Wall clock time and date at job start Mon Mar 30 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 H 1.08993 * 109.50874 * 304.90912 * 3 2 1 5 5 C 1.53105 * 109.50596 * 184.78043 * 3 2 1 6 6 N 1.47013 * 109.25856 * 183.21690 * 5 3 2 7 7 C 1.46899 * 110.99906 * 182.39303 * 6 5 3 8 8 C 1.52997 * 109.47254 * 46.36702 * 7 6 5 9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47482 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47212 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00129 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99861 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00346 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99914 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47008 * 59.99580 * 15 13 11 17 17 H 1.48503 * 109.47134 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46873 * 299.99710 * 15 13 11 19 19 C 1.47011 * 110.74921 * 58.61974 * 6 5 3 20 20 H 1.08998 * 109.51125 * 61.31440 * 19 6 5 21 21 C 1.53004 * 109.50494 * 181.40432 * 19 6 5 22 22 C 1.53100 * 109.25980 * 301.38209 * 19 6 5 23 23 O 1.43010 * 109.50585 * 65.00421 * 3 2 1 24 24 H 1.08997 * 109.47176 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47078 * 300.00003 * 1 2 3 26 26 H 1.09009 * 109.46839 * 59.99673 * 1 2 3 27 27 H 1.09004 * 109.46933 * 240.00226 * 2 1 3 28 28 H 1.08995 * 109.47358 * 120.00454 * 2 1 3 29 29 H 1.09006 * 109.50431 * 63.28045 * 5 3 2 30 30 H 1.08997 * 109.50720 * 303.15544 * 5 3 2 31 31 H 1.09002 * 109.47043 * 166.36773 * 7 6 5 32 32 H 1.09001 * 109.47354 * 286.36835 * 7 6 5 33 33 H 1.09002 * 109.47153 * 300.00004 * 8 7 6 34 34 H 1.08998 * 109.47533 * 59.99633 * 8 7 6 35 35 H 1.09002 * 109.47103 * 300.00247 * 9 8 7 36 36 H 1.09001 * 109.47066 * 60.00169 * 9 8 7 37 37 H 1.09002 * 109.47153 * 300.00216 * 10 9 8 38 38 H 1.09001 * 109.47289 * 60.00300 * 10 9 8 39 39 H 0.96993 * 120.00442 * 180.02562 * 14 13 11 40 40 H 1.09005 * 109.47112 * 59.99989 * 21 19 6 41 41 H 1.09003 * 109.46875 * 179.97438 * 21 19 6 42 42 H 1.08996 * 109.46966 * 299.99671 * 21 19 6 43 43 H 1.08995 * 109.50594 * 176.78700 * 22 19 6 44 44 H 1.09002 * 109.50320 * 296.87289 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9816 -0.8425 5 6 3.5663 1.4451 -0.1203 6 7 4.0565 2.8289 -0.0422 7 6 5.5149 2.8810 -0.2106 8 6 5.9223 2.0108 -1.4012 9 6 7.4411 2.0656 -1.5770 10 6 7.8485 1.1949 -2.7673 11 6 9.3447 1.2484 -2.9400 12 1 9.9449 1.8442 -2.2683 13 6 9.9472 0.5375 -3.9562 14 7 9.2163 -0.1876 -4.7745 15 14 11.8016 0.6044 -4.1708 16 1 12.4609 0.0992 -2.9397 17 1 12.1971 -0.2408 -5.3260 18 1 12.2211 2.0075 -4.4168 19 6 3.6497 3.4549 1.2242 20 1 4.0811 2.9020 2.0587 21 6 4.1438 4.9025 1.2604 22 6 2.1226 3.4321 1.3311 23 8 1.6622 2.0826 1.2218 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8568 1.0094 -1.0763 30 1 3.9965 0.8601 0.6926 31 1 5.8232 3.9108 -0.3908 32 1 5.9985 2.5098 0.6930 33 1 5.6140 0.9810 -1.2209 34 1 5.4387 2.3819 -2.3048 35 1 7.7491 3.0955 -1.7574 36 1 7.9250 1.6946 -0.6735 37 1 7.5406 0.1650 -2.5864 38 1 7.3647 1.5654 -3.6710 39 1 9.6402 -0.6880 -5.4892 40 1 3.7107 5.4552 0.4267 41 1 3.8414 5.3662 2.1994 42 1 5.2307 4.9174 1.1809 43 1 1.8190 3.8435 2.2937 44 1 1.6926 4.0303 0.5277 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403802205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:37 Heat of formation + Delta-G solvation = -90.927042 kcal Electronic energy + Delta-G solvation = -19499.304382 eV Core-core repulsion = 16642.717045 eV Total energy + Delta-G solvation = -2856.587337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00216 -37.87639 -36.16979 -35.18619 -34.15897 -32.47180 -30.52400 -28.42727 -27.52794 -25.88928 -24.34020 -23.10041 -22.01314 -21.61381 -20.96840 -18.44274 -17.63107 -17.25722 -16.64349 -16.51514 -16.30165 -15.56608 -15.53590 -15.11986 -14.64731 -14.50203 -14.20272 -14.04192 -13.67793 -13.41974 -13.19139 -13.02249 -12.84030 -12.66754 -12.60603 -12.34868 -12.29673 -12.09647 -11.99351 -11.86722 -11.79878 -11.37812 -11.33233 -11.25812 -11.03345 -10.55894 -10.49530 -9.38457 -8.20465 -6.32141 1.39083 1.42389 1.50387 2.40294 2.69890 2.82616 3.12211 3.69635 3.83440 3.87303 4.06431 4.08661 4.12924 4.24177 4.27700 4.36692 4.44688 4.53555 4.58322 4.62880 4.64627 4.74468 4.79104 4.85669 4.87441 4.89732 5.02155 5.03839 5.11261 5.17688 5.21288 5.25424 5.29927 5.32918 5.43447 5.52321 5.75180 5.85013 5.95650 6.03630 6.22240 6.25044 6.84882 7.37202 8.91188 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027499 B = 0.003772 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.991076 B = 7421.553152 C = 8301.047513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.097 3.903 4 H 0.064 0.936 5 C 0.018 3.982 6 N -0.539 5.539 7 C 0.067 3.933 8 C -0.109 4.109 9 C -0.096 4.096 10 C 0.024 3.976 11 C -0.547 4.547 12 H 0.060 0.940 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.266 1.266 19 C 0.041 3.959 20 H 0.038 0.962 21 C -0.140 4.140 22 C 0.069 3.931 23 O -0.394 6.394 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.031 0.969 31 H 0.085 0.915 32 H 0.030 0.970 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.047 0.953 37 H -0.011 1.011 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.117 0.883 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.273 6.564 13.024 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.039 3.961 4 H 0.082 0.918 5 C -0.110 4.110 6 N -0.265 5.265 7 C -0.061 4.061 8 C -0.147 4.147 9 C -0.134 4.134 10 C -0.013 4.013 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.067 4.067 20 H 0.056 0.944 21 C -0.198 4.198 22 C -0.007 4.007 23 O -0.313 6.313 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.007 0.993 38 H 0.009 0.991 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.135 0.865 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.592 6.638 12.648 21.893 hybrid contribution 1.647 -0.637 -0.045 1.767 sum -14.944 6.001 12.603 20.450 Atomic orbital electron populations 1.21655 0.94156 1.02191 1.02014 1.21560 0.97596 0.93279 1.03068 1.22239 0.91963 0.94828 0.87043 0.91766 1.22914 0.96407 0.89732 1.01933 1.62367 1.12492 1.17186 1.34426 1.22091 0.86522 1.00796 0.96666 1.21630 0.95719 0.99245 0.98118 1.21391 0.94450 0.99509 0.98042 1.19001 0.94969 0.93947 0.93349 1.21713 0.94063 1.28652 1.14093 0.92225 1.26005 1.03641 0.94800 0.95432 1.70089 1.37652 1.31216 1.18412 0.85500 0.79149 0.78530 0.77869 1.19176 1.20732 1.19086 1.22435 0.97308 0.97172 0.89828 0.94422 1.21780 1.01401 0.93385 1.03230 1.22824 0.91323 0.83167 1.03417 1.87937 1.76676 1.27201 1.39479 0.91617 0.92714 0.92521 0.89735 0.91601 0.89508 0.95045 0.89716 0.95154 0.92701 0.92317 0.92851 0.93375 0.99299 0.99136 0.92746 0.91614 0.89936 0.92554 0.86482 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.81 71.98 0.71 -1.71 16 2 C -0.12 -2.30 5.65 30.59 0.17 -2.12 16 3 C 0.10 2.21 2.81 30.63 0.09 2.30 16 4 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 5 C 0.02 0.48 4.22 86.32 0.36 0.84 16 6 N -0.54 -14.04 4.69 -869.99 -4.08 -18.12 16 7 C 0.07 1.89 4.48 86.30 0.39 2.28 16 8 C -0.11 -3.79 4.48 30.59 0.14 -3.65 16 9 C -0.10 -4.00 5.15 30.59 0.16 -3.85 16 10 C 0.02 1.32 4.97 29.85 0.15 1.47 16 11 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 13 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 14 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 15 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 C 0.04 0.88 2.55 44.93 0.11 0.99 16 20 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 21 C -0.14 -2.44 8.90 71.98 0.64 -1.80 16 22 C 0.07 1.33 6.29 72.02 0.45 1.78 16 23 O -0.39 -9.19 10.01 -148.98 -1.49 -10.68 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.99 7.82 -2.39 -0.02 0.97 16 26 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 2.40 6.05 -2.38 -0.01 2.38 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 2.29 6.86 -2.39 -0.02 2.28 16 32 H 0.03 0.87 8.08 -2.39 -0.02 0.85 16 33 H 0.05 1.92 6.28 -2.39 -0.01 1.91 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.06 6.60 -2.39 -0.02 1.04 16 43 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -65.23 340.74 1.72 -63.51 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.92 Total: 10.67 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 4.06 Total: -34.70 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -3.79 Total: -75.56 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -1.49 Total: -10.68 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.23 1.72 -63.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403802205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.417 kcal (2) G-P(sol) polarization free energy of solvation -65.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds