Wall clock time and date at job start Mon Mar 30 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47202 * 2 1 4 4 H 1.08995 * 109.54406 * 305.10960 * 3 2 1 5 5 C 1.53090 * 109.50858 * 184.99753 * 3 2 1 6 6 N 1.47009 * 109.26111 * 183.21903 * 5 3 2 7 7 C 1.46906 * 111.00252 * 182.39276 * 6 5 3 8 8 C 1.52997 * 109.46848 * 66.04480 * 7 6 5 9 9 C 1.53006 * 109.46931 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46815 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.46742 * 180.02562 * 10 9 8 12 12 H 1.08005 * 120.00422 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00104 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99993 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00367 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46993 * 60.00398 * 15 13 11 17 17 H 1.48501 * 109.47351 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47152 * 300.00396 * 15 13 11 19 19 C 1.47020 * 110.75180 * 58.61704 * 6 5 3 20 20 H 1.09007 * 109.50106 * 181.45086 * 19 6 5 21 21 C 1.52997 * 109.50544 * 61.32220 * 19 6 5 22 22 C 1.53097 * 109.25663 * 301.38207 * 19 6 5 23 23 O 1.43021 * 109.25605 * 56.85187 * 22 19 6 24 24 H 1.09002 * 109.47071 * 60.00076 * 1 2 3 25 25 H 1.09005 * 109.47195 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47225 * 299.99907 * 1 2 3 27 27 H 1.09007 * 109.46935 * 239.99972 * 2 1 3 28 28 H 1.08994 * 109.46601 * 120.00647 * 2 1 3 29 29 H 1.08999 * 109.51016 * 63.28280 * 5 3 2 30 30 H 1.08998 * 109.54428 * 303.17786 * 5 3 2 31 31 H 1.08998 * 109.47121 * 186.04314 * 7 6 5 32 32 H 1.09000 * 109.47141 * 306.04512 * 7 6 5 33 33 H 1.08998 * 109.47584 * 300.00097 * 8 7 6 34 34 H 1.09005 * 109.46901 * 60.00396 * 8 7 6 35 35 H 1.08998 * 109.47207 * 299.99936 * 9 8 7 36 36 H 1.09000 * 109.46973 * 60.00084 * 9 8 7 37 37 H 1.08998 * 109.47047 * 299.99870 * 10 9 8 38 38 H 1.08992 * 109.47082 * 60.00224 * 10 9 8 39 39 H 0.96994 * 120.00185 * 179.97438 * 14 13 11 40 40 H 1.08995 * 109.47240 * 60.00156 * 21 19 6 41 41 H 1.09005 * 109.46909 * 180.02562 * 21 19 6 42 42 H 1.08998 * 109.47248 * 299.99779 * 21 19 6 43 43 H 1.08995 * 109.50808 * 296.91455 * 22 19 6 44 44 H 1.08995 * 109.54142 * 176.80219 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6046 1.9831 -0.8403 5 6 3.5658 1.4452 -0.1257 6 7 4.0562 2.8289 -0.0476 7 6 5.5141 2.8813 -0.2211 8 6 5.8743 2.4472 -1.6433 9 6 7.3926 2.5024 -1.8242 10 6 7.7527 2.0688 -3.2467 11 6 9.2482 2.1226 -3.4246 12 1 9.8788 2.4344 -2.6051 13 6 9.8116 1.7728 -4.6334 14 7 9.0439 1.3926 -5.6313 15 14 11.6653 1.8401 -4.8543 16 1 12.3135 0.9271 -3.8789 17 1 12.0149 1.4192 -6.2349 18 1 12.1410 3.2281 -4.6250 19 6 3.6539 3.4533 1.2211 20 1 4.0053 4.4849 1.2466 21 6 4.2638 2.6759 2.3892 22 6 2.1272 3.4305 1.3333 23 8 1.6664 2.0810 1.2240 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8529 1.0108 -1.0833 30 1 3.9995 0.8591 0.6845 31 1 5.8636 3.8999 -0.0526 32 1 5.9895 2.2109 0.4949 33 1 5.5247 1.4286 -1.8118 34 1 5.3988 3.1177 -2.3592 35 1 7.7418 3.5211 -1.6559 36 1 7.8684 1.8323 -1.1082 37 1 7.4035 1.0502 -3.4154 38 1 7.2770 2.7393 -3.9622 39 1 9.4402 1.1469 -6.4818 40 1 5.3505 2.6893 2.3066 41 1 3.9648 3.1391 3.3295 42 1 3.9102 1.6452 2.3638 43 1 1.6943 4.0290 0.5318 44 1 1.8263 3.8408 2.2972 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403802199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:32 Heat of formation + Delta-G solvation = -72.385046 kcal Electronic energy + Delta-G solvation = -19554.373754 eV Core-core repulsion = 16698.590459 eV Total energy + Delta-G solvation = -2855.783296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.20070 -36.65526 -34.62853 -34.00735 -32.36850 -30.97451 -29.10193 -27.29191 -26.45561 -24.24742 -23.90522 -21.80643 -20.96526 -19.99023 -19.24812 -16.63678 -16.59481 -16.20095 -15.34157 -15.25331 -14.93698 -14.47461 -14.08898 -13.86533 -13.84114 -13.35556 -12.80416 -12.53918 -12.45182 -12.23307 -12.01699 -11.74160 -11.60590 -11.38518 -11.30440 -11.09046 -11.05753 -10.89547 -10.55176 -10.49205 -10.34979 -10.28035 -9.66664 -9.57366 -9.22640 -8.99465 -8.31835 -8.27577 -5.96781 -3.99111 3.34632 3.38845 3.41378 3.63471 3.80865 4.48176 4.62645 4.72862 4.85003 4.92753 5.00738 5.13301 5.19169 5.31746 5.36846 5.38592 5.43726 5.50185 5.54201 5.59239 5.63153 5.74022 5.78640 5.81884 5.88107 5.91747 5.97786 6.12904 6.15710 6.19491 6.26686 6.52182 6.81598 6.96899 7.03276 7.05402 7.13711 7.24101 7.71654 7.87872 8.04185 8.46994 9.08148 9.64632 11.14528 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.031671 B = 0.003609 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.873759 B = 7756.850209 C = 8368.923412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.094 3.906 4 H 0.066 0.934 5 C 0.018 3.982 6 N -0.531 5.531 7 C 0.056 3.944 8 C -0.114 4.114 9 C -0.109 4.109 10 C 0.022 3.978 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.041 3.959 20 H 0.090 0.910 21 C -0.182 4.182 22 C 0.071 3.929 23 O -0.380 6.380 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.014 0.986 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.995 1.135 14.506 21.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C 0.036 3.964 4 H 0.084 0.916 5 C -0.111 4.111 6 N -0.255 5.255 7 C -0.071 4.071 8 C -0.151 4.151 9 C -0.147 4.147 10 C -0.015 4.015 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.067 4.067 20 H 0.108 0.892 21 C -0.240 4.240 22 C -0.006 4.006 23 O -0.299 6.299 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.311 1.255 14.072 21.579 hybrid contribution 1.718 -0.262 0.250 1.756 sum -14.593 0.993 14.322 20.471 Atomic orbital electron populations 1.21694 0.95167 1.01407 1.02207 1.21530 0.96744 0.94313 1.02864 1.22215 0.93100 0.93901 0.87183 0.91610 1.22870 0.95438 0.90155 1.02595 1.62472 1.13820 1.17214 1.31973 1.22263 0.85542 1.01093 0.98236 1.21674 0.98096 1.00942 0.94428 1.21599 0.92157 1.00189 1.00763 1.19076 0.95990 0.96444 0.89989 1.21255 0.92531 1.44694 0.97462 0.92847 1.25030 0.97961 0.95401 0.96099 1.69958 1.34950 1.45633 1.03018 0.86673 0.85881 0.78447 0.77073 1.20286 1.21287 1.20265 1.22393 0.96356 0.99419 0.88581 0.89216 1.22360 1.01139 1.01778 0.98741 1.22618 0.92214 0.83902 1.01875 1.87939 1.76686 1.26270 1.39006 0.92849 0.92843 0.92098 0.90320 0.91311 0.89138 0.93738 0.90979 0.94782 0.92654 0.91713 0.93478 0.93735 0.96777 0.96618 0.92994 0.92368 0.92257 0.91832 0.92498 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.81 37.16 0.36 -0.92 16 2 C -0.12 -1.12 5.64 -26.73 -0.15 -1.28 16 3 C 0.09 1.06 2.80 -26.69 -0.07 0.98 16 4 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 5 C 0.02 0.22 4.32 -3.72 -0.02 0.20 16 6 N -0.53 -6.98 4.68 -226.34 -1.06 -8.04 16 7 C 0.06 0.81 4.33 -3.82 -0.02 0.79 16 8 C -0.11 -1.97 5.14 -26.73 -0.14 -2.11 16 9 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 11 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 12 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 15 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 C 0.04 0.46 2.97 -67.60 -0.20 0.26 16 20 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 21 C -0.18 -1.93 8.39 37.16 0.31 -1.62 16 22 C 0.07 0.72 6.41 37.21 0.24 0.96 16 23 O -0.38 -4.44 9.47 -35.23 -0.33 -4.78 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 27 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.19 6.37 -51.93 -0.33 0.86 16 30 H 0.04 0.57 6.39 -51.93 -0.33 0.24 16 31 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 32 H 0.03 0.49 6.88 -51.93 -0.36 0.14 16 33 H 0.05 0.96 6.51 -51.93 -0.34 0.62 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.06 0.65 6.69 -51.93 -0.35 0.30 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.74 6.07 -51.93 -0.32 0.43 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -30.49 337.58 -9.26 -39.75 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -8.30 Total: -3.77 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -0.37 Total: -18.54 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: -0.32 Total: -34.66 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.33 Total: -4.78 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.49 -9.26 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403802199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.638 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds