Wall clock time and date at job start Mon Mar 30 2020 07:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46625 * 2 1 4 4 O 1.42896 * 109.47080 * 120.00075 * 2 1 3 5 5 C 1.42902 * 113.99791 * 90.00617 * 4 2 1 6 6 C 1.53011 * 109.46970 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46739 * 59.99793 * 6 5 4 8 8 C 1.52996 * 109.47078 * 300.00012 * 6 5 4 9 9 N 1.46893 * 109.47027 * 179.97438 * 6 5 4 10 10 C 1.46904 * 110.99976 * 180.02562 * 9 6 5 11 11 C 1.53001 * 109.46929 * 184.94930 * 10 9 6 12 12 C 1.50696 * 115.54952 * 294.79763 * 11 10 9 13 13 H 1.07998 * 119.99768 * 95.20861 * 12 11 10 14 14 C 1.37876 * 120.00070 * 274.92320 * 12 11 10 15 15 N 1.31513 * 120.00192 * 355.43121 * 14 12 11 16 16 Si 1.86797 * 119.99835 * 175.41894 * 14 12 11 17 17 H 1.48505 * 109.46928 * 90.00838 * 16 14 12 18 18 H 1.48506 * 109.47377 * 210.00617 * 16 14 12 19 19 H 1.48502 * 109.47468 * 330.00552 * 16 14 12 20 20 C 1.53004 * 117.49978 * 80.47200 * 11 10 9 21 21 C 1.53004 * 117.49332 * 149.12852 * 11 10 9 22 22 H 1.08996 * 109.47544 * 60.00162 * 1 2 3 23 23 H 1.08999 * 109.46634 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46996 * 299.99296 * 1 2 3 25 25 H 1.09001 * 109.46996 * 240.00704 * 2 1 3 26 26 H 1.09004 * 109.47087 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47469 * 300.00130 * 3 2 1 28 28 H 1.09003 * 109.47367 * 60.00522 * 3 2 1 29 29 H 1.08990 * 109.47159 * 59.99902 * 5 4 2 30 30 H 1.08996 * 109.46912 * 299.99209 * 5 4 2 31 31 H 1.08997 * 109.46674 * 180.02562 * 7 6 5 32 32 H 1.09008 * 109.47045 * 299.99496 * 7 6 5 33 33 H 1.08992 * 109.47147 * 60.00299 * 7 6 5 34 34 H 1.09001 * 109.46907 * 300.00057 * 8 6 5 35 35 H 1.08999 * 109.47220 * 59.99714 * 8 6 5 36 36 H 1.08997 * 109.47356 * 179.97438 * 8 6 5 37 37 H 1.00895 * 111.00084 * 303.95582 * 9 6 5 38 38 H 1.09001 * 109.46990 * 64.94801 * 10 9 6 39 39 H 1.09002 * 109.46887 * 304.95015 * 10 9 6 40 40 H 0.96993 * 120.00032 * 184.99943 * 15 14 12 41 41 H 1.08993 * 117.49795 * 215.00319 * 20 11 10 42 42 H 1.09001 * 117.49533 * 0.02562 * 20 11 10 43 43 H 1.08995 * 117.50185 * 359.97438 * 21 11 10 44 44 H 1.09002 * 117.49226 * 144.97307 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2003 -2.0782 0.9885 6 6 2.7093 -2.6925 2.2941 7 6 1.6823 -2.4560 3.4034 8 6 4.0376 -2.0394 2.6812 9 7 2.9080 -4.1364 2.1111 10 6 3.3969 -4.7614 3.3473 11 6 3.7086 -6.2361 3.0844 12 6 2.5233 -7.0988 2.7357 13 1 2.2784 -7.2871 1.7008 14 6 1.7549 -7.6524 3.7377 15 7 2.1076 -7.5025 4.9958 16 14 0.2127 -8.6149 3.3084 17 1 0.5587 -10.0472 3.1232 18 1 -0.7758 -8.4828 4.4088 19 1 -0.3710 -8.0802 2.0520 20 6 5.0446 -6.5677 2.4165 21 6 4.8330 -6.8768 3.9007 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.8934 -0.5137 -0.8901 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 2.9321 -2.2465 0.1986 30 1 1.2540 -2.5433 0.7124 31 1 2.0451 -2.8933 4.3335 32 1 1.5345 -1.3846 3.5393 33 1 0.7360 -2.9213 3.1276 34 1 4.7692 -2.2078 1.8909 35 1 3.8897 -0.9681 2.8171 36 1 4.4000 -2.4767 3.6115 37 1 2.0599 -4.5806 1.7926 38 1 2.6327 -4.6838 4.1206 39 1 4.3020 -4.2522 3.6785 40 1 1.6091 -7.9518 5.6960 41 1 5.0662 -7.4097 1.7248 42 1 5.7017 -5.7352 2.1647 43 1 5.3509 -6.2477 4.6246 44 1 4.7151 -7.9223 4.1857 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396496561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:07 Heat of formation + Delta-G solvation = -52.234152 kcal Electronic energy + Delta-G solvation = -20025.993216 eV Core-core repulsion = 17171.083728 eV Total energy + Delta-G solvation = -2854.909487 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09944 -38.78240 -37.28548 -33.95089 -33.53977 -31.36757 -28.31463 -28.09131 -27.75230 -27.46793 -25.41855 -22.78744 -22.14099 -20.95832 -20.09523 -17.97776 -17.66953 -16.83695 -16.58203 -16.31819 -15.68977 -15.54453 -15.49531 -14.63635 -14.54253 -14.18993 -13.84140 -13.61311 -13.40548 -13.26553 -13.05260 -12.95947 -12.84983 -12.80242 -12.62592 -12.50685 -12.28638 -12.21418 -11.98309 -11.91123 -11.62910 -11.37586 -11.17111 -10.75910 -10.43999 -10.34677 -9.89167 -9.08882 -8.05043 -6.17170 1.40925 1.43556 1.52022 2.44159 2.59484 3.22324 3.47288 3.78521 3.89262 3.97756 4.09499 4.18242 4.28831 4.35257 4.39234 4.53551 4.65676 4.67403 4.76025 4.76997 4.80609 4.83391 4.92135 4.93764 4.98806 5.00521 5.04872 5.07258 5.11343 5.17134 5.30636 5.32096 5.36481 5.38516 5.42431 5.69569 5.74025 5.85092 6.36274 6.39753 6.51249 6.67221 6.92305 7.50849 9.01438 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023556 B = 0.005268 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.360821 B = 5313.659014 C = 5995.668800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 C -0.144 4.144 4 O -0.390 6.390 5 C 0.088 3.912 6 C 0.109 3.891 7 C -0.165 4.165 8 C -0.124 4.124 9 N -0.666 5.666 10 C 0.124 3.876 11 C 0.023 3.977 12 C -0.500 4.500 13 H 0.053 0.947 14 C 0.026 3.974 15 N -0.908 5.908 16 Si 0.944 3.056 17 H -0.280 1.280 18 H -0.289 1.289 19 H -0.266 1.266 20 C -0.179 4.179 21 C -0.162 4.162 22 H 0.082 0.918 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.339 0.661 38 H 0.005 0.995 39 H 0.052 0.948 40 H 0.257 0.743 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 15.204 -8.635 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 C -0.201 4.201 4 O -0.310 6.310 5 C 0.011 3.989 6 C 0.018 3.982 7 C -0.224 4.224 8 C -0.182 4.182 9 N -0.297 5.297 10 C -0.005 4.005 11 C 0.022 3.978 12 C -0.538 4.538 13 H 0.071 0.929 14 C -0.174 4.174 15 N -0.546 5.546 16 Si 0.770 3.230 17 H -0.206 1.206 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.216 4.216 21 C -0.201 4.201 22 H 0.101 0.899 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.157 0.843 38 H 0.024 0.976 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.427 15.400 -8.554 17.621 hybrid contribution -1.721 -1.195 0.659 2.196 sum -2.148 14.205 -7.894 16.393 Atomic orbital electron populations 1.22282 0.95696 1.01977 1.03014 1.22291 0.94025 0.94406 0.87890 1.21845 1.01614 0.93587 1.03084 1.87856 1.86770 1.19666 1.36664 1.22224 0.98997 0.81354 0.96332 1.20887 0.95427 0.88492 0.93439 1.22356 0.98793 1.02162 0.99117 1.21717 0.95467 1.00151 1.00852 1.60517 1.36517 1.01039 1.31652 1.21190 0.96839 0.93151 0.89357 1.18954 0.87818 0.91885 0.99101 1.20686 1.10647 1.30302 0.92146 0.92925 1.25632 0.99809 0.97051 0.94952 1.70114 1.41279 1.43392 0.99850 0.85774 0.80269 0.79070 0.77859 1.20572 1.21479 1.19018 1.22833 1.02490 1.01812 0.94443 1.22387 1.05311 0.99744 0.92632 0.89889 0.93466 0.92416 0.91788 0.92266 0.89402 0.92322 0.92393 0.93835 0.94055 0.91101 0.93885 0.92259 0.91167 0.93680 0.84334 0.97639 0.92944 0.93398 0.91177 0.89694 0.91415 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.53 71.99 0.69 -2.41 16 2 C 0.07 1.40 3.34 30.60 0.10 1.50 16 3 C -0.14 -2.27 9.56 71.98 0.69 -1.58 16 4 O -0.39 -10.05 8.64 -148.98 -1.29 -11.34 16 5 C 0.09 2.44 4.87 71.99 0.35 2.80 16 6 C 0.11 3.48 0.80 3.53 0.00 3.48 16 7 C -0.17 -5.46 8.08 71.98 0.58 -4.88 16 8 C -0.12 -3.73 8.10 71.98 0.58 -3.14 16 9 N -0.67 -25.40 6.06 -470.16 -2.85 -28.25 16 10 C 0.12 5.45 4.73 86.30 0.41 5.86 16 11 C 0.02 1.13 1.65 -52.93 -0.09 1.04 16 12 C -0.50 -26.74 8.32 25.60 0.21 -26.52 16 13 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 14 C 0.03 1.38 5.43 84.65 0.46 1.84 16 15 N -0.91 -51.81 12.65 21.45 0.27 -51.54 16 16 Si 0.94 43.09 29.54 68.60 2.03 45.12 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 20 C -0.18 -7.86 9.96 30.62 0.30 -7.56 16 21 C -0.16 -7.84 9.14 30.62 0.28 -7.56 16 22 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.05 0.94 7.87 -2.39 -0.02 0.92 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.18 7.79 -2.39 -0.02 1.16 16 26 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.57 8.08 -2.39 -0.02 1.55 16 30 H 0.04 1.21 7.87 -2.39 -0.02 1.19 16 31 H 0.04 1.50 6.52 -2.39 -0.02 1.48 16 32 H 0.07 2.14 7.68 -2.38 -0.02 2.12 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.92 7.68 -2.39 -0.02 1.90 16 36 H 0.04 1.43 6.30 -2.39 -0.02 1.41 16 37 H 0.34 13.71 8.28 -89.70 -0.74 12.97 16 38 H 0.01 0.27 6.58 -2.39 -0.02 0.25 16 39 H 0.05 2.20 6.00 -2.39 -0.01 2.19 16 40 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 41 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 43 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 44 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -57.52 348.09 2.93 -54.59 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.20 Total: 28.55 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 4.57 Total: -37.13 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -2.58 Total: -79.79 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.29 Total: -11.34 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -57.52 2.93 -54.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396496561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.354 kcal (2) G-P(sol) polarization free energy of solvation -57.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds