Wall clock time and date at job start Mon Mar 30 2020 07:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47331 * 2 1 4 4 O 1.42898 * 109.47183 * 180.02562 * 3 2 1 5 5 C 1.42903 * 114.00047 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47362 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.47172 * 65.01886 * 6 5 4 8 8 C 1.46844 * 110.99913 * 200.01588 * 7 6 5 9 9 C 1.53037 * 109.52235 * 174.16373 * 8 7 6 10 10 C 1.53114 * 109.28088 * 59.17742 * 9 8 7 11 11 C 1.52996 * 109.58005 * 182.41071 * 10 9 8 12 12 C 1.50705 * 109.47095 * 294.71851 * 11 10 9 13 13 H 1.07997 * 119.99463 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99908 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99588 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00171 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47307 * 90.00159 * 16 14 12 18 18 H 1.48501 * 109.46876 * 209.99904 * 16 14 12 19 19 H 1.48495 * 109.47216 * 329.99968 * 16 14 12 20 20 C 1.53126 * 109.16153 * 302.34790 * 10 9 8 21 21 C 1.46849 * 110.99664 * 75.80542 * 7 6 5 22 22 H 1.09003 * 109.46871 * 300.00389 * 1 2 3 23 23 H 1.09000 * 109.47177 * 60.00081 * 1 2 3 24 24 H 1.09004 * 109.46906 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47574 * 239.99699 * 2 1 3 26 26 H 1.09000 * 109.47177 * 119.99919 * 2 1 3 27 27 H 1.08994 * 109.47255 * 59.99814 * 3 2 1 28 28 H 1.09000 * 109.46923 * 300.00074 * 3 2 1 29 29 H 1.09001 * 109.47158 * 59.99546 * 5 4 3 30 30 H 1.09004 * 109.47020 * 299.99831 * 5 4 3 31 31 H 1.08995 * 109.47279 * 185.01922 * 6 5 4 32 32 H 1.09004 * 109.46954 * 305.02200 * 6 5 4 33 33 H 1.09001 * 109.46077 * 294.18012 * 8 7 6 34 34 H 1.08998 * 109.46144 * 54.14762 * 8 7 6 35 35 H 1.09006 * 109.50047 * 299.23638 * 9 8 7 36 36 H 1.08993 * 109.50440 * 179.12232 * 9 8 7 37 37 H 1.08999 * 109.52238 * 62.25027 * 10 9 8 38 38 H 1.09002 * 109.47130 * 54.71159 * 11 10 9 39 39 H 1.08994 * 109.47704 * 174.71563 * 11 10 9 40 40 H 0.97004 * 120.00024 * 179.97438 * 15 14 12 41 41 H 1.08995 * 109.50214 * 297.71013 * 20 10 9 42 42 H 1.09002 * 109.50549 * 177.59308 * 20 10 9 43 43 H 1.08995 * 109.46376 * 305.85541 * 21 7 6 44 44 H 1.08996 * 109.46418 * 65.83392 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 6 5.5755 2.6271 -0.0025 7 7 6.0165 2.0052 -1.2582 8 6 7.3663 1.4434 -1.1216 9 6 7.7338 0.6799 -2.3960 10 6 7.6768 1.6348 -3.5916 11 6 7.9845 0.8651 -4.8776 12 6 9.4077 0.3709 -4.8389 13 1 10.0305 0.5849 -3.9828 14 6 9.9147 -0.3542 -5.8962 15 7 11.1568 -0.7850 -5.8626 16 14 8.8373 -0.7248 -7.3765 17 1 8.9796 0.3631 -8.3772 18 1 9.2565 -2.0136 -7.9836 19 1 7.4193 -0.8186 -6.9456 20 6 6.2745 2.2431 -3.6825 21 6 5.9493 2.9612 -2.3709 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.7290 3.2891 0.8887 30 1 3.7283 3.2886 -0.8913 31 1 6.0186 3.6189 0.0869 32 1 5.8918 2.0106 0.8389 33 1 8.0813 2.2506 -0.9628 34 1 7.3920 0.7630 -0.2705 35 1 7.0273 -0.1361 -2.5479 36 1 8.7417 0.2762 -2.3005 37 1 8.4106 2.4296 -3.4583 38 1 7.3072 0.0154 -4.9634 39 1 7.8519 1.5237 -5.7359 40 1 11.5134 -1.2955 -6.6064 41 1 5.5450 1.4517 -3.8547 42 1 6.2398 2.9562 -4.5062 43 1 4.9459 3.3832 -2.4270 44 1 6.6710 3.7613 -2.2064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399340297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:52 Heat of formation + Delta-G solvation = -71.499685 kcal Electronic energy + Delta-G solvation = -19433.047528 eV Core-core repulsion = 16577.302624 eV Total energy + Delta-G solvation = -2855.744904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.99803 -37.82347 -34.83972 -33.65528 -32.24209 -30.40776 -29.84177 -27.46603 -25.87869 -23.98166 -22.54537 -21.88811 -21.39064 -20.31431 -18.93263 -16.81891 -16.57692 -16.52369 -15.50558 -15.03120 -14.47260 -14.25112 -14.09131 -13.88240 -13.57857 -12.98731 -12.89577 -12.72215 -12.47863 -12.27054 -12.06685 -11.75271 -11.51692 -11.44576 -11.25688 -11.02650 -10.92656 -10.71858 -10.63214 -10.47859 -10.07693 -9.67740 -9.58069 -9.51475 -9.19300 -8.93690 -8.46564 -8.00385 -5.97709 -3.94216 3.35523 3.42953 3.48173 3.61173 4.09760 4.51765 4.78268 4.81217 5.00522 5.09938 5.15371 5.24301 5.28987 5.30956 5.35899 5.38859 5.43598 5.50971 5.58948 5.63299 5.75103 5.76442 5.78841 5.92354 5.96669 5.99901 6.05624 6.12174 6.24921 6.41685 6.57113 6.64271 6.92990 7.02743 7.12700 7.19516 7.34059 7.40203 7.46556 7.59083 7.88295 8.62023 9.07746 9.65895 11.15818 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024462 B = 0.004138 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.361379 B = 6765.567453 C = 7375.385324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.061 3.939 4 O -0.369 6.369 5 C 0.071 3.929 6 C 0.055 3.945 7 N -0.528 5.528 8 C 0.058 3.942 9 C -0.100 4.100 10 C -0.072 4.072 11 C -0.009 4.009 12 C -0.513 4.513 13 H 0.072 0.928 14 C 0.064 3.936 15 N -0.907 5.907 16 Si 0.878 3.122 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.265 1.265 20 C -0.114 4.114 21 C 0.058 3.942 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.009 0.991 40 H 0.261 0.739 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.327 7.017 12.718 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.288 6.288 5 C -0.006 4.006 6 C -0.073 4.073 7 N -0.253 5.253 8 C -0.069 4.069 9 C -0.138 4.138 10 C -0.091 4.091 11 C -0.046 4.046 12 C -0.551 4.551 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.706 3.294 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.152 4.152 21 C -0.069 4.069 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -18.400 6.359 12.511 23.142 hybrid contribution -0.039 0.742 -0.687 1.012 sum -18.439 7.101 11.824 23.027 Atomic orbital electron populations 1.21697 0.95099 1.02100 1.01759 1.21438 0.95299 0.95845 1.03534 1.22486 0.82030 0.97621 0.99435 1.88013 1.18390 1.27233 1.95179 1.22494 0.93789 0.85048 0.99291 1.22096 0.93414 0.98168 0.93673 1.61873 1.25856 1.34462 1.03096 1.22196 0.87383 0.97706 0.99654 1.21541 1.02062 0.97939 0.92252 1.21042 0.93944 0.97358 0.96761 1.19609 0.97471 0.95057 0.92478 1.21168 0.95743 1.33253 1.04889 0.90974 1.25032 0.94796 0.95482 0.98317 1.69922 1.14489 1.38045 1.32172 0.86798 0.81718 0.77659 0.83244 1.20475 1.21527 1.18969 1.21710 0.98894 0.99677 0.94875 1.22129 0.99606 0.93164 0.92045 0.92793 0.92610 0.92119 0.90854 0.91290 0.94102 0.93778 0.93687 0.93484 0.93558 0.90263 0.95544 0.91439 0.91859 0.90467 0.92547 0.96540 0.97289 0.92893 0.91610 0.92306 0.91868 0.95458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.17 6.30 -26.73 -0.17 -1.34 16 3 C 0.06 0.62 5.94 37.16 0.22 0.84 16 4 O -0.37 -4.85 10.29 -35.23 -0.36 -5.22 16 5 C 0.07 0.79 6.13 37.16 0.23 1.02 16 6 C 0.05 0.66 5.39 -3.82 -0.02 0.64 16 7 N -0.53 -7.93 4.53 -234.67 -1.06 -9.00 16 8 C 0.06 0.93 5.43 -3.84 -0.02 0.91 16 9 C -0.10 -1.93 5.15 -26.65 -0.14 -2.07 16 10 C -0.07 -1.47 2.20 -90.50 -0.20 -1.67 16 11 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 12 C -0.51 -14.66 9.00 -34.44 -0.31 -14.97 16 13 H 0.07 2.20 7.33 -52.49 -0.38 1.82 16 14 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 15 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 16 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 20 C -0.11 -1.95 5.38 -26.65 -0.14 -2.09 16 21 C 0.06 0.86 5.29 -3.83 -0.02 0.84 16 22 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.52 6.70 -51.93 -0.35 0.17 16 31 H 0.05 0.50 8.00 -51.93 -0.42 0.09 16 32 H 0.08 0.95 7.79 -51.93 -0.40 0.54 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.63 7.06 -51.93 -0.37 1.26 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 39 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.83 6.65 -51.93 -0.35 0.48 16 44 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -31.22 340.63 -9.12 -40.33 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -8.53 Total: -4.13 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -0.40 Total: -17.11 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.29 Total: -36.55 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.36 Total: -5.22 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.22 -9.12 -40.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399340297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.165 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds