Wall clock time and date at job start Mon Mar 30 2020 06:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47259 * 2 1 4 4 H 1.09001 * 109.46978 * 303.75634 * 3 2 1 5 5 C 1.50697 * 109.47024 * 183.75697 * 3 2 1 6 6 H 1.07993 * 120.00079 * 271.76294 * 5 3 2 7 7 C 1.37881 * 120.00174 * 91.77061 * 5 3 2 8 8 N 1.31517 * 119.99626 * 352.44999 * 7 5 3 9 9 Si 1.86794 * 120.00217 * 172.45407 * 7 5 3 10 10 H 1.48500 * 109.47156 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46991 * 239.99973 * 9 7 5 12 12 H 1.48504 * 109.47153 * 119.99908 * 9 7 5 13 13 N 1.46896 * 109.46671 * 63.75696 * 3 2 1 14 14 C 1.47012 * 111.00074 * 60.58031 * 13 3 2 15 15 C 1.53106 * 109.25853 * 182.39049 * 14 13 3 16 16 C 1.52999 * 109.50590 * 183.21743 * 15 14 13 17 17 C 1.52994 * 109.54077 * 63.10904 * 15 14 13 18 18 O 1.43020 * 109.25440 * 303.14862 * 15 14 13 19 19 C 1.43016 * 113.73513 * 58.67596 * 18 15 14 20 20 C 1.47017 * 110.99969 * 184.21141 * 13 3 2 21 21 H 1.08995 * 109.51091 * 297.58976 * 20 13 3 22 22 C 1.53006 * 109.50205 * 57.67220 * 20 13 3 23 23 C 1.52997 * 109.46783 * 183.33294 * 22 20 13 24 24 H 1.08995 * 109.47589 * 59.99371 * 1 2 3 25 25 H 1.09005 * 109.47488 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46726 * 299.99676 * 1 2 3 27 27 H 1.09000 * 109.46726 * 240.00324 * 2 1 3 28 28 H 1.08995 * 109.47589 * 120.00628 * 2 1 3 29 29 H 0.97007 * 120.00324 * 3.88943 * 8 7 5 30 30 H 1.08996 * 109.50873 * 302.32073 * 14 13 3 31 31 H 1.08998 * 109.50972 * 62.45388 * 14 13 3 32 32 H 1.08996 * 109.46841 * 179.78475 * 16 15 14 33 33 H 1.09004 * 109.47199 * 299.78287 * 16 15 14 34 34 H 1.09005 * 109.47124 * 59.77958 * 16 15 14 35 35 H 1.09005 * 109.47021 * 300.19148 * 17 15 14 36 36 H 1.08997 * 109.47327 * 60.19367 * 17 15 14 37 37 H 1.09006 * 109.47115 * 180.20053 * 17 15 14 38 38 H 1.09007 * 109.50162 * 181.39091 * 19 18 15 39 39 H 1.08999 * 109.51297 * 61.25995 * 19 18 15 40 40 H 1.08994 * 109.47515 * 303.33764 * 22 20 13 41 41 H 1.09005 * 109.46584 * 63.34008 * 22 20 13 42 42 H 1.09005 * 109.47350 * 182.60079 * 23 22 20 43 43 H 1.09002 * 109.47437 * 302.60251 * 23 22 20 44 44 H 1.08998 * 109.47210 * 62.60123 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6227 1.9754 -0.8544 5 6 3.5441 1.4435 -0.0931 6 1 4.1408 1.3947 0.8057 7 6 4.1585 1.5069 -1.3258 8 7 3.4403 1.4168 -2.4239 9 14 6.0109 1.7206 -1.4363 10 1 6.5830 1.7960 -0.0680 11 1 6.3217 2.9726 -2.1719 12 1 6.6006 0.5637 -2.1568 13 7 1.6258 2.1082 1.2422 14 6 2.1826 1.4234 2.4179 15 6 1.6789 2.1122 3.6891 16 6 2.3181 1.4547 4.9139 17 6 0.1571 1.9799 3.7741 18 8 2.0366 3.4963 3.6490 19 6 1.5104 4.1943 2.5170 20 6 2.0124 3.5266 1.2340 21 1 3.0981 3.6077 1.1816 22 6 1.3892 4.2190 0.0202 23 6 1.8588 5.6741 -0.0337 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.4734 1.3626 -2.3680 30 1 1.8629 0.3814 2.4175 31 1 3.2711 1.4708 2.3852 32 1 1.9620 1.9479 5.8183 33 1 2.0452 0.3998 4.9439 34 1 3.4024 1.5478 4.8520 35 1 -0.2976 2.4472 2.9005 36 1 -0.1148 0.9248 3.8046 37 1 -0.2007 2.4737 4.6777 38 1 1.8438 5.2318 2.5419 39 1 0.4212 4.1607 2.5427 40 1 1.6969 3.7038 -0.8897 41 1 0.3027 4.1907 0.1041 42 1 1.3789 6.1800 -0.8716 43 1 1.5915 6.1769 0.8957 44 1 2.9406 5.7021 -0.1638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403813802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:44 Heat of formation + Delta-G solvation = -75.922362 kcal Electronic energy + Delta-G solvation = -21588.762615 eV Core-core repulsion = 18732.825929 eV Total energy + Delta-G solvation = -2855.936685 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25729 -38.10083 -35.95732 -34.56867 -33.54520 -32.41598 -29.12722 -28.03262 -27.88366 -26.49559 -25.07873 -24.02587 -21.93802 -21.28666 -20.25038 -18.63181 -17.71691 -16.80934 -16.15591 -15.99593 -15.73934 -15.49394 -15.41579 -15.02154 -14.54512 -14.37738 -14.00042 -13.66651 -13.50100 -13.21096 -13.17738 -12.86115 -12.77601 -12.65908 -12.52785 -12.46896 -12.21584 -12.05876 -12.01996 -11.96110 -11.71022 -11.57325 -11.37288 -10.94257 -10.90764 -10.44977 -10.24191 -8.90321 -8.52180 -6.29548 1.44492 1.51137 1.67083 2.50125 2.85078 3.11512 3.28765 3.87828 4.02573 4.05259 4.12580 4.17958 4.32859 4.37503 4.47872 4.51681 4.59413 4.65865 4.67076 4.71941 4.79650 4.83030 4.86063 4.94128 4.96853 5.03202 5.09698 5.12497 5.17954 5.20158 5.25584 5.30773 5.39002 5.43844 5.48451 5.52134 5.60542 5.98670 6.11264 6.33983 6.52073 6.54871 6.65036 7.48842 8.78936 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.008925 C = 0.008337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.283191 B = 3136.458816 C = 3357.845959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C 0.195 3.805 4 H 0.030 0.970 5 C -0.616 4.616 6 H 0.033 0.967 7 C -0.017 4.017 8 N -0.932 5.932 9 Si 1.101 2.899 10 H -0.284 1.284 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.510 5.510 14 C 0.041 3.959 15 C 0.108 3.892 16 C -0.132 4.132 17 C -0.155 4.155 18 O -0.396 6.396 19 C 0.073 3.927 20 C 0.062 3.938 21 H 0.014 0.986 22 C -0.106 4.106 23 C -0.142 4.142 24 H 0.036 0.964 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.023 0.977 28 H 0.044 0.956 29 H 0.261 0.739 30 H 0.076 0.924 31 H 0.009 0.991 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 3.462 11.015 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.141 4.141 3 C 0.087 3.913 4 H 0.048 0.952 5 C -0.655 4.655 6 H 0.051 0.949 7 C -0.217 4.217 8 N -0.570 5.570 9 Si 0.926 3.074 10 H -0.209 1.209 11 H -0.206 1.206 12 H -0.207 1.207 13 N -0.234 5.234 14 C -0.088 4.088 15 C 0.068 3.932 16 C -0.190 4.190 17 C -0.212 4.212 18 O -0.316 6.316 19 C -0.003 4.003 20 C -0.047 4.047 21 H 0.032 0.968 22 C -0.144 4.144 23 C -0.200 4.200 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.027 0.973 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.677 3.602 10.125 12.154 hybrid contribution -0.006 -0.450 0.163 0.479 sum -5.682 3.152 10.288 12.168 Atomic orbital electron populations 1.21607 0.95087 1.00499 1.01427 1.21546 0.95666 0.98055 0.98818 1.19379 0.92095 0.91127 0.88675 0.95182 1.22680 0.94178 1.54523 0.94139 0.94890 1.26742 1.09585 0.93100 0.92315 1.70861 1.07737 1.48132 1.30231 0.83114 0.71444 0.77353 0.75535 1.20931 1.20648 1.20664 1.62734 1.56830 1.01277 1.02554 1.22600 0.96316 0.98719 0.91124 1.21766 0.95715 0.81229 0.94444 1.21730 1.00356 1.00912 0.95966 1.22154 0.93895 1.02937 1.02252 1.87924 1.75983 1.22348 1.45303 1.22799 0.98599 0.95617 0.83317 1.22038 0.96831 0.89744 0.96129 0.96816 1.21391 1.00266 0.96099 0.96641 1.21744 1.00537 0.94970 1.02761 0.94526 0.92898 0.91634 0.95840 0.93704 0.92841 0.90609 0.97309 0.90402 0.89639 0.93364 0.92123 0.91046 0.91374 0.87649 0.91412 0.94688 0.91098 0.91638 0.90572 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.79 71.98 0.70 -3.95 16 2 C -0.10 -4.54 5.17 30.59 0.16 -4.38 16 3 C 0.19 9.33 1.18 44.17 0.05 9.38 16 4 H 0.03 1.61 4.50 -2.39 -0.01 1.60 16 5 C -0.62 -33.66 6.81 25.60 0.17 -33.49 16 6 H 0.03 1.89 6.04 -2.91 -0.02 1.87 16 7 C -0.02 -0.97 5.44 84.66 0.46 -0.50 16 8 N -0.93 -55.47 13.62 21.45 0.29 -55.18 16 9 Si 1.10 51.63 29.91 68.60 2.05 53.68 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.51 -20.80 3.30 -849.28 -2.80 -23.60 16 14 C 0.04 1.59 3.70 86.32 0.32 1.91 16 15 C 0.11 3.37 1.11 -10.76 -0.01 3.36 16 16 C -0.13 -3.42 8.85 71.98 0.64 -2.78 16 17 C -0.16 -4.07 8.17 71.98 0.59 -3.48 16 18 O -0.40 -13.60 10.28 -148.98 -1.53 -15.14 16 19 C 0.07 2.34 5.53 72.01 0.40 2.74 16 20 C 0.06 2.43 1.78 44.93 0.08 2.51 16 21 H 0.01 0.66 7.31 -2.39 -0.02 0.64 16 22 C -0.11 -3.91 5.23 30.60 0.16 -3.75 16 23 C -0.14 -4.28 9.70 71.98 0.70 -3.58 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.06 2.23 7.71 -2.39 -0.02 2.21 16 27 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 1.94 6.17 -2.39 -0.01 1.92 16 29 H 0.26 15.60 6.69 -92.70 -0.62 14.98 16 30 H 0.08 2.86 6.12 -2.39 -0.01 2.84 16 31 H 0.01 0.40 6.24 -2.39 -0.01 0.38 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.06 1.74 6.13 -2.38 -0.01 1.72 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.11 2.94 6.64 -2.38 -0.02 2.92 16 39 H 0.07 1.97 6.49 -2.39 -0.02 1.95 16 40 H 0.03 1.59 6.10 -2.39 -0.01 1.57 16 41 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 42 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.08 1.86 6.47 -2.39 -0.02 1.85 16 44 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -62.05 323.09 3.53 -58.52 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.10 Total: 17.73 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 4.42 Total: -36.01 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -2.51 Total: -78.78 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -1.53 Total: -15.14 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.68 kcal Total: -62.05 3.53 -58.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403813802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.404 kcal (2) G-P(sol) polarization free energy of solvation -62.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds