Wall clock time and date at job start Mon Mar 30 2020 06:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47259 * 2 1 4 4 H 1.09001 * 109.46978 * 303.75634 * 3 2 1 5 5 C 1.50697 * 109.47024 * 183.75697 * 3 2 1 6 6 H 1.07993 * 120.00079 * 271.76294 * 5 3 2 7 7 C 1.37881 * 120.00174 * 91.77061 * 5 3 2 8 8 N 1.31517 * 119.99626 * 352.44999 * 7 5 3 9 9 Si 1.86794 * 120.00217 * 172.45407 * 7 5 3 10 10 H 1.48500 * 109.47156 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46991 * 239.99973 * 9 7 5 12 12 H 1.48504 * 109.47153 * 119.99908 * 9 7 5 13 13 N 1.46896 * 109.46671 * 63.75696 * 3 2 1 14 14 C 1.47012 * 111.00074 * 60.58031 * 13 3 2 15 15 C 1.53106 * 109.25853 * 182.39049 * 14 13 3 16 16 C 1.52999 * 109.50590 * 183.21743 * 15 14 13 17 17 C 1.52994 * 109.54077 * 63.10904 * 15 14 13 18 18 O 1.43020 * 109.25440 * 303.14862 * 15 14 13 19 19 C 1.43016 * 113.73513 * 58.67596 * 18 15 14 20 20 C 1.47017 * 110.99969 * 184.21141 * 13 3 2 21 21 H 1.08995 * 109.51091 * 297.58976 * 20 13 3 22 22 C 1.53006 * 109.50205 * 57.67220 * 20 13 3 23 23 C 1.52997 * 109.46783 * 183.33294 * 22 20 13 24 24 H 1.08995 * 109.47589 * 59.99371 * 1 2 3 25 25 H 1.09005 * 109.47488 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46726 * 299.99676 * 1 2 3 27 27 H 1.09000 * 109.46726 * 240.00324 * 2 1 3 28 28 H 1.08995 * 109.47589 * 120.00628 * 2 1 3 29 29 H 0.97007 * 120.00324 * 3.88943 * 8 7 5 30 30 H 1.08996 * 109.50873 * 302.32073 * 14 13 3 31 31 H 1.08998 * 109.50972 * 62.45388 * 14 13 3 32 32 H 1.08996 * 109.46841 * 179.78475 * 16 15 14 33 33 H 1.09004 * 109.47199 * 299.78287 * 16 15 14 34 34 H 1.09005 * 109.47124 * 59.77958 * 16 15 14 35 35 H 1.09005 * 109.47021 * 300.19148 * 17 15 14 36 36 H 1.08997 * 109.47327 * 60.19367 * 17 15 14 37 37 H 1.09006 * 109.47115 * 180.20053 * 17 15 14 38 38 H 1.09007 * 109.50162 * 181.39091 * 19 18 15 39 39 H 1.08999 * 109.51297 * 61.25995 * 19 18 15 40 40 H 1.08994 * 109.47515 * 303.33764 * 22 20 13 41 41 H 1.09005 * 109.46584 * 63.34008 * 22 20 13 42 42 H 1.09005 * 109.47350 * 182.60079 * 23 22 20 43 43 H 1.09002 * 109.47437 * 302.60251 * 23 22 20 44 44 H 1.08998 * 109.47210 * 62.60123 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6227 1.9754 -0.8544 5 6 3.5441 1.4435 -0.0931 6 1 4.1408 1.3947 0.8057 7 6 4.1585 1.5069 -1.3258 8 7 3.4403 1.4168 -2.4239 9 14 6.0109 1.7206 -1.4363 10 1 6.5830 1.7960 -0.0680 11 1 6.3217 2.9726 -2.1719 12 1 6.6006 0.5637 -2.1568 13 7 1.6258 2.1082 1.2422 14 6 2.1826 1.4234 2.4179 15 6 1.6789 2.1122 3.6891 16 6 2.3181 1.4547 4.9139 17 6 0.1571 1.9799 3.7741 18 8 2.0366 3.4963 3.6490 19 6 1.5104 4.1943 2.5170 20 6 2.0124 3.5266 1.2340 21 1 3.0981 3.6077 1.1816 22 6 1.3892 4.2190 0.0202 23 6 1.8588 5.6741 -0.0337 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.4734 1.3626 -2.3680 30 1 1.8629 0.3814 2.4175 31 1 3.2711 1.4708 2.3852 32 1 1.9620 1.9479 5.8183 33 1 2.0452 0.3998 4.9439 34 1 3.4024 1.5478 4.8520 35 1 -0.2976 2.4472 2.9005 36 1 -0.1148 0.9248 3.8046 37 1 -0.2007 2.4737 4.6777 38 1 1.8438 5.2318 2.5419 39 1 0.4212 4.1607 2.5427 40 1 1.6969 3.7038 -0.8897 41 1 0.3027 4.1907 0.1041 42 1 1.3789 6.1800 -0.8716 43 1 1.5915 6.1769 0.8957 44 1 2.9406 5.7021 -0.1638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403813802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:44 Heat of formation + Delta-G solvation = -59.780714 kcal Electronic energy + Delta-G solvation = -21588.062660 eV Core-core repulsion = 18732.825929 eV Total energy + Delta-G solvation = -2855.236731 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.74795 -36.45787 -34.44436 -32.83010 -31.83522 -30.88370 -27.68763 -26.71739 -26.28190 -24.78587 -23.34850 -22.47131 -20.39073 -19.59282 -18.65250 -16.74455 -16.18536 -15.35864 -14.62891 -14.39784 -14.01588 -13.81629 -13.74720 -13.50701 -12.99513 -12.76344 -12.45351 -12.27273 -12.07327 -11.91776 -11.86777 -11.59679 -11.30906 -10.98291 -10.90461 -10.73867 -10.62581 -10.56449 -10.47455 -10.19001 -10.05509 -9.96596 -9.72738 -9.39753 -9.05032 -8.68410 -8.35818 -7.04735 -6.38110 -4.12122 3.40340 3.41933 3.56097 4.17592 4.48193 4.79948 5.23531 5.32837 5.36007 5.44429 5.50559 5.58948 5.75308 5.81849 5.86743 5.92407 5.98467 6.02427 6.04155 6.11873 6.15785 6.19468 6.24952 6.35082 6.37397 6.40856 6.49820 6.55196 6.65517 6.70191 6.81107 6.83253 6.90227 6.99861 7.10090 7.31131 7.38663 7.70622 7.93274 8.12695 8.30256 8.51130 8.81432 9.60707 10.97660 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.008925 C = 0.008337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.283191 B = 3136.458816 C = 3357.845959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C 0.190 3.810 4 H 0.053 0.947 5 C -0.619 4.619 6 H 0.051 0.949 7 C 0.029 3.971 8 N -0.908 5.908 9 Si 1.063 2.937 10 H -0.291 1.291 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.522 5.522 14 C 0.038 3.962 15 C 0.110 3.890 16 C -0.135 4.135 17 C -0.163 4.163 18 O -0.384 6.384 19 C 0.067 3.933 20 C 0.062 3.938 21 H 0.057 0.943 22 C -0.112 4.112 23 C -0.149 4.149 24 H 0.040 0.960 25 H 0.028 0.972 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.271 0.729 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 2.899 9.122 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C 0.084 3.916 4 H 0.070 0.930 5 C -0.658 4.658 6 H 0.069 0.931 7 C -0.177 4.177 8 N -0.544 5.544 9 Si 0.893 3.107 10 H -0.217 1.217 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.246 5.246 14 C -0.091 4.091 15 C 0.071 3.929 16 C -0.193 4.193 17 C -0.220 4.220 18 O -0.303 6.303 19 C -0.010 4.010 20 C -0.047 4.047 21 H 0.075 0.925 22 C -0.150 4.150 23 C -0.206 4.206 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.350 3.038 8.215 9.779 hybrid contribution -0.415 -0.266 0.712 0.866 sum -4.765 2.773 8.926 10.492 Atomic orbital electron populations 1.21749 0.98093 0.98866 1.01235 1.21700 0.93054 0.99616 1.00270 1.19555 0.93989 0.90216 0.87856 0.92966 1.22471 0.92359 1.55869 0.95098 0.93124 1.25653 1.06455 0.93305 0.92271 1.70767 1.08191 1.45813 1.29676 0.83620 0.75013 0.76981 0.75122 1.21679 1.21344 1.21453 1.62741 1.57590 1.00854 1.03444 1.22565 0.98593 0.98089 0.89851 1.21606 0.94002 0.82063 0.95277 1.21710 1.01254 0.99806 0.96491 1.22227 0.96051 1.01903 1.01824 1.87924 1.75450 1.21661 1.45275 1.22778 0.97735 0.95147 0.85351 1.21974 0.99215 0.89806 0.93712 0.92526 1.21477 0.99535 0.94779 0.99235 1.21785 1.01520 0.96738 1.00591 0.94043 0.95254 0.92616 0.92915 0.93823 0.91763 0.90808 0.93563 0.92336 0.91434 0.92128 0.90988 0.92289 0.93372 0.89633 0.93167 0.90405 0.92629 0.93219 0.93320 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.79 37.15 0.36 -2.28 16 2 C -0.11 -2.36 5.17 -26.73 -0.14 -2.49 16 3 C 0.19 4.41 1.18 -68.87 -0.08 4.33 16 4 H 0.05 1.33 4.50 -51.93 -0.23 1.09 16 5 C -0.62 -16.22 6.81 -34.44 -0.23 -16.46 16 6 H 0.05 1.39 6.04 -52.49 -0.32 1.07 16 7 C 0.03 0.79 5.44 -17.82 -0.10 0.69 16 8 N -0.91 -26.07 13.62 55.43 0.75 -25.31 16 9 Si 1.06 24.99 29.91 -169.99 -5.08 19.90 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.52 -10.57 3.30 -219.79 -0.73 -11.30 16 14 C 0.04 0.73 3.70 -3.71 -0.01 0.72 16 15 C 0.11 1.83 1.11 -90.57 -0.10 1.73 16 16 C -0.13 -1.91 8.85 37.16 0.33 -1.58 16 17 C -0.16 -2.42 8.17 37.15 0.30 -2.11 16 18 O -0.38 -6.96 10.28 -35.23 -0.36 -7.32 16 19 C 0.07 1.13 5.53 37.21 0.21 1.34 16 20 C 0.06 1.22 1.78 -67.60 -0.12 1.10 16 21 H 0.06 1.30 7.31 -51.93 -0.38 0.92 16 22 C -0.11 -2.07 5.23 -26.73 -0.14 -2.21 16 23 C -0.15 -2.31 9.70 37.16 0.36 -1.95 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 1.01 7.71 -51.93 -0.40 0.61 16 27 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.04 0.94 6.17 -51.93 -0.32 0.62 16 29 H 0.27 7.72 6.69 -40.82 -0.27 7.45 16 30 H 0.07 1.41 6.12 -51.93 -0.32 1.10 16 31 H 0.05 1.03 6.24 -51.93 -0.32 0.70 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.15 6.13 -51.93 -0.32 0.83 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.31 6.64 -51.93 -0.34 0.97 16 39 H 0.05 0.81 6.49 -51.93 -0.34 0.48 16 40 H 0.08 1.70 6.10 -51.93 -0.32 1.38 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.66 6.47 -51.93 -0.34 0.32 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -27.67 323.09 -7.58 -35.24 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.67 Total: 3.11 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 0.64 Total: -19.19 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.03 Total: -36.61 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.36 Total: -7.32 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.67 -7.58 -35.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403813802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.538 kcal (2) G-P(sol) polarization free energy of solvation -27.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds