Wall clock time and date at job start Mon Mar 30 2020 07:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46625 * 2 1 4 4 O 1.42896 * 109.47080 * 120.00075 * 2 1 3 5 5 C 1.42902 * 113.99791 * 90.00617 * 4 2 1 6 6 C 1.53011 * 109.46970 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46739 * 59.99793 * 6 5 4 8 8 C 1.52996 * 109.47078 * 300.00012 * 6 5 4 9 9 N 1.46893 * 109.47027 * 179.97438 * 6 5 4 10 10 C 1.46904 * 110.99976 * 180.02562 * 9 6 5 11 11 C 1.53001 * 109.46929 * 184.94930 * 10 9 6 12 12 C 1.50696 * 115.54952 * 294.79763 * 11 10 9 13 13 H 1.07998 * 119.99768 * 95.20861 * 12 11 10 14 14 C 1.37876 * 120.00070 * 274.92320 * 12 11 10 15 15 N 1.31513 * 120.00192 * 355.43121 * 14 12 11 16 16 Si 1.86797 * 119.99835 * 175.41894 * 14 12 11 17 17 H 1.48505 * 109.46928 * 90.00838 * 16 14 12 18 18 H 1.48506 * 109.47377 * 210.00617 * 16 14 12 19 19 H 1.48502 * 109.47468 * 330.00552 * 16 14 12 20 20 C 1.53004 * 117.49978 * 80.47200 * 11 10 9 21 21 C 1.53004 * 117.49332 * 149.12852 * 11 10 9 22 22 H 1.08996 * 109.47544 * 60.00162 * 1 2 3 23 23 H 1.08999 * 109.46634 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46996 * 299.99296 * 1 2 3 25 25 H 1.09001 * 109.46996 * 240.00704 * 2 1 3 26 26 H 1.09004 * 109.47087 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47469 * 300.00130 * 3 2 1 28 28 H 1.09003 * 109.47367 * 60.00522 * 3 2 1 29 29 H 1.08990 * 109.47159 * 59.99902 * 5 4 2 30 30 H 1.08996 * 109.46912 * 299.99209 * 5 4 2 31 31 H 1.08997 * 109.46674 * 180.02562 * 7 6 5 32 32 H 1.09008 * 109.47045 * 299.99496 * 7 6 5 33 33 H 1.08992 * 109.47147 * 60.00299 * 7 6 5 34 34 H 1.09001 * 109.46907 * 300.00057 * 8 6 5 35 35 H 1.08999 * 109.47220 * 59.99714 * 8 6 5 36 36 H 1.08997 * 109.47356 * 179.97438 * 8 6 5 37 37 H 1.00895 * 111.00084 * 303.95582 * 9 6 5 38 38 H 1.09001 * 109.46990 * 64.94801 * 10 9 6 39 39 H 1.09002 * 109.46887 * 304.95015 * 10 9 6 40 40 H 0.96993 * 120.00032 * 184.99943 * 15 14 12 41 41 H 1.08993 * 117.49795 * 215.00319 * 20 11 10 42 42 H 1.09001 * 117.49533 * 0.02562 * 20 11 10 43 43 H 1.08995 * 117.50185 * 359.97438 * 21 11 10 44 44 H 1.09002 * 117.49226 * 144.97307 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2003 -2.0782 0.9885 6 6 2.7093 -2.6925 2.2941 7 6 1.6823 -2.4560 3.4034 8 6 4.0376 -2.0394 2.6812 9 7 2.9080 -4.1364 2.1111 10 6 3.3969 -4.7614 3.3473 11 6 3.7086 -6.2361 3.0844 12 6 2.5233 -7.0988 2.7357 13 1 2.2784 -7.2871 1.7008 14 6 1.7549 -7.6524 3.7377 15 7 2.1076 -7.5025 4.9958 16 14 0.2127 -8.6149 3.3084 17 1 0.5587 -10.0472 3.1232 18 1 -0.7758 -8.4828 4.4088 19 1 -0.3710 -8.0802 2.0520 20 6 5.0446 -6.5677 2.4165 21 6 4.8330 -6.8768 3.9007 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.8934 -0.5137 -0.8901 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 2.9321 -2.2465 0.1986 30 1 1.2540 -2.5433 0.7124 31 1 2.0451 -2.8933 4.3335 32 1 1.5345 -1.3846 3.5393 33 1 0.7360 -2.9213 3.1276 34 1 4.7692 -2.2078 1.8909 35 1 3.8897 -0.9681 2.8171 36 1 4.4000 -2.4767 3.6115 37 1 2.0599 -4.5806 1.7926 38 1 2.6327 -4.6838 4.1206 39 1 4.3020 -4.2522 3.6785 40 1 1.6091 -7.9518 5.6960 41 1 5.0662 -7.4097 1.7248 42 1 5.7017 -5.7352 2.1647 43 1 5.3509 -6.2477 4.6246 44 1 4.7151 -7.9223 4.1857 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396496561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:07 Heat of formation + Delta-G solvation = -37.061990 kcal Electronic energy + Delta-G solvation = -20025.335301 eV Core-core repulsion = 17171.083728 eV Total energy + Delta-G solvation = -2854.251573 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.87136 -37.32004 -35.70486 -32.58682 -31.86339 -29.90330 -27.41223 -26.86308 -26.39202 -25.53749 -23.81900 -21.29489 -20.89166 -19.06269 -18.70595 -16.70293 -16.04485 -15.46181 -15.16249 -14.59912 -14.44284 -14.13665 -13.84205 -13.32507 -13.23036 -12.74649 -12.53871 -12.37242 -12.29593 -12.05373 -11.93076 -11.56647 -11.37764 -11.20348 -11.00444 -10.90309 -10.86678 -10.72859 -10.59076 -10.40035 -10.12054 -10.01530 -9.41914 -9.27506 -8.78367 -8.35753 -8.00773 -7.45116 -5.98289 -4.05503 3.29045 3.36673 3.39262 3.66858 4.41846 4.79564 4.94723 4.99448 5.10268 5.23505 5.27276 5.30618 5.45848 5.53440 5.59124 5.66285 5.69169 5.74838 5.82544 5.92648 6.06637 6.09484 6.13168 6.20964 6.22810 6.34011 6.42668 6.54174 6.56729 6.65897 6.71067 6.92193 6.95871 7.00563 7.25848 7.37729 7.57082 7.66211 7.91460 8.04162 8.30292 8.54389 8.97953 9.60011 11.08755 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023556 B = 0.005268 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.360821 B = 5313.659014 C = 5995.668800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.081 3.919 3 C -0.148 4.148 4 O -0.378 6.378 5 C 0.078 3.922 6 C 0.112 3.888 7 C -0.174 4.174 8 C -0.131 4.131 9 N -0.670 5.670 10 C 0.106 3.894 11 C 0.046 3.954 12 C -0.491 4.491 13 H 0.059 0.941 14 C 0.070 3.930 15 N -0.879 5.879 16 Si 0.885 3.115 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.273 1.273 20 C -0.201 4.201 21 C -0.156 4.156 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.346 0.654 38 H 0.035 0.965 39 H 0.044 0.956 40 H 0.258 0.742 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.795 13.919 -7.170 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.023 3.977 3 C -0.205 4.205 4 O -0.297 6.297 5 C 0.001 3.999 6 C 0.020 3.980 7 C -0.233 4.233 8 C -0.188 4.188 9 N -0.302 5.302 10 C -0.023 4.023 11 C 0.046 3.954 12 C -0.529 4.529 13 H 0.077 0.923 14 C -0.133 4.133 15 N -0.517 5.517 16 Si 0.713 3.287 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.239 4.239 21 C -0.194 4.194 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.164 0.836 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.231 14.101 -7.069 15.776 hybrid contribution -1.799 -0.844 0.236 2.001 sum -2.030 13.257 -6.833 15.052 Atomic orbital electron populations 1.22298 0.96352 1.02408 1.02170 1.22015 0.93411 0.93635 0.88671 1.21846 1.01748 0.94783 1.02147 1.87880 1.86446 1.20430 1.34964 1.22452 0.99076 0.80611 0.97766 1.20783 0.94810 0.90112 0.92271 1.22450 0.99188 1.01680 0.99960 1.21776 0.96091 0.99590 1.01380 1.60544 1.36870 0.99523 1.33256 1.21507 0.97389 0.94217 0.89138 1.18768 0.87728 0.90825 0.98105 1.20461 1.09835 1.30154 0.92471 0.92308 1.24992 0.97305 0.95959 0.95046 1.70004 1.40139 1.42390 0.99117 0.86707 0.83563 0.80403 0.78028 1.20764 1.21363 1.19832 1.22865 1.03714 1.01518 0.95776 1.22490 1.04631 1.00998 0.91286 0.92032 0.92412 0.91934 0.92437 0.92057 0.91626 0.91957 0.92737 0.93757 0.92215 0.92331 0.93171 0.92553 0.92422 0.92648 0.83558 0.94695 0.93755 0.93185 0.91047 0.91804 0.92414 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.53 37.16 0.35 -1.39 16 2 C 0.08 0.88 3.34 -26.73 -0.09 0.79 16 3 C -0.15 -1.35 9.56 37.16 0.36 -1.00 16 4 O -0.38 -5.22 8.64 -35.23 -0.30 -5.53 16 5 C 0.08 1.14 4.87 37.16 0.18 1.32 16 6 C 0.11 1.85 0.80 -131.60 -0.10 1.74 16 7 C -0.17 -2.90 8.08 37.16 0.30 -2.60 16 8 C -0.13 -2.06 8.10 37.16 0.30 -1.76 16 9 N -0.67 -12.98 6.06 -99.96 -0.61 -13.59 16 10 C 0.11 2.34 4.73 -3.82 -0.02 2.32 16 11 C 0.05 1.14 1.65 -155.66 -0.26 0.88 16 12 C -0.49 -13.10 8.32 -34.44 -0.29 -13.39 16 13 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 14 C 0.07 1.88 5.43 -17.82 -0.10 1.79 16 15 N -0.88 -24.72 12.65 55.43 0.70 -24.02 16 16 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.20 -4.55 9.96 -26.69 -0.27 -4.82 16 21 C -0.16 -3.76 9.14 -26.69 -0.24 -4.00 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.60 7.79 -51.93 -0.40 0.20 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 30 H 0.04 0.64 7.87 -51.93 -0.41 0.23 16 31 H 0.06 1.08 6.52 -51.93 -0.34 0.74 16 32 H 0.06 0.91 7.68 -51.92 -0.40 0.51 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.84 7.68 -51.93 -0.40 0.45 16 36 H 0.05 0.91 6.30 -51.93 -0.33 0.58 16 37 H 0.35 7.04 8.28 -39.29 -0.33 6.71 16 38 H 0.03 0.85 6.58 -51.93 -0.34 0.51 16 39 H 0.04 0.94 6.00 -51.93 -0.31 0.63 16 40 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 41 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -27.44 348.09 -8.14 -35.57 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -8.28 Total: 6.55 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 0.13 Total: -20.11 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.10 Total: -37.61 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.30 Total: -5.53 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.44 -8.14 -35.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396496561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.490 kcal (2) G-P(sol) polarization free energy of solvation -27.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds