Wall clock time and date at job start Mon Mar 30 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 H 1.08997 * 109.46810 * 304.69687 * 3 2 1 5 5 C 1.50704 * 109.47028 * 184.69706 * 3 2 1 6 6 H 1.08004 * 119.99432 * 239.99975 * 5 3 2 7 7 C 1.37868 * 119.99891 * 60.00221 * 5 3 2 8 8 N 1.31513 * 120.00294 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99811 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47165 * 59.99659 * 9 7 5 11 11 H 1.48504 * 109.47054 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46785 * 299.99447 * 9 7 5 13 13 N 1.46901 * 109.47181 * 64.69569 * 3 2 1 14 14 C 1.46901 * 111.00283 * 256.62393 * 13 3 2 15 15 H 1.09000 * 112.84350 * 35.84892 * 14 13 3 16 16 C 1.53774 * 113.61379 * 264.65499 * 14 13 3 17 17 H 1.09004 * 113.60988 * 156.25279 * 16 14 13 18 18 C 1.52993 * 113.61756 * 25.43053 * 16 14 13 19 19 C 1.53777 * 87.08090 * 270.87788 * 16 14 13 20 20 H 1.09001 * 113.61870 * 219.93656 * 19 16 14 21 21 O 1.42902 * 113.61209 * 89.11748 * 19 16 14 22 22 C 1.42901 * 114.00044 * 109.50840 * 21 19 16 23 23 C 1.53778 * 113.61443 * 167.04106 * 14 13 3 24 24 C 1.53004 * 113.61385 * 203.66496 * 23 14 13 25 25 C 1.52995 * 113.61834 * 334.57542 * 23 14 13 26 26 H 1.09002 * 109.47799 * 296.80863 * 1 2 3 27 27 H 1.09011 * 109.47007 * 56.80542 * 1 2 3 28 28 H 1.09000 * 109.47528 * 176.80110 * 1 2 3 29 29 H 1.08998 * 109.47322 * 240.00031 * 2 1 3 30 30 H 1.08998 * 109.46804 * 119.99580 * 2 1 3 31 31 H 0.97004 * 119.99957 * 179.97438 * 8 7 5 32 32 H 1.00901 * 111.00079 * 132.67208 * 13 3 2 33 33 H 1.08995 * 109.47241 * 60.00138 * 18 16 14 34 34 H 1.09010 * 109.47287 * 180.02562 * 18 16 14 35 35 H 1.09003 * 109.47298 * 300.00115 * 18 16 14 36 36 H 1.08999 * 109.47404 * 180.02562 * 22 21 19 37 37 H 1.09008 * 109.46739 * 300.00024 * 22 21 19 38 38 H 1.08999 * 109.47287 * 59.99964 * 22 21 19 39 39 H 1.08999 * 109.46715 * 60.00718 * 24 23 14 40 40 H 1.08995 * 109.46926 * 180.02562 * 24 23 14 41 41 H 1.08996 * 109.47189 * 300.00585 * 24 23 14 42 42 H 1.09001 * 109.47566 * 59.99145 * 25 23 14 43 43 H 1.09002 * 109.47095 * 180.02562 * 25 23 14 44 44 H 1.09006 * 109.46598 * 299.99566 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6095 1.9800 -0.8449 5 6 3.5425 1.4441 -0.1164 6 1 4.1438 1.8901 0.6621 7 6 4.1493 0.8763 -1.2164 8 7 3.4170 0.3329 -2.1640 9 14 6.0118 0.8776 -1.3603 10 1 6.5977 0.1449 -0.2092 11 1 6.4110 0.2110 -2.6259 12 1 6.5072 2.2775 -1.3600 13 7 1.6450 2.1015 1.2521 14 6 0.5086 3.0067 1.0350 15 1 -0.1989 2.6283 0.2972 16 6 0.9222 4.4688 0.7987 17 1 0.1803 5.0491 0.2499 18 6 2.3348 4.6223 0.2315 19 6 0.8469 4.6542 2.3233 20 1 0.4128 5.6069 2.6266 21 8 2.0737 4.3642 2.9964 22 6 2.7323 5.5163 3.5265 23 6 -0.1557 3.4847 2.3369 24 6 -1.6107 3.9228 2.1576 25 6 0.0365 2.5237 3.5118 26 1 -0.3635 0.4635 0.9172 27 1 -0.3633 0.5627 -0.8601 28 1 -0.3634 -1.0260 -0.0573 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8439 -0.0663 -2.9382 32 1 2.4246 2.5922 1.6639 33 1 2.3995 4.1070 -0.7268 34 1 2.5572 5.6802 0.0914 35 1 3.0543 4.1890 0.9263 36 1 3.6548 5.2121 4.0210 37 1 2.9656 6.2066 2.7158 38 1 2.0791 6.0090 4.2466 39 1 -2.1983 3.0856 1.7810 40 1 -2.0133 4.2472 3.1171 41 1 -1.6567 4.7479 1.4469 42 1 1.1010 2.4054 3.7141 43 1 -0.4593 2.9261 4.3952 44 1 -0.3959 1.5545 3.2628 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390819469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:53 Heat of formation + Delta-G solvation = -49.310781 kcal Electronic energy + Delta-G solvation = -21286.524712 eV Core-core repulsion = 18431.741992 eV Total energy + Delta-G solvation = -2854.782721 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.59597 -37.70341 -36.60536 -33.89606 -33.02484 -31.44475 -28.75433 -28.17341 -28.12264 -26.68937 -25.02443 -23.94745 -21.50966 -21.05792 -19.49797 -18.34520 -17.41557 -16.67852 -16.42474 -16.13626 -15.61831 -15.34397 -15.08440 -14.65484 -14.35742 -14.03169 -13.87230 -13.59154 -13.32856 -13.10992 -13.04374 -12.95218 -12.86912 -12.67861 -12.59209 -12.33936 -12.12555 -12.05452 -11.90749 -11.74989 -11.51571 -11.41684 -11.03433 -10.75378 -10.48555 -10.42284 -10.10732 -8.70351 -8.04833 -6.18390 1.40229 1.41737 1.48742 2.43329 2.81772 3.20711 3.53501 3.75999 3.84947 4.12031 4.29409 4.43555 4.49247 4.57802 4.61677 4.64911 4.66981 4.73621 4.75134 4.89001 4.89916 4.92223 4.96137 4.98817 5.02331 5.15992 5.18824 5.23549 5.32456 5.34621 5.43874 5.53674 5.58166 5.65775 5.74605 5.78941 5.86260 6.07560 6.36368 6.46889 6.68448 6.99242 7.26216 7.51190 8.97610 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.008050 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.177960 B = 3477.346298 C = 4245.566042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.234 3.766 4 H -0.025 1.025 5 C -0.528 4.528 6 H 0.049 0.951 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.658 5.658 14 C 0.082 3.918 15 H 0.058 0.942 16 C -0.169 4.169 17 H 0.101 0.899 18 C -0.125 4.125 19 C 0.087 3.913 20 H 0.087 0.913 21 O -0.377 6.377 22 C 0.027 3.973 23 C -0.080 4.080 24 C -0.119 4.119 25 C -0.106 4.106 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.023 0.977 31 H 0.259 0.741 32 H 0.340 0.660 33 H 0.027 0.973 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.269 10.370 9.563 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.126 3.874 4 H -0.007 1.007 5 C -0.567 4.567 6 H 0.067 0.933 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.289 5.289 14 C -0.030 4.030 15 H 0.077 0.923 16 C -0.190 4.190 17 H 0.119 0.881 18 C -0.182 4.182 19 C 0.028 3.972 20 H 0.105 0.895 21 O -0.295 6.295 22 C -0.069 4.069 23 C -0.080 4.080 24 C -0.177 4.177 25 C -0.163 4.163 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.162 0.838 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.539 9.546 9.626 15.512 hybrid contribution 1.622 0.661 -1.166 2.104 sum -5.917 10.207 8.460 14.518 Atomic orbital electron populations 1.21616 0.96883 0.99632 1.00127 1.21404 0.93995 0.99297 0.99454 1.18764 0.92346 0.90787 0.85516 1.00713 1.21687 0.93045 1.37078 1.04866 0.93272 1.25606 1.01873 0.95148 0.95628 1.70016 1.36241 1.39241 1.09895 0.85759 0.81346 0.78200 0.77184 1.19955 1.21090 1.19913 1.60494 1.10041 1.31875 1.26519 1.22782 0.93941 0.90134 0.96108 0.92338 1.23797 0.97754 1.00130 0.97309 0.88072 1.21396 0.96815 1.00085 0.99913 1.23191 0.85420 0.97738 0.90826 0.89510 1.87873 1.36103 1.32399 1.73170 1.22919 0.97765 0.88444 0.97742 1.22293 0.94868 0.95179 0.95710 1.21521 0.92085 1.01432 1.02623 1.21226 1.01689 0.97637 0.95765 0.92515 0.95178 0.93877 0.92501 0.95768 0.93156 0.83825 0.95373 0.92552 0.92900 0.89301 0.94120 0.92535 0.92120 0.90645 0.91782 0.92987 0.92667 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.81 71.98 0.63 -4.62 16 2 C -0.10 -5.18 5.45 30.59 0.17 -5.01 16 3 C 0.23 11.96 1.35 44.17 0.06 12.02 16 4 H -0.02 -1.42 7.15 -2.39 -0.02 -1.43 16 5 C -0.53 -29.27 8.60 25.60 0.22 -29.05 16 6 H 0.05 2.73 7.39 -2.91 -0.02 2.71 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.91 -53.45 11.29 21.44 0.24 -53.20 16 9 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 N -0.66 -28.26 4.67 -470.62 -2.20 -30.46 16 14 C 0.08 2.95 2.46 45.44 0.11 3.06 16 15 H 0.06 2.27 6.85 -2.39 -0.02 2.25 16 16 C -0.17 -5.37 3.95 -10.27 -0.04 -5.41 16 17 H 0.10 2.83 7.66 -2.38 -0.02 2.81 16 18 C -0.12 -4.56 8.52 71.98 0.61 -3.94 16 19 C 0.09 2.35 3.63 31.21 0.11 2.47 16 20 H 0.09 1.91 7.86 -2.39 -0.02 1.89 16 21 O -0.38 -11.25 6.20 -148.98 -0.92 -12.17 16 22 C 0.03 0.61 10.86 113.37 1.23 1.84 16 23 C -0.08 -2.23 1.36 -51.56 -0.07 -2.30 16 24 C -0.12 -2.56 9.08 71.98 0.65 -1.90 16 25 C -0.11 -3.11 8.46 71.98 0.61 -2.50 16 26 H 0.06 2.23 7.09 -2.39 -0.02 2.22 16 27 H 0.03 1.25 8.12 -2.38 -0.02 1.23 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 3.21 5.96 -2.39 -0.01 3.20 16 30 H 0.02 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.34 15.20 4.31 -89.69 -0.39 14.81 16 33 H 0.03 1.21 7.45 -2.39 -0.02 1.20 16 34 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.05 2.11 5.62 -2.39 -0.01 2.09 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.04 0.86 8.14 -2.38 -0.02 0.85 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.24 7.34 -2.39 -0.02 1.23 16 42 H 0.05 1.76 6.60 -2.39 -0.02 1.75 16 43 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -60.83 329.95 4.46 -56.37 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.56 Total: 26.88 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 4.75 Total: -33.97 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.96 Total: -83.66 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.92 Total: -12.17 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -60.83 4.46 -56.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390819469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.062 kcal (2) G-P(sol) polarization free energy of solvation -60.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds