 -0.947 1.049 sum -10.721 2.727 6.639 12.902 Atomic orbital electron populations 1.21844 0.96292 1.01564 0.99932 1.21579 0.93631 0.91878 0.95809 1.22434 1.02220 0.98741 1.00439 1.62295 1.20635 1.42428 0.99685 1.19766 0.80972 0.95230 0.97547 1.21210 0.92342 1.24066 1.16511 0.91962 1.24974 0.96145 0.96785 0.96719 1.69967 0.98912 1.44251 1.40719 0.86514 0.78145 0.81205 0.81986 1.19714 1.21223 1.21108 1.22047 0.99283 0.94367 0.91174 1.21189 1.00574 0.95698 0.92876 1.21357 0.97878 0.96683 0.97620 1.22291 1.02600 0.98535 0.95493 1.21881 0.98116 0.90823 0.84528 1.86496 1.62306 1.44060 1.45031 1.21455 0.99363 0.95720 0.98143 1.21537 1.01519 0.97782 0.93982 0.93750 0.93545 0.92290 0.89097 0.92173 0.93490 0.93537 0.99023 0.95059 0.93098 0.92278 0.95827 0.90406 0.93119 0.89607 0.91115 0.92419 0.93244 0.77983 0.91202 0.91947 0.91700 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.09 37.16 0.34 -1.78 16 2 C 0.08 1.50 2.77 -67.71 -0.19 1.31 16 3 C -0.18 -3.11 8.45 37.16 0.31 -2.79 16 4 N -0.53 -10.71 3.74 -228.08 -0.85 -11.56 16 5 C 0.19 4.78 4.47 -4.98 -0.02 4.76 16 6 C -0.50 -13.80 8.32 -34.44 -0.29 -14.09 16 7 H 0.06 1.71 7.22 -52.49 -0.38 1.33 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 10 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.06 1.03 2.99 -3.82 -0.01 1.02 16 15 C -0.08 -1.36 2.19 -90.62 -0.20 -1.56 16 16 C -0.10 -1.47 5.07 -26.73 -0.14 -1.61 16 17 C -0.15 -2.05 5.54 -26.74 -0.15 -2.20 16 18 C 0.10 1.32 3.47 -26.73 -0.09 1.23 16 19 O -0.57 -7.20 13.32 -35.23 -0.47 -7.67 16 20 C -0.11 -1.45 5.58 -26.70 -0.15 -1.59 16 21 C -0.11 -1.47 5.21 -26.71 -0.14 -1.61 16 22 H 0.04 0.63 6.63 -51.93 -0.34 0.28 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.09 1.93 6.61 -51.93 -0.34 1.58 16 26 H 0.06 1.19 6.71 -51.93 -0.35 0.84 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.74 6.66 -51.93 -0.35 0.39 16 29 H -0.01 -0.22 6.56 -51.93 -0.34 -0.56 16 30 H 0.03 0.85 6.38 -51.93 -0.33 0.52 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.06 0.93 6.19 -51.93 -0.32 0.61 16 33 H 0.02 0.43 7.17 -51.93 -0.37 0.06 16 34 H 0.08 1.49 6.52 -51.93 -0.34 1.15 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.52 7.69 -51.93 -0.40 1.12 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.37 3.08 9.08 45.56 0.41 3.49 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -29.54 331.10 -8.67 -38.21 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.23 Total: 2.78 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -0.82 Total: -17.48 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.12 Total: -37.39 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.47 Total: -7.67 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.54 -8.67 -38.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390143039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.081 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds